Wall clock time and date at job start Tue Mar 31 2020 20:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46361 * 2 1 4 4 C 1.52997 * 109.46971 * 119.99928 * 2 1 3 5 5 N 1.46504 * 109.47308 * 295.00400 * 4 2 1 6 6 C 1.36940 * 120.00094 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99496 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31609 * 120.00566 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99355 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47024 * 90.00342 * 10 8 6 12 12 H 1.48503 * 109.46710 * 209.99634 * 10 8 6 13 13 H 1.48497 * 109.47418 * 329.99987 * 10 8 6 14 14 C 1.52997 * 109.46975 * 239.99955 * 2 1 3 15 15 N 1.46507 * 109.47253 * 65.00139 * 14 2 1 16 16 C 1.34768 * 119.99987 * 179.97438 * 15 14 2 17 17 O 1.21607 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.47363 * 120.00043 * 179.97438 * 16 15 14 19 19 C 1.39957 * 120.21798 * 89.72598 * 18 16 15 20 20 F 1.35101 * 120.07322 * 0.25114 * 19 18 16 21 21 C 1.38131 * 119.84463 * 180.30189 * 19 18 16 22 22 C 1.38432 * 120.30897 * 359.95392 * 21 19 18 23 23 C 1.38100 * 120.44840 * 0.04447 * 22 21 19 24 24 C 1.38780 * 120.14262 * 359.97438 * 23 22 21 25 25 N 1.39273 * 120.15161 * 179.97438 * 24 23 22 26 26 C 1.34778 * 120.00406 * 24.84158 * 25 24 23 27 27 N 1.34773 * 120.00111 * 185.62192 * 26 25 24 28 28 O 1.21584 * 119.99590 * 5.62926 * 26 25 24 29 29 H 1.09002 * 109.47446 * 299.99546 * 1 2 3 30 30 H 1.08992 * 109.47406 * 60.00281 * 1 2 3 31 31 H 1.09005 * 109.46759 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47187 * 55.00572 * 4 2 1 33 33 H 1.08994 * 109.47100 * 175.00451 * 4 2 1 34 34 H 0.96996 * 119.99810 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00448 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47676 * 304.99666 * 14 2 1 37 37 H 1.09007 * 109.46492 * 184.99463 * 14 2 1 38 38 H 0.97001 * 119.99560 * 359.97438 * 15 14 2 39 39 H 1.08003 * 119.84340 * 179.97438 * 21 19 18 40 40 H 1.08001 * 119.77912 * 180.02562 * 22 21 19 41 41 H 1.08001 * 119.92805 * 180.02562 * 23 22 21 42 42 H 0.97003 * 119.99648 * 204.84191 * 25 24 23 43 43 H 0.96996 * 120.00104 * 0.02562 * 27 26 25 44 44 H 0.97003 * 119.99795 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6523 0.0353 2.4424 6 6 2.0018 -0.4203 3.6856 7 1 2.5629 -1.3376 3.7864 8 6 1.6349 0.2969 4.8160 9 7 0.9517 1.4150 4.6931 10 14 2.1111 -0.3251 6.5119 11 1 3.4338 0.2336 6.8907 12 1 1.0905 0.1048 7.5013 13 1 2.1874 -1.8080 6.4919 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0354 -2.4424 16 6 1.9964 -0.4131 -3.6659 17 8 2.6281 -1.4460 -3.7795 18 6 1.6061 0.3477 -4.8661 19 6 2.4499 1.3413 -5.3755 20 9 3.6292 1.6035 -4.7708 21 6 2.0735 2.0540 -6.4973 22 6 0.8661 1.7893 -7.1206 23 6 0.0240 0.8116 -6.6286 24 6 0.3834 0.0846 -5.5024 25 7 -0.4659 -0.9011 -5.0057 26 6 -1.3496 -1.5049 -5.8250 27 7 -2.2475 -2.3758 -5.3233 28 8 -1.3365 -1.2639 -7.0166 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7198 1.2951 33 1 3.1262 -0.7994 1.2056 34 1 1.1488 0.8594 2.3518 35 1 0.6956 1.9163 5.4830 36 1 1.6055 -1.7198 -1.2952 37 1 3.1264 -0.7993 -1.2055 38 1 1.1483 0.8591 -2.3518 39 1 2.7245 2.8211 -6.8902 40 1 0.5806 2.3515 -7.9975 41 1 -0.9158 0.6118 -7.1217 42 1 -0.4215 -1.1532 -4.0700 43 1 -2.2581 -2.5678 -4.3726 44 1 -2.8833 -2.8105 -5.9131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715257592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:05 Heat of formation + Delta-G solvation = -74.711755 kcal Electronic energy + Delta-G solvation = -28855.130715 eV Core-core repulsion = 24529.239542 eV Total energy + Delta-G solvation = -4325.891173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.22700 -41.35356 -39.89382 -38.49264 -36.88662 -35.28320 -34.45842 -34.18704 -32.66322 -31.34147 -30.02639 -29.74950 -26.75142 -25.57712 -24.02830 -23.89200 -22.42571 -21.47229 -20.88926 -20.09405 -19.06923 -18.83130 -18.04552 -17.16317 -16.95923 -16.74493 -16.45626 -15.79752 -15.70899 -15.51699 -15.46117 -15.17862 -14.88757 -14.62042 -14.20300 -14.02764 -13.70951 -13.48903 -13.10348 -12.99732 -12.72164 -12.53819 -12.38038 -12.13559 -12.12570 -11.13377 -11.08627 -10.96806 -10.78811 -10.66768 -10.64751 -10.52578 -10.25437 -10.20617 -10.01953 -9.71961 -9.23251 -9.21690 -8.91686 -8.58193 -6.96775 -5.80911 -3.09553 0.54900 0.77579 2.10333 2.26569 2.52526 2.92596 3.22258 3.41321 3.46785 3.48049 3.74779 3.88509 4.31527 4.49951 4.55454 4.63367 4.85463 4.93211 4.95521 5.11412 5.28528 5.38075 5.53552 5.55223 5.64544 5.68629 5.83400 5.88991 5.90664 5.98170 6.01234 6.13408 6.14613 6.27123 6.32480 6.33258 6.47412 6.56929 6.70544 6.78950 7.19998 7.24960 7.66916 7.92539 7.93274 8.38139 9.49577 10.06206 10.40875 11.42046 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002334 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.602032 B =11992.835078 C =12989.127206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.124 3.876 15 N -0.715 5.715 16 C 0.559 3.441 17 O -0.521 6.521 18 C -0.200 4.200 19 C 0.156 3.844 20 F -0.126 7.126 21 C -0.176 4.176 22 C -0.052 4.052 23 C -0.146 4.146 24 C 0.233 3.767 25 N -0.678 5.678 26 C 0.711 3.289 27 N -0.856 5.856 28 O -0.570 6.570 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.403 0.597 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.411 0.589 43 H 0.402 0.598 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -0.726 -25.100 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.097 0.903 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.001 3.999 15 N -0.367 5.367 16 C 0.343 3.657 17 O -0.396 6.396 18 C -0.207 4.207 19 C 0.136 3.864 20 F -0.104 7.104 21 C -0.196 4.196 22 C -0.071 4.071 23 C -0.166 4.166 24 C 0.135 3.865 25 N -0.324 5.324 26 C 0.410 3.590 27 N -0.424 5.424 28 O -0.447 6.447 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.238 0.762 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.177 0.823 42 H 0.248 0.752 43 H 0.231 0.769 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.718 -1.363 -25.941 26.599 hybrid contribution -0.077 -0.012 1.925 1.926 sum -5.795 -1.375 -24.016 24.744 Atomic orbital electron populations 1.21801 0.94673 1.01841 1.01591 1.21567 0.96694 1.00698 0.94084 0.90346 1.20564 0.96688 0.94149 0.85314 1.42333 1.66940 1.27692 1.00570 1.19228 1.28736 1.05484 0.83625 0.91152 1.24732 1.00962 0.97387 0.97878 1.69645 1.43517 1.16580 1.28552 0.86184 0.77626 0.78024 0.84327 1.21691 1.21768 1.20747 1.21520 1.00652 0.95116 0.82644 1.46189 1.57040 1.27867 1.05593 1.17898 0.79913 0.84964 0.82897 1.90850 1.38590 1.23656 1.86551 1.19526 0.95822 1.03369 1.02020 1.17263 0.81702 0.94713 0.92742 1.91568 1.43744 1.92730 1.82399 1.21080 0.99458 1.02796 0.96287 1.21043 0.92157 0.95382 0.98499 1.21481 1.02861 0.95639 0.96664 1.17038 0.86958 0.88217 0.94332 1.42446 1.37197 1.39206 1.13505 1.15819 0.79252 0.79103 0.84823 1.42958 1.37741 1.48203 1.13496 1.90959 1.73798 1.66465 1.13435 0.90986 0.94015 0.92800 0.96000 0.96079 0.78204 0.93496 0.91074 0.90951 0.76186 0.83954 0.84088 0.82253 0.75243 0.76900 0.74546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.94 37.16 0.33 -1.52 16 2 C -0.11 -1.59 2.46 -90.62 -0.22 -1.81 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.05 5.65 -4.04 -0.02 3.03 16 5 N -0.73 -17.78 5.33 -59.91 -0.32 -18.10 16 6 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.39 5.50 -17.44 -0.10 -0.48 16 9 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 10 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.12 1.57 5.06 -4.04 -0.02 1.55 16 15 N -0.72 -7.92 5.28 -61.40 -0.32 -8.24 16 16 C 0.56 7.26 5.80 -12.55 -0.07 7.19 16 17 O -0.52 -8.76 17.11 5.27 0.09 -8.67 16 18 C -0.20 -2.28 5.65 -104.76 -0.59 -2.87 16 19 C 0.16 1.71 7.29 -38.98 -0.28 1.43 16 20 F -0.13 -1.58 16.83 2.25 0.04 -1.54 16 21 C -0.18 -1.46 10.00 -39.55 -0.40 -1.85 16 22 C -0.05 -0.39 10.02 -39.56 -0.40 -0.78 16 23 C -0.15 -1.35 8.70 -39.43 -0.34 -1.70 16 24 C 0.23 2.38 6.44 -83.49 -0.54 1.84 16 25 N -0.68 -5.89 5.17 -14.05 -0.07 -5.96 16 26 C 0.71 6.39 8.63 -86.92 -0.75 5.64 16 27 N -0.86 -4.14 8.88 27.63 0.25 -3.90 16 28 O -0.57 -6.94 14.33 5.29 0.08 -6.86 16 29 H 0.07 1.15 7.18 -51.93 -0.37 0.78 16 30 H 0.04 0.42 7.18 -51.93 -0.37 0.05 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 9.72 6.85 -40.82 -0.28 9.44 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.40 3.71 7.64 -40.82 -0.31 3.40 16 39 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.16 1.55 5.77 -52.49 -0.30 1.25 16 42 H 0.41 2.99 7.91 -40.82 -0.32 2.67 16 43 H 0.40 1.02 8.85 -40.82 -0.36 0.66 16 44 H 0.42 1.49 8.93 -40.82 -0.36 1.12 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -35.66 378.42 -8.03 -43.69 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.62 Total: 10.80 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -3.55 Total: 2.92 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.25 Total: -63.17 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.17 Total: -15.53 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.66 -8.03 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715257592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.020 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds