Wall clock time and date at job start Tue Mar 31 2020 21:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46997 * 2 1 4 4 C 1.36944 * 120.00167 * 271.94322 * 3 2 1 5 5 H 1.08004 * 119.99682 * 39.76147 * 4 3 2 6 6 C 1.38802 * 120.00071 * 219.75986 * 4 3 2 7 7 N 1.31621 * 120.00429 * 19.27903 * 6 4 3 8 8 Si 1.86801 * 120.00053 * 199.27051 * 6 4 3 9 9 H 1.48493 * 109.47103 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46913 * 120.00495 * 8 6 4 11 11 H 1.48500 * 109.47686 * 240.00181 * 8 6 4 12 12 C 1.46496 * 120.00002 * 91.94358 * 3 2 1 13 13 C 1.52991 * 109.47404 * 270.00134 * 12 3 2 14 14 N 1.46503 * 109.47655 * 179.97438 * 13 12 3 15 15 C 1.34774 * 120.00520 * 179.72555 * 14 13 12 16 16 O 1.21612 * 119.99480 * 0.26905 * 15 14 13 17 17 C 1.47349 * 120.00133 * 180.27841 * 15 14 13 18 18 C 1.39957 * 120.22231 * 89.72391 * 17 15 14 19 19 F 1.35096 * 120.07621 * 359.96885 * 18 17 15 20 20 C 1.38136 * 119.84376 * 179.72047 * 18 17 15 21 21 C 1.38433 * 120.30889 * 0.53324 * 20 18 17 22 22 C 1.38097 * 120.44886 * 359.76226 * 21 20 18 23 23 C 1.38780 * 120.14135 * 359.95490 * 22 21 20 24 24 N 1.39281 * 120.15092 * 179.97438 * 23 22 21 25 25 C 1.34770 * 120.00233 * 21.54055 * 24 23 22 26 26 N 1.34775 * 120.00423 * 185.17973 * 25 24 23 27 27 O 1.21584 * 119.99816 * 5.17596 * 25 24 23 28 28 H 1.09002 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46973 * 299.99335 * 1 2 3 30 30 H 1.08997 * 109.47792 * 60.00095 * 1 2 3 31 31 H 1.09007 * 109.46879 * 240.00118 * 2 1 3 32 32 H 1.08997 * 109.47231 * 120.00422 * 2 1 3 33 33 H 0.96994 * 120.00396 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47267 * 149.99463 * 12 3 2 35 35 H 1.09004 * 109.46828 * 30.00038 * 12 3 2 36 36 H 1.09001 * 109.47457 * 59.99445 * 13 12 3 37 37 H 1.09004 * 109.47049 * 299.99768 * 13 12 3 38 38 H 0.97004 * 119.99285 * 0.02562 * 14 13 12 39 39 H 1.08005 * 119.84962 * 180.29733 * 20 18 17 40 40 H 1.08004 * 119.77767 * 179.74268 * 21 20 18 41 41 H 1.07999 * 119.93366 * 179.97438 * 22 21 20 42 42 H 0.96998 * 119.99840 * 201.53277 * 24 23 22 43 43 H 0.97003 * 119.99749 * 0.02562 * 26 25 24 44 44 H 0.96997 * 120.00097 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2086 2.0402 -1.1853 5 1 1.5009 1.9163 -1.9917 6 6 3.3110 2.8673 -1.3502 7 7 4.3537 2.7404 -0.5571 8 14 3.3149 4.1607 -2.6981 9 1 2.0335 4.1001 -3.4459 10 1 3.4704 5.5073 -2.0915 11 1 4.4438 3.9034 -3.6279 12 6 2.3030 2.0575 1.2680 13 6 1.0430 2.7734 1.7583 14 7 1.3275 3.4492 3.0267 15 6 0.3602 4.1535 3.6468 16 8 -0.7502 4.2241 3.1560 17 6 0.6481 4.8383 4.9194 18 6 1.1230 6.1549 4.9192 19 9 1.3199 6.8034 3.7506 20 6 1.3849 6.7913 6.1169 21 6 1.1903 6.1292 7.3170 22 6 0.7281 4.8280 7.3315 23 6 0.4534 4.1727 6.1394 24 7 -0.0123 2.8602 6.1537 25 6 -0.6036 2.3670 7.2598 26 7 -0.9600 1.0682 7.3114 27 8 -0.8155 3.0937 8.2113 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.1239 3.3186 -0.6722 34 1 3.1005 2.7857 1.1203 35 1 2.6151 1.3223 2.0097 36 1 0.2455 2.0452 1.9060 37 1 0.7309 3.5086 1.0166 38 1 2.2134 3.3932 3.4179 39 1 1.7467 7.8089 6.1171 40 1 1.4018 6.6337 8.2483 41 1 0.5797 4.3193 8.2725 42 1 0.0889 2.3011 5.3676 43 1 -0.7905 0.4883 6.5525 44 1 -1.3852 0.7132 8.1076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714593537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:54 Heat of formation + Delta-G solvation = -59.262817 kcal Electronic energy + Delta-G solvation = -29637.307673 eV Core-core repulsion = 25312.086416 eV Total energy + Delta-G solvation = -4325.221257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.97673 -41.17518 -39.53337 -38.17515 -36.36334 -35.11971 -34.17557 -34.06464 -31.94470 -31.33411 -29.66558 -29.46970 -27.58853 -24.63183 -23.80366 -23.70192 -21.84723 -21.31720 -20.62567 -20.23291 -18.91502 -18.66499 -17.76723 -16.95728 -16.61509 -16.50052 -16.00562 -15.56157 -15.40348 -15.29636 -15.21415 -15.01442 -14.71250 -14.50188 -13.85827 -13.79169 -13.57232 -13.28803 -12.84927 -12.69660 -12.43583 -12.33564 -12.13563 -11.89680 -11.61185 -11.16924 -10.93078 -10.82827 -10.72363 -10.53718 -10.45587 -10.18373 -10.10386 -9.96856 -9.93419 -9.69426 -8.98940 -8.70614 -8.54358 -8.37208 -6.65890 -5.88419 -3.51103 0.77300 0.98556 2.27264 2.61617 2.67037 3.28671 3.33903 3.41635 3.44491 3.47545 3.90053 4.09959 4.41939 4.58456 4.75988 4.87013 5.06830 5.13724 5.24653 5.46855 5.58062 5.73724 5.84803 5.88044 6.01526 6.06715 6.10698 6.16082 6.29335 6.30687 6.33498 6.39727 6.45358 6.59999 6.68323 6.70705 6.84554 6.92549 7.08503 7.34910 7.45424 7.71973 7.76283 8.06453 8.33818 8.44992 9.09666 9.70112 10.28645 11.11548 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.003499 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.568402 B = 8000.337254 C = 9696.308755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.265 4.265 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.288 1.288 12 C 0.139 3.861 13 C 0.094 3.906 14 N -0.710 5.710 15 C 0.553 3.447 16 O -0.527 6.527 17 C -0.197 4.197 18 C 0.157 3.843 19 F -0.125 7.125 20 C -0.178 4.178 21 C -0.055 4.055 22 C -0.153 4.153 23 C 0.231 3.769 24 N -0.675 5.675 25 C 0.711 3.289 26 N -0.857 5.857 27 O -0.571 6.571 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.029 0.971 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.165 0.835 42 H 0.412 0.588 43 H 0.402 0.598 44 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -0.739 17.951 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.299 5.299 4 C -0.394 4.394 5 H 0.079 0.921 6 C -0.183 4.183 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.215 1.215 12 C 0.012 3.988 13 C -0.031 4.031 14 N -0.360 5.360 15 C 0.337 3.663 16 O -0.404 6.404 17 C -0.204 4.204 18 C 0.136 3.864 19 F -0.103 7.103 20 C -0.198 4.198 21 C -0.074 4.074 22 C -0.173 4.173 23 C 0.132 3.868 24 N -0.321 5.321 25 C 0.410 3.590 26 N -0.425 5.425 27 O -0.448 6.448 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.182 0.818 42 H 0.249 0.751 43 H 0.231 0.769 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.540 -0.015 18.216 19.040 hybrid contribution 0.360 0.171 -1.292 1.352 sum -5.181 0.157 16.924 17.700 Atomic orbital electron populations 1.22419 0.99997 0.99075 1.01357 1.20886 0.91613 0.87022 0.98959 1.43583 1.76460 1.08189 1.01679 1.19051 1.04020 1.23739 0.92613 0.92108 1.25248 0.94244 1.00989 0.97862 1.69969 1.04221 1.38464 1.40244 0.86336 0.77767 0.81745 0.81621 1.19916 1.21260 1.21487 1.21030 0.94392 0.96632 0.86775 1.22617 1.01715 0.96221 0.82556 1.46284 1.13656 1.51179 1.24890 1.17928 0.85324 0.79312 0.83758 1.90827 1.22526 1.61021 1.65993 1.19628 1.11920 0.95115 0.93754 1.17287 0.98161 0.88979 0.81962 1.91576 1.92227 1.80489 1.46046 1.21063 1.06177 1.01831 0.90756 1.21015 0.95069 0.93749 0.97546 1.21624 1.01454 0.95866 0.98364 1.17068 0.94117 0.83359 0.92237 1.42442 1.60547 1.12418 1.16645 1.15821 0.77806 0.82770 0.82565 1.42958 1.67616 1.09003 1.22900 1.90912 1.59931 1.57461 1.36528 0.94440 0.93773 0.93080 0.93324 0.94941 0.93473 0.88474 0.95274 0.92716 0.91431 0.76647 0.84117 0.84266 0.81802 0.75140 0.76910 0.74650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.23 37.16 0.38 -2.56 16 2 C 0.14 2.81 6.43 -4.04 -0.03 2.79 16 3 N -0.58 -13.53 2.41 -173.24 -0.42 -13.95 16 4 C -0.26 -6.96 9.45 -15.06 -0.14 -7.11 16 5 H 0.06 1.62 7.90 -52.48 -0.41 1.21 16 6 C 0.02 0.46 4.99 -17.43 -0.09 0.38 16 7 N -0.89 -24.36 11.50 55.49 0.64 -23.72 16 8 Si 0.90 21.25 29.60 -169.99 -5.03 16.22 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.14 2.95 5.44 -4.05 -0.02 2.93 16 13 C 0.09 1.80 6.00 -4.04 -0.02 1.78 16 14 N -0.71 -11.47 5.55 -61.41 -0.34 -11.81 16 15 C 0.55 9.45 5.76 -12.56 -0.07 9.38 16 16 O -0.53 -11.04 17.11 5.27 0.09 -10.95 16 17 C -0.20 -2.86 5.65 -104.76 -0.59 -3.45 16 18 C 0.16 2.20 7.29 -38.98 -0.28 1.91 16 19 F -0.13 -2.01 16.83 2.25 0.04 -1.98 16 20 C -0.18 -1.92 10.00 -39.55 -0.40 -2.31 16 21 C -0.05 -0.53 10.02 -39.56 -0.40 -0.92 16 22 C -0.15 -1.75 8.74 -39.43 -0.34 -2.09 16 23 C 0.23 2.93 6.49 -83.49 -0.54 2.39 16 24 N -0.68 -7.42 5.20 -14.05 -0.07 -7.49 16 25 C 0.71 7.58 8.67 -86.93 -0.75 6.83 16 26 N -0.86 -5.35 8.88 27.63 0.25 -5.11 16 27 O -0.57 -7.76 14.14 5.29 0.07 -7.69 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.76 6.39 -51.93 -0.33 0.42 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 1.00 8.06 -51.92 -0.42 0.58 16 32 H 0.03 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 34 H 0.10 2.36 5.60 -51.93 -0.29 2.07 16 35 H 0.03 0.56 7.88 -51.93 -0.41 0.15 16 36 H 0.05 1.03 6.39 -51.93 -0.33 0.70 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.40 5.61 8.46 -40.82 -0.35 5.26 16 39 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.16 1.92 5.52 -52.49 -0.29 1.63 16 42 H 0.41 4.10 7.83 -40.82 -0.32 3.78 16 43 H 0.40 1.61 8.85 -40.82 -0.36 1.25 16 44 H 0.42 1.97 8.93 -40.82 -0.36 1.60 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -33.60 376.23 -7.94 -41.54 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.53 Total: 9.33 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -3.30 Total: 9.93 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.05 Total: -62.08 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.16 Total: -18.64 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.60 -7.94 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714593537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.719 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds