Wall clock time and date at job start Tue Mar 31 2020 20:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.53006 * 109.46825 * 240.00486 * 2 1 3 5 5 N 1.46898 * 109.47138 * 65.00038 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46948 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46809 * 120.00147 * 14 12 10 17 17 H 1.48497 * 109.47378 * 239.99941 * 14 12 10 18 18 C 1.52994 * 109.46945 * 120.00372 * 2 1 3 19 19 N 1.46496 * 109.47355 * 294.99481 * 18 2 1 20 20 C 1.34773 * 119.99934 * 180.02562 * 19 18 2 21 21 O 1.21511 * 120.00393 * 359.97438 * 20 19 18 22 22 C 1.48163 * 119.99729 * 180.02562 * 20 19 18 23 23 C 1.39901 * 120.90650 * 359.71476 * 22 20 19 24 24 C 1.38042 * 119.06128 * 179.73674 * 23 22 20 25 25 N 1.31880 * 120.93753 * 0.55532 * 24 23 22 26 26 C 1.31964 * 122.01306 * 359.71476 * 25 24 23 27 27 F 1.35094 * 119.58707 * 180.02562 * 26 25 24 28 28 C 1.38526 * 120.82463 * 0.02562 * 26 25 24 29 29 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46878 * 300.00031 * 1 2 3 31 31 H 1.08999 * 109.47096 * 59.99651 * 1 2 3 32 32 H 1.08997 * 109.46770 * 304.99985 * 4 2 1 33 33 H 1.08995 * 109.47019 * 185.00198 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 39 39 H 1.08997 * 109.47133 * 55.00232 * 18 2 1 40 40 H 1.09003 * 109.46947 * 174.99410 * 18 2 1 41 41 H 0.97001 * 119.99813 * 0.02562 * 19 18 2 42 42 H 1.07997 * 120.46729 * 359.97438 * 23 22 20 43 43 H 1.08001 * 119.52610 * 180.29954 * 24 23 22 44 44 H 1.07997 * 120.51400 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6513 0.0376 -2.4457 6 6 2.1246 -0.6269 -3.6674 7 6 1.7076 0.1783 -4.8710 8 8 1.0785 1.2050 -4.7253 9 7 2.0338 -0.2425 -6.1091 10 6 1.6548 0.4904 -7.2041 11 1 1.0946 1.4045 -7.0745 12 6 1.9915 0.0569 -8.4806 13 7 2.6736 -1.0552 -8.6383 14 14 1.4746 1.0551 -9.9726 15 1 0.7227 2.2561 -9.5283 16 1 2.6814 1.4783 -10.7273 17 1 0.6092 0.2246 -10.8482 18 6 2.0400 -0.7213 1.2492 19 7 1.6525 0.0352 2.4423 20 6 1.9965 -0.4133 3.6658 21 8 2.6276 -1.4455 3.7793 22 6 1.6042 0.3516 4.8725 23 6 0.8817 1.5446 4.7637 24 6 0.5313 2.2236 5.9134 25 7 0.8773 1.7684 7.1017 26 6 1.5632 0.6508 7.2503 27 9 1.8911 0.2293 8.4912 28 6 1.9510 -0.0956 6.1496 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6053 -1.7197 -1.2953 33 1 3.1262 -0.7995 -1.2057 34 1 1.9881 0.9875 -2.3967 35 1 3.2116 -0.7049 -3.6407 36 1 1.6902 -1.6247 -3.7298 37 1 2.5372 -1.0633 -6.2255 38 1 2.9083 -1.3580 -9.5294 39 1 1.6054 -1.7198 1.2950 40 1 3.1263 -0.7996 1.2054 41 1 1.1484 0.8590 2.3518 42 1 0.5988 1.9270 3.7941 43 1 -0.0307 3.1428 5.8383 44 1 2.5126 -1.0093 6.2769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714378554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:01 Heat of formation + Delta-G solvation = -106.712710 kcal Electronic energy + Delta-G solvation = -27078.129376 eV Core-core repulsion = 22750.850537 eV Total energy + Delta-G solvation = -4327.278839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.17505 -41.72944 -40.29426 -40.09876 -38.27946 -36.24050 -35.71326 -34.27137 -33.33675 -33.05588 -31.95564 -28.85079 -27.94742 -26.73251 -25.66617 -24.72867 -24.15046 -21.96855 -21.56313 -20.97163 -19.92222 -19.58399 -18.53415 -17.80607 -17.64581 -17.28160 -17.10953 -16.94014 -16.80068 -16.55973 -16.39697 -15.97081 -15.60469 -15.41004 -15.19599 -15.12963 -14.77885 -14.59402 -14.45204 -14.17263 -13.90641 -13.55538 -13.40880 -13.22847 -13.15473 -12.99187 -12.83673 -12.39356 -12.10729 -12.00126 -11.95807 -11.70657 -11.54067 -11.49836 -11.26579 -10.84508 -10.32347 -10.23475 -10.18001 -10.00089 -9.27024 -8.45815 -5.94451 -0.59775 -0.25147 1.37688 1.43183 1.57120 1.63585 1.79993 2.07181 2.30187 2.43543 2.53557 2.95110 3.21930 3.32865 3.45891 3.54706 3.71366 3.72233 3.89143 3.97325 4.08028 4.31525 4.35000 4.45157 4.50494 4.52100 4.60840 4.64595 4.65382 4.76216 4.80329 4.87532 4.98564 5.11635 5.18042 5.37610 5.40831 5.42370 5.58665 5.90403 6.11929 6.32962 6.45436 6.46387 6.61265 6.98239 7.13955 7.58103 8.12964 8.71754 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.001408 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.610249 B =19882.126075 C =20412.435225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.089 0.911 4 C 0.065 3.935 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.575 5.575 10 C -0.333 4.333 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.272 1.272 17 H -0.272 1.272 18 C 0.129 3.871 19 N -0.699 5.699 20 C 0.558 3.442 21 O -0.567 6.567 22 C -0.067 4.067 23 C -0.131 4.131 24 C 0.141 3.859 25 N -0.522 5.522 26 C 0.288 3.712 27 F -0.119 7.119 28 C -0.146 4.146 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.345 0.655 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.418 0.582 42 H 0.189 0.811 43 H 0.215 0.785 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 2.945 27.312 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.107 0.893 4 C -0.065 4.065 5 N -0.309 5.309 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.212 5.212 10 C -0.463 4.463 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.197 1.197 18 C 0.005 3.995 19 N -0.351 5.351 20 C 0.344 3.656 21 O -0.446 6.446 22 C -0.078 4.078 23 C -0.151 4.151 24 C -0.016 4.016 25 N -0.238 5.238 26 C 0.136 3.864 27 F -0.098 7.098 28 C -0.168 4.168 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.257 0.743 42 H 0.206 0.794 43 H 0.231 0.769 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.719 2.931 28.030 28.314 hybrid contribution 1.245 -0.337 -1.307 1.837 sum -1.474 2.594 26.723 26.889 Atomic orbital electron populations 1.21740 0.93734 1.02018 1.02138 1.21215 0.97375 1.00284 0.91781 0.89291 1.21982 0.98260 0.97863 0.88363 1.60024 1.64667 1.05964 1.00203 1.21521 0.99067 0.98024 0.88166 1.20901 0.83826 0.87620 0.85066 1.90485 1.45519 1.28304 1.86503 1.41955 1.50086 1.24361 1.04816 1.19715 1.34317 1.06946 0.85312 0.90220 1.26032 0.96468 0.97562 1.01217 1.69681 1.39072 1.22514 1.24946 0.84873 0.78196 0.78011 0.77274 1.19684 1.19687 1.19735 1.21368 1.00171 0.95334 0.82605 1.45727 1.56568 1.28175 1.04650 1.18212 0.79270 0.84359 0.83719 1.90809 1.41256 1.25549 1.87033 1.20187 0.98790 0.96268 0.92569 1.22823 0.96220 0.93032 1.03068 1.23286 0.94421 0.99707 0.84163 1.66959 1.12598 1.12840 1.31381 1.18080 0.96469 0.91654 0.80208 1.91624 1.89913 1.88407 1.39836 1.21918 1.01746 1.02143 0.91003 0.93156 0.91210 0.92803 0.90407 0.94047 0.83605 0.91674 0.88005 0.77023 0.91359 0.91269 0.91293 0.74338 0.79420 0.76898 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.95 71.98 0.64 -1.37 16 2 C -0.09 -1.17 2.57 -10.79 -0.03 -1.20 16 3 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.06 1.20 5.07 86.31 0.44 1.63 16 5 N -0.68 -18.40 5.58 -517.92 -2.89 -21.29 16 6 C 0.06 2.05 6.17 85.56 0.53 2.58 16 7 C 0.44 20.03 7.82 87.66 0.69 20.72 16 8 O -0.62 -33.10 15.78 -3.06 -0.05 -33.15 16 9 N -0.57 -28.82 5.29 -306.99 -1.62 -30.44 16 10 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 11 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 14 Si 0.99 42.24 29.55 68.60 2.03 44.27 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 C 0.13 1.68 5.06 86.38 0.44 2.12 16 19 N -0.70 -7.24 5.24 -465.69 -2.44 -9.68 16 20 C 0.56 8.83 7.80 86.88 0.68 9.51 16 21 O -0.57 -13.94 16.44 -3.75 -0.06 -14.00 16 22 C -0.07 -0.82 5.91 -19.89 -0.12 -0.94 16 23 C -0.13 -0.67 9.61 22.63 0.22 -0.45 16 24 C 0.14 0.94 11.17 84.64 0.95 1.88 16 25 N -0.52 -7.80 10.35 -197.08 -2.04 -9.84 16 26 C 0.29 4.85 8.41 84.74 0.71 5.56 16 27 F -0.12 -2.25 17.29 44.97 0.78 -1.48 16 28 C -0.15 -2.24 9.66 22.69 0.22 -2.03 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.63 7.18 -2.39 -0.02 0.61 16 31 H 0.05 1.10 7.75 -2.39 -0.02 1.08 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.35 9.79 8.43 -89.69 -0.76 9.03 16 35 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.42 1.64 5.79 -92.71 -0.54 1.10 16 42 H 0.19 -0.56 6.53 -2.91 -0.02 -0.58 16 43 H 0.21 -0.30 8.06 -2.91 -0.02 -0.32 16 44 H 0.15 2.48 7.74 -2.91 -0.02 2.45 16 Total: -1.00 -75.94 383.26 -0.33 -76.26 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.95 Total: 28.18 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 6.64 Total: 19.98 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -8.71 Total: -120.06 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.11 Total: -47.15 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -75.94 -0.33 -76.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714378554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.450 kcal (2) G-P(sol) polarization free energy of solvation -75.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds