Wall clock time and date at job start Tue Mar 31 2020 20:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47245 * 2 1 4 4 C 1.52997 * 109.47213 * 239.99902 * 2 1 3 5 5 N 1.46506 * 109.46943 * 65.00340 * 4 2 1 6 6 C 1.36938 * 119.99771 * 179.72498 * 5 4 2 7 7 H 1.07997 * 120.00087 * 0.27204 * 6 5 4 8 8 C 1.38812 * 119.99728 * 180.27184 * 6 5 4 9 9 N 1.31618 * 120.00061 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99901 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47011 * 90.00034 * 10 8 6 12 12 H 1.48495 * 109.46910 * 209.99940 * 10 8 6 13 13 H 1.48494 * 109.46879 * 329.99815 * 10 8 6 14 14 C 1.53002 * 109.47292 * 119.99805 * 2 1 3 15 15 N 1.46501 * 109.47154 * 295.00360 * 14 2 1 16 16 C 1.34778 * 119.99768 * 179.97438 * 15 14 2 17 17 O 1.21608 * 120.00245 * 359.97438 * 16 15 14 18 18 C 1.47355 * 119.99799 * 179.97438 * 16 15 14 19 19 C 1.39952 * 120.22196 * 269.99860 * 18 16 15 20 20 F 1.35105 * 120.07570 * 359.97438 * 19 18 16 21 21 C 1.38131 * 119.85347 * 179.97438 * 19 18 16 22 22 C 1.38437 * 120.30097 * 0.02562 * 21 19 18 23 23 C 1.38088 * 120.45278 * 359.97438 * 22 21 19 24 24 C 1.38787 * 120.14023 * 359.73983 * 23 22 21 25 25 N 1.39280 * 120.15399 * 180.28158 * 24 23 22 26 26 C 1.34774 * 120.00262 * 24.83673 * 25 24 23 27 27 N 1.34778 * 120.00303 * 185.63024 * 26 25 24 28 28 O 1.21585 * 119.99873 * 5.62611 * 26 25 24 29 29 H 1.08997 * 109.47239 * 300.00020 * 1 2 3 30 30 H 1.08997 * 109.47109 * 59.99513 * 1 2 3 31 31 H 1.09003 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47585 * 305.00139 * 4 2 1 33 33 H 1.08996 * 109.47255 * 184.99558 * 4 2 1 34 34 H 0.96996 * 120.00113 * 359.97438 * 5 4 2 35 35 H 0.97003 * 119.99674 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46515 * 55.00180 * 14 2 1 37 37 H 1.08993 * 109.47021 * 174.99855 * 14 2 1 38 38 H 0.96996 * 119.99857 * 359.97438 * 15 14 2 39 39 H 1.07997 * 119.85398 * 179.97438 * 21 19 18 40 40 H 1.08003 * 119.77491 * 179.97438 * 22 21 19 41 41 H 1.07997 * 119.93367 * 179.97438 * 23 22 21 42 42 H 0.97005 * 119.99819 * 204.84132 * 25 24 23 43 43 H 0.96997 * 119.99772 * 359.97438 * 27 26 25 44 44 H 0.96998 * 120.00236 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 2.0064 -0.4175 -3.6852 7 1 2.5674 -1.3348 -3.7861 8 6 1.6441 0.3024 -4.8154 9 7 0.9600 1.4200 -4.6925 10 14 2.1264 -0.3159 -6.5110 11 1 1.0575 -1.2025 -7.0371 12 1 2.3063 0.8395 -7.4263 13 1 3.3985 -1.0760 -6.4173 14 6 2.0400 -0.7212 1.2493 15 7 1.6524 0.0354 2.4424 16 6 1.9956 -0.4136 3.6660 17 8 2.6265 -1.4469 3.7797 18 6 1.6062 0.3477 4.8660 19 6 2.4538 1.3362 5.3790 20 9 3.6341 1.5960 4.7752 21 6 2.0810 2.0456 6.5041 22 6 0.8728 1.7829 7.1269 23 6 0.0269 0.8104 6.6315 24 6 0.3803 0.0905 5.4987 25 7 -0.4753 -0.8864 4.9954 26 6 -1.7976 -0.8189 5.2473 27 7 -2.6099 -1.8216 4.8582 28 8 -2.2577 0.1466 5.8256 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 1.1483 0.8591 -2.3518 35 1 0.7071 1.9233 -5.4823 36 1 1.6054 -1.7198 1.2951 37 1 3.1263 -0.7994 1.2056 38 1 1.1488 0.8594 2.3517 39 1 2.7352 2.8081 6.9001 40 1 0.5900 2.3424 8.0063 41 1 -0.9134 0.6121 7.1242 42 1 -0.1195 -1.6155 4.4635 43 1 -2.2428 -2.5916 4.3966 44 1 -3.5614 -1.7731 5.0399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715257568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:02 Heat of formation + Delta-G solvation = -74.952428 kcal Electronic energy + Delta-G solvation = -28937.473489 eV Core-core repulsion = 24611.571880 eV Total energy + Delta-G solvation = -4325.901610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.22281 -41.34954 -39.88760 -38.48633 -36.87139 -35.27014 -34.44162 -34.18162 -32.64306 -31.33455 -30.00920 -29.74220 -26.71973 -25.55847 -24.01942 -23.88913 -22.41280 -21.46315 -20.85830 -20.07072 -19.04189 -18.82622 -18.04774 -17.15753 -16.95620 -16.75462 -16.39929 -15.82001 -15.70769 -15.51085 -15.45607 -15.15474 -14.87499 -14.61111 -14.19421 -14.01239 -13.66597 -13.49429 -13.09309 -13.00287 -12.71309 -12.49391 -12.36566 -12.12737 -12.11042 -11.11045 -11.08391 -10.95375 -10.76172 -10.67703 -10.63453 -10.50340 -10.25873 -10.19730 -10.00857 -9.70426 -9.22061 -9.19677 -8.90278 -8.57568 -6.95168 -5.79284 -3.07980 0.55456 0.78072 2.11132 2.25991 2.52550 2.94235 3.24647 3.42175 3.47564 3.49236 3.75654 3.88731 4.32402 4.50050 4.56784 4.63145 4.85794 4.93485 4.97237 5.13852 5.31903 5.38526 5.55009 5.55782 5.64848 5.71401 5.86216 5.90203 5.91338 5.98474 6.04031 6.15163 6.16816 6.29915 6.33326 6.35360 6.47740 6.59710 6.72390 6.80866 7.20519 7.27391 7.68099 7.92493 7.93766 8.39683 9.51021 10.07890 10.42565 11.43656 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.002413 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.877443 B =11599.019746 C =12618.091852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.162 3.838 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.124 3.876 15 N -0.710 5.710 16 C 0.561 3.439 17 O -0.528 6.528 18 C -0.201 4.201 19 C 0.157 3.843 20 F -0.126 7.126 21 C -0.177 4.177 22 C -0.052 4.052 23 C -0.146 4.146 24 C 0.234 3.766 25 N -0.679 5.679 26 C 0.710 3.290 27 N -0.856 5.856 28 O -0.569 6.569 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.404 0.596 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.413 0.587 43 H 0.402 0.598 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.946 -2.825 26.877 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.001 3.999 15 N -0.361 5.361 16 C 0.345 3.655 17 O -0.405 6.405 18 C -0.209 4.209 19 C 0.136 3.864 20 F -0.105 7.105 21 C -0.196 4.196 22 C -0.071 4.071 23 C -0.167 4.167 24 C 0.136 3.864 25 N -0.325 5.325 26 C 0.409 3.591 27 N -0.424 5.424 28 O -0.446 6.446 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.239 0.761 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.177 0.823 42 H 0.250 0.750 43 H 0.231 0.769 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.690 -2.878 27.232 27.782 hybrid contribution 0.074 -0.301 -1.672 1.700 sum -4.616 -3.179 25.560 26.167 Atomic orbital electron populations 1.21786 0.94645 1.01803 1.01588 1.21567 0.96708 1.00684 0.94086 0.90373 1.20561 0.96653 0.94134 0.85318 1.42338 1.66803 1.27813 1.00588 1.19228 1.28781 1.05408 0.83656 0.91152 1.24741 1.01013 0.97354 0.97885 1.69656 1.43579 1.16492 1.28541 0.86179 0.78042 0.77521 0.84394 1.21722 1.21759 1.20739 1.21515 1.00551 0.95128 0.82696 1.46145 1.56596 1.27775 1.05552 1.17883 0.79662 0.84963 0.82996 1.90846 1.39046 1.23919 1.86680 1.19482 0.97800 1.03017 1.00563 1.17262 0.81706 0.94614 0.92802 1.91569 1.43693 1.92737 1.82458 1.21078 0.99342 1.02877 0.96349 1.21039 0.91826 0.95536 0.98669 1.21477 1.02374 0.97865 0.94974 1.17032 0.87464 0.89945 0.91970 1.42491 1.05980 1.28246 1.55762 1.15832 0.80515 0.83324 0.79394 1.42964 1.11858 1.22578 1.64982 1.90967 1.74716 1.32360 1.46556 0.94019 0.91030 0.92868 0.96026 0.96077 0.78194 0.93499 0.91106 0.90930 0.76110 0.83965 0.84108 0.82282 0.75041 0.76935 0.74523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.94 37.16 0.33 -1.66 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.73 -18.09 5.33 -59.91 -0.32 -18.41 16 6 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.12 1.63 5.06 -4.04 -0.02 1.61 16 15 N -0.71 -8.37 5.28 -61.41 -0.32 -8.70 16 16 C 0.56 7.26 5.80 -12.55 -0.07 7.19 16 17 O -0.53 -8.47 17.11 5.27 0.09 -8.38 16 18 C -0.20 -2.28 5.65 -104.76 -0.59 -2.87 16 19 C 0.16 1.72 7.29 -38.98 -0.28 1.43 16 20 F -0.13 -1.58 16.83 2.25 0.04 -1.55 16 21 C -0.18 -1.46 10.00 -39.55 -0.40 -1.86 16 22 C -0.05 -0.39 10.02 -39.56 -0.40 -0.78 16 23 C -0.15 -1.35 8.70 -39.43 -0.34 -1.70 16 24 C 0.23 2.37 6.44 -83.49 -0.54 1.83 16 25 N -0.68 -5.80 5.17 -14.05 -0.07 -5.88 16 26 C 0.71 6.21 8.63 -86.92 -0.75 5.46 16 27 N -0.86 -4.08 8.88 27.63 0.25 -3.84 16 28 O -0.57 -6.79 14.33 5.29 0.08 -6.71 16 29 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 4.27 7.64 -40.82 -0.31 3.96 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.16 1.54 5.78 -52.49 -0.30 1.24 16 42 H 0.41 3.13 7.91 -40.82 -0.32 2.81 16 43 H 0.40 0.99 8.85 -40.82 -0.36 0.63 16 44 H 0.42 1.51 8.93 -40.82 -0.36 1.15 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -35.21 378.42 -8.03 -43.25 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.62 Total: 11.93 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.55 Total: 2.56 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 0.25 Total: -64.11 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.17 Total: -15.09 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.21 -8.03 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715257568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.706 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds