Wall clock time and date at job start Tue Mar 31 2020 21:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46997 * 2 1 4 4 C 1.36944 * 120.00167 * 271.94322 * 3 2 1 5 5 H 1.08004 * 119.99682 * 39.76147 * 4 3 2 6 6 C 1.38802 * 120.00071 * 219.75986 * 4 3 2 7 7 N 1.31621 * 120.00429 * 19.27903 * 6 4 3 8 8 Si 1.86801 * 120.00053 * 199.27051 * 6 4 3 9 9 H 1.48493 * 109.47103 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46913 * 120.00495 * 8 6 4 11 11 H 1.48500 * 109.47686 * 240.00181 * 8 6 4 12 12 C 1.46496 * 120.00002 * 91.94358 * 3 2 1 13 13 C 1.52991 * 109.47404 * 270.00134 * 12 3 2 14 14 N 1.46503 * 109.47655 * 179.97438 * 13 12 3 15 15 C 1.34774 * 120.00520 * 179.72555 * 14 13 12 16 16 O 1.21612 * 119.99480 * 0.26905 * 15 14 13 17 17 C 1.47349 * 120.00133 * 180.27841 * 15 14 13 18 18 C 1.39957 * 120.22231 * 89.72391 * 17 15 14 19 19 F 1.35096 * 120.07621 * 359.96885 * 18 17 15 20 20 C 1.38136 * 119.84376 * 179.72047 * 18 17 15 21 21 C 1.38433 * 120.30889 * 0.53324 * 20 18 17 22 22 C 1.38097 * 120.44886 * 359.76226 * 21 20 18 23 23 C 1.38780 * 120.14135 * 359.95490 * 22 21 20 24 24 N 1.39281 * 120.15092 * 179.97438 * 23 22 21 25 25 C 1.34770 * 120.00233 * 21.54055 * 24 23 22 26 26 N 1.34775 * 120.00423 * 185.17973 * 25 24 23 27 27 O 1.21584 * 119.99816 * 5.17596 * 25 24 23 28 28 H 1.09002 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46973 * 299.99335 * 1 2 3 30 30 H 1.08997 * 109.47792 * 60.00095 * 1 2 3 31 31 H 1.09007 * 109.46879 * 240.00118 * 2 1 3 32 32 H 1.08997 * 109.47231 * 120.00422 * 2 1 3 33 33 H 0.96994 * 120.00396 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47267 * 149.99463 * 12 3 2 35 35 H 1.09004 * 109.46828 * 30.00038 * 12 3 2 36 36 H 1.09001 * 109.47457 * 59.99445 * 13 12 3 37 37 H 1.09004 * 109.47049 * 299.99768 * 13 12 3 38 38 H 0.97004 * 119.99285 * 0.02562 * 14 13 12 39 39 H 1.08005 * 119.84962 * 180.29733 * 20 18 17 40 40 H 1.08004 * 119.77767 * 179.74268 * 21 20 18 41 41 H 1.07999 * 119.93366 * 179.97438 * 22 21 20 42 42 H 0.96998 * 119.99840 * 201.53277 * 24 23 22 43 43 H 0.97003 * 119.99749 * 0.02562 * 26 25 24 44 44 H 0.96997 * 120.00097 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2086 2.0402 -1.1853 5 1 1.5009 1.9163 -1.9917 6 6 3.3110 2.8673 -1.3502 7 7 4.3537 2.7404 -0.5571 8 14 3.3149 4.1607 -2.6981 9 1 2.0335 4.1001 -3.4459 10 1 3.4704 5.5073 -2.0915 11 1 4.4438 3.9034 -3.6279 12 6 2.3030 2.0575 1.2680 13 6 1.0430 2.7734 1.7583 14 7 1.3275 3.4492 3.0267 15 6 0.3602 4.1535 3.6468 16 8 -0.7502 4.2241 3.1560 17 6 0.6481 4.8383 4.9194 18 6 1.1230 6.1549 4.9192 19 9 1.3199 6.8034 3.7506 20 6 1.3849 6.7913 6.1169 21 6 1.1903 6.1292 7.3170 22 6 0.7281 4.8280 7.3315 23 6 0.4534 4.1727 6.1394 24 7 -0.0123 2.8602 6.1537 25 6 -0.6036 2.3670 7.2598 26 7 -0.9600 1.0682 7.3114 27 8 -0.8155 3.0937 8.2113 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.1239 3.3186 -0.6722 34 1 3.1005 2.7857 1.1203 35 1 2.6151 1.3223 2.0097 36 1 0.2455 2.0452 1.9060 37 1 0.7309 3.5086 1.0166 38 1 2.2134 3.3932 3.4179 39 1 1.7467 7.8089 6.1171 40 1 1.4018 6.6337 8.2483 41 1 0.5797 4.3193 8.2725 42 1 0.0889 2.3011 5.3676 43 1 -0.7905 0.4883 6.5525 44 1 -1.3852 0.7132 8.1076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714593537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:53 Heat of formation + Delta-G solvation = -84.585926 kcal Electronic energy + Delta-G solvation = -29638.405766 eV Core-core repulsion = 25312.086416 eV Total energy + Delta-G solvation = -4326.319350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.10849 -42.10190 -40.76083 -39.21452 -38.08870 -36.01333 -35.71995 -34.75981 -33.84596 -32.45163 -31.11322 -30.45122 -29.25935 -26.31781 -25.07397 -24.59947 -23.33334 -22.21034 -22.15755 -21.71904 -19.84767 -19.50767 -19.03439 -18.40423 -17.75001 -17.49651 -17.32040 -16.99047 -16.64623 -16.51385 -16.32000 -16.05154 -16.02670 -15.57455 -15.46830 -15.44430 -14.93844 -14.48475 -14.16521 -14.04425 -13.80089 -13.76601 -13.28914 -13.21558 -13.03865 -12.89261 -12.67460 -12.39653 -12.28590 -12.07759 -11.80633 -11.69061 -11.52901 -11.33073 -11.18319 -10.79559 -10.57905 -10.18549 -9.98523 -9.26619 -8.58461 -7.87317 -5.53900 -0.17548 0.06079 1.24350 1.40534 1.46301 1.49967 1.54203 1.84633 2.01812 2.47691 2.52426 3.09068 3.20836 3.28028 3.46876 3.79051 3.84372 3.92207 4.20023 4.28478 4.29484 4.38561 4.48149 4.68529 4.73630 4.81576 4.85890 4.87680 5.03114 5.10091 5.17425 5.22369 5.28445 5.30671 5.32007 5.57762 5.60911 5.64053 5.72728 5.80764 5.87490 6.34622 6.46494 6.64879 6.98465 7.15140 7.34266 7.81540 8.33187 9.07581 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.003499 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.568402 B = 8000.337254 C = 9696.308755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.596 5.596 4 C -0.272 4.272 5 H 0.050 0.950 6 C -0.024 4.024 7 N -0.909 5.909 8 Si 0.946 3.054 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.285 1.285 12 C 0.147 3.853 13 C 0.116 3.884 14 N -0.698 5.698 15 C 0.560 3.440 16 O -0.571 6.571 17 C -0.217 4.217 18 C 0.131 3.869 19 F -0.145 7.145 20 C -0.168 4.168 21 C -0.036 4.036 22 C -0.155 4.155 23 C 0.227 3.773 24 N -0.674 5.674 25 C 0.706 3.294 26 N -0.835 5.835 27 O -0.602 6.602 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.253 0.747 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.412 0.588 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.166 0.834 42 H 0.416 0.584 43 H 0.415 0.585 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 -1.083 20.074 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.318 5.318 4 C -0.402 4.402 5 H 0.068 0.932 6 C -0.222 4.222 7 N -0.553 5.553 8 Si 0.775 3.225 9 H -0.197 1.197 10 H -0.218 1.218 11 H -0.211 1.211 12 C 0.020 3.980 13 C -0.010 4.010 14 N -0.349 5.349 15 C 0.346 3.654 16 O -0.451 6.451 17 C -0.224 4.224 18 C 0.110 3.890 19 F -0.124 7.124 20 C -0.187 4.187 21 C -0.054 4.054 22 C -0.176 4.176 23 C 0.128 3.872 24 N -0.320 5.320 25 C 0.405 3.595 26 N -0.404 5.404 27 O -0.482 6.482 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.248 0.752 39 H 0.186 0.814 40 H 0.198 0.802 41 H 0.183 0.817 42 H 0.252 0.748 43 H 0.246 0.754 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.662 -0.423 20.346 21.124 hybrid contribution 0.375 0.214 -1.863 1.913 sum -5.287 -0.210 18.483 19.225 Atomic orbital electron populations 1.22245 0.97906 1.00935 1.00428 1.21025 0.93119 0.85247 0.99424 1.43817 1.76812 1.09687 1.01446 1.19176 1.03513 1.24056 0.93485 0.93202 1.25776 0.94204 1.02513 0.99744 1.70053 1.04548 1.39142 1.41522 0.85550 0.77687 0.79527 0.79749 1.19717 1.21833 1.21133 1.20886 0.94035 0.96470 0.86657 1.22118 1.00871 0.95150 0.82837 1.46091 1.14298 1.50751 1.23752 1.18279 0.84422 0.78428 0.84296 1.90794 1.24304 1.62522 1.67449 1.19418 1.14566 0.95657 0.92802 1.17699 0.99704 0.89122 0.82437 1.91522 1.92617 1.80833 1.47415 1.21385 1.04834 1.02849 0.89644 1.21479 0.92472 0.92809 0.98671 1.21805 1.01327 0.96701 0.97736 1.17203 0.94020 0.84047 0.91958 1.42445 1.60507 1.12025 1.16996 1.15992 0.77770 0.83719 0.81990 1.42800 1.66245 1.07572 1.23774 1.90884 1.61274 1.58573 1.37445 0.91132 0.93613 0.95042 0.94478 0.92791 0.93721 0.91461 0.92990 0.91909 0.95394 0.75218 0.81403 0.80209 0.81652 0.74771 0.75358 0.73484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 10.23 71.98 0.74 -4.45 16 2 C 0.14 5.30 6.43 86.38 0.56 5.86 16 3 N -0.60 -27.98 2.41 -702.02 -1.69 -29.68 16 4 C -0.27 -14.54 9.45 84.03 0.79 -13.75 16 5 H 0.05 2.73 7.90 -2.91 -0.02 2.70 16 6 C -0.02 -1.30 4.99 84.86 0.42 -0.87 16 7 N -0.91 -50.66 11.50 21.65 0.25 -50.41 16 8 Si 0.95 44.43 29.60 68.60 2.03 46.46 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 C 0.15 6.23 5.44 86.38 0.47 6.70 16 13 C 0.12 4.53 6.00 86.38 0.52 5.05 16 14 N -0.70 -22.82 5.55 -466.45 -2.59 -25.41 16 15 C 0.56 19.46 5.76 86.64 0.50 19.96 16 16 O -0.57 -24.59 17.11 -4.07 -0.07 -24.66 16 17 C -0.22 -6.27 5.65 -19.95 -0.11 -6.39 16 18 C 0.13 3.60 7.29 22.66 0.17 3.76 16 19 F -0.15 -4.76 16.83 44.97 0.76 -4.00 16 20 C -0.17 -3.19 10.00 22.29 0.22 -2.97 16 21 C -0.04 -0.57 10.02 22.28 0.22 -0.35 16 22 C -0.16 -3.22 8.74 22.37 0.20 -3.03 16 23 C 0.23 5.54 6.49 38.60 0.25 5.79 16 24 N -0.67 -14.14 5.20 -316.64 -1.65 -15.79 16 25 C 0.71 14.05 8.67 179.06 1.55 15.61 16 26 N -0.83 -8.81 8.88 -184.76 -1.64 -10.45 16 27 O -0.60 -15.55 14.14 -3.98 -0.06 -15.61 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.49 6.39 -2.38 -0.02 1.48 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.50 8.06 -2.38 -0.02 1.48 16 32 H 0.05 1.85 7.87 -2.39 -0.02 1.83 16 33 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.07 3.33 5.60 -2.39 -0.01 3.32 16 35 H 0.05 1.94 7.88 -2.39 -0.02 1.92 16 36 H 0.06 2.35 6.39 -2.39 -0.02 2.34 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.41 11.55 8.46 -92.71 -0.78 10.76 16 39 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.17 3.52 5.52 -2.91 -0.02 3.50 16 42 H 0.42 7.89 7.83 -92.71 -0.73 7.17 16 43 H 0.42 2.41 8.85 -92.71 -0.82 1.59 16 44 H 0.43 3.12 8.93 -92.71 -0.83 2.30 16 Total: -1.00 -74.61 376.23 -0.22 -74.83 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -2.05 Total: 23.78 kcal Atomic # 6 Polarization: 24.44 SS G_CDS: 6.49 Total: 30.93 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -7.32 Total: -131.74 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.13 Total: -40.27 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.76 Total: -4.00 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -74.61 -0.22 -74.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714593537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.753 kcal (2) G-P(sol) polarization free energy of solvation -74.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds