Wall clock time and date at job start Tue Mar 31 2020 20:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.53006 * 109.46825 * 240.00486 * 2 1 3 5 5 N 1.46898 * 109.47138 * 65.00038 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46948 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46809 * 120.00147 * 14 12 10 17 17 H 1.48497 * 109.47378 * 239.99941 * 14 12 10 18 18 C 1.52994 * 109.46945 * 120.00372 * 2 1 3 19 19 N 1.46496 * 109.47355 * 294.99481 * 18 2 1 20 20 C 1.34773 * 119.99934 * 180.02562 * 19 18 2 21 21 O 1.21511 * 120.00393 * 359.97438 * 20 19 18 22 22 C 1.48163 * 119.99729 * 180.02562 * 20 19 18 23 23 C 1.39901 * 120.90650 * 359.71476 * 22 20 19 24 24 C 1.38042 * 119.06128 * 179.73674 * 23 22 20 25 25 N 1.31880 * 120.93753 * 0.55532 * 24 23 22 26 26 C 1.31964 * 122.01306 * 359.71476 * 25 24 23 27 27 F 1.35094 * 119.58707 * 180.02562 * 26 25 24 28 28 C 1.38526 * 120.82463 * 0.02562 * 26 25 24 29 29 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46878 * 300.00031 * 1 2 3 31 31 H 1.08999 * 109.47096 * 59.99651 * 1 2 3 32 32 H 1.08997 * 109.46770 * 304.99985 * 4 2 1 33 33 H 1.08995 * 109.47019 * 185.00198 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 39 39 H 1.08997 * 109.47133 * 55.00232 * 18 2 1 40 40 H 1.09003 * 109.46947 * 174.99410 * 18 2 1 41 41 H 0.97001 * 119.99813 * 0.02562 * 19 18 2 42 42 H 1.07997 * 120.46729 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.52610 * 180.29954 * 24 23 22 44 44 H 1.07997 * 120.51400 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6513 0.0376 -2.4457 6 6 2.1246 -0.6269 -3.6674 7 6 1.7076 0.1783 -4.8710 8 8 1.0785 1.2050 -4.7253 9 7 2.0338 -0.2425 -6.1091 10 6 1.6548 0.4904 -7.2041 11 1 1.0946 1.4045 -7.0745 12 6 1.9915 0.0569 -8.4806 13 7 2.6736 -1.0552 -8.6383 14 14 1.4746 1.0551 -9.9726 15 1 0.7227 2.2561 -9.5283 16 1 2.6814 1.4783 -10.7273 17 1 0.6092 0.2246 -10.8482 18 6 2.0400 -0.7213 1.2492 19 7 1.6525 0.0352 2.4423 20 6 1.9965 -0.4133 3.6658 21 8 2.6276 -1.4455 3.7793 22 6 1.6042 0.3516 4.8725 23 6 0.8817 1.5446 4.7637 24 6 0.5313 2.2236 5.9134 25 7 0.8773 1.7684 7.1017 26 6 1.5632 0.6508 7.2503 27 9 1.8911 0.2293 8.4912 28 6 1.9510 -0.0956 6.1496 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6053 -1.7197 -1.2953 33 1 3.1262 -0.7995 -1.2057 34 1 1.9881 0.9875 -2.3967 35 1 3.2116 -0.7049 -3.6407 36 1 1.6902 -1.6247 -3.7298 37 1 2.5372 -1.0633 -6.2255 38 1 2.9083 -1.3580 -9.5294 39 1 1.6054 -1.7198 1.2950 40 1 3.1263 -0.7996 1.2054 41 1 1.1484 0.8590 2.3518 42 1 0.5988 1.9270 3.7941 43 1 -0.0307 3.1428 5.8383 44 1 2.5126 -1.0093 6.2769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714378554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:02 Heat of formation + Delta-G solvation = -80.226586 kcal Electronic energy + Delta-G solvation = -27076.980851 eV Core-core repulsion = 22750.850537 eV Total energy + Delta-G solvation = -4326.130314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.56794 -41.17209 -39.64619 -38.42396 -37.34006 -35.13978 -33.96559 -33.58670 -32.38632 -31.47567 -31.21612 -27.52910 -27.30790 -25.48856 -24.54979 -24.22913 -23.07708 -21.32935 -20.77893 -19.37169 -18.93236 -17.98212 -17.90178 -17.15146 -16.68467 -16.54635 -16.34131 -16.06039 -15.85904 -15.51948 -14.99613 -14.81170 -14.66365 -14.42880 -14.26560 -14.03008 -13.77453 -13.69176 -13.51285 -13.26147 -12.84783 -12.70024 -12.46548 -12.02410 -11.74212 -11.55517 -11.24702 -11.20696 -11.05893 -11.00705 -10.85082 -10.70701 -10.36924 -10.29533 -10.25211 -9.73334 -9.58765 -9.55069 -8.51055 -8.11456 -7.99222 -6.44768 -3.85743 -0.08005 0.21181 2.23482 2.40500 2.92615 3.03823 3.14037 3.24881 3.31833 3.83164 3.86726 3.87457 4.02108 4.10832 4.19404 4.24114 4.58512 4.65548 4.72841 4.83379 4.92623 5.02110 5.11083 5.20827 5.21614 5.22391 5.34883 5.45380 5.58399 5.65981 5.76016 5.80338 5.81000 5.86832 5.93752 6.06857 6.22680 6.29919 6.87032 6.91319 7.12946 7.52461 7.56612 7.58318 8.03291 8.57810 9.14819 9.51125 10.02154 10.72957 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.001408 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.610249 B =19882.126075 C =20412.435225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.078 0.922 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.123 3.877 19 N -0.714 5.714 20 C 0.557 3.443 21 O -0.523 6.523 22 C -0.057 4.057 23 C -0.154 4.154 24 C 0.138 3.862 25 N -0.500 5.500 26 C 0.308 3.692 27 F -0.106 7.106 28 C -0.138 4.138 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.349 0.651 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.403 0.597 42 H 0.150 0.850 43 H 0.177 0.823 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 1.951 27.410 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.001 4.001 19 N -0.366 5.366 20 C 0.342 3.658 21 O -0.399 6.399 22 C -0.068 4.068 23 C -0.175 4.175 24 C -0.018 4.018 25 N -0.215 5.215 26 C 0.155 3.845 27 F -0.085 7.085 28 C -0.160 4.160 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.168 0.832 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.239 0.761 42 H 0.168 0.832 43 H 0.194 0.806 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.222 1.941 28.115 28.270 hybrid contribution 1.133 -0.074 -1.358 1.771 sum -1.089 1.867 26.757 26.844 Atomic orbital electron populations 1.21777 0.93599 1.02345 1.02153 1.21358 0.97717 1.00031 0.92861 0.90358 1.21890 0.97411 0.98005 0.89155 1.60032 1.64173 1.05832 0.99771 1.21669 0.97777 0.98670 0.90077 1.19798 0.85593 0.87935 0.84084 1.90517 1.44171 1.26421 1.85739 1.41874 1.49444 1.24229 1.04459 1.19756 1.32868 1.06717 0.83608 0.87851 1.25269 0.96888 0.96644 0.99132 1.69621 1.38887 1.21741 1.23996 0.85799 0.78280 0.79574 0.80680 1.19212 1.20772 1.20724 1.21519 1.00452 0.95546 0.82571 1.45883 1.57199 1.27958 1.05578 1.17998 0.79994 0.84888 0.82947 1.90827 1.39098 1.23526 1.86425 1.20252 0.97589 0.95171 0.93774 1.22435 0.98719 0.94913 1.01441 1.22578 0.95216 0.98899 0.85120 1.66922 1.12219 1.12860 1.29501 1.18002 0.95171 0.90883 0.80450 1.91666 1.89599 1.88142 1.39115 1.21963 1.01352 1.02196 0.90520 0.92638 0.93791 0.90220 0.90638 0.95186 0.83223 0.93843 0.89565 0.77451 0.91901 0.90640 0.90921 0.76116 0.83216 0.80595 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.95 37.16 0.33 -0.86 16 2 C -0.10 -0.80 2.57 -90.62 -0.23 -1.03 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.07 0.68 5.07 -3.82 -0.02 0.66 16 5 N -0.67 -9.56 5.58 -115.05 -0.64 -10.20 16 6 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 7 C 0.44 10.05 7.82 -10.99 -0.09 9.97 16 8 O -0.58 -15.34 15.78 5.55 0.09 -15.26 16 9 N -0.56 -13.98 5.29 -10.97 -0.06 -14.04 16 10 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 14 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 18 C 0.12 0.93 5.06 -4.05 -0.02 0.91 16 19 N -0.71 -4.65 5.24 -61.16 -0.32 -4.97 16 20 C 0.56 4.79 7.80 -12.19 -0.10 4.70 16 21 O -0.52 -6.45 16.44 5.36 0.09 -6.36 16 22 C -0.06 -0.39 5.91 -104.66 -0.62 -1.01 16 23 C -0.15 -0.66 9.61 -39.03 -0.38 -1.03 16 24 C 0.14 0.67 11.17 -17.60 -0.20 0.47 16 25 N -0.50 -4.03 10.35 -13.64 -0.14 -4.17 16 26 C 0.31 2.56 8.41 -17.39 -0.15 2.42 16 27 F -0.11 -0.95 17.29 2.25 0.04 -0.91 16 28 C -0.14 -1.05 9.66 -38.93 -0.38 -1.43 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.27 7.18 -51.93 -0.37 -0.10 16 31 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.35 5.16 8.43 -39.29 -0.33 4.83 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.40 1.60 5.79 -40.82 -0.24 1.36 16 42 H 0.15 0.18 6.53 -52.49 -0.34 -0.17 16 43 H 0.18 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.16 1.18 7.74 -52.49 -0.41 0.77 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -33.92 383.26 -7.31 -41.23 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.73 Total: 10.00 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -2.10 Total: 6.69 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.44 Total: -56.87 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.18 Total: -21.61 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.92 -7.31 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714378554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.000 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds