Wall clock time and date at job start Tue Mar 31 2020 20:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46361 * 2 1 4 4 C 1.52997 * 109.46971 * 119.99928 * 2 1 3 5 5 N 1.46504 * 109.47308 * 295.00400 * 4 2 1 6 6 C 1.36940 * 120.00094 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99496 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31609 * 120.00566 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99355 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47024 * 90.00342 * 10 8 6 12 12 H 1.48503 * 109.46710 * 209.99634 * 10 8 6 13 13 H 1.48497 * 109.47418 * 329.99987 * 10 8 6 14 14 C 1.52997 * 109.46975 * 239.99955 * 2 1 3 15 15 N 1.46507 * 109.47253 * 65.00139 * 14 2 1 16 16 C 1.34768 * 119.99987 * 179.97438 * 15 14 2 17 17 O 1.21607 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.47363 * 120.00043 * 179.97438 * 16 15 14 19 19 C 1.39957 * 120.21798 * 89.72598 * 18 16 15 20 20 F 1.35101 * 120.07322 * 0.25114 * 19 18 16 21 21 C 1.38131 * 119.84463 * 180.30189 * 19 18 16 22 22 C 1.38432 * 120.30897 * 359.95392 * 21 19 18 23 23 C 1.38100 * 120.44840 * 0.04447 * 22 21 19 24 24 C 1.38780 * 120.14262 * 359.97438 * 23 22 21 25 25 N 1.39273 * 120.15161 * 179.97438 * 24 23 22 26 26 C 1.34778 * 120.00406 * 24.84158 * 25 24 23 27 27 N 1.34773 * 120.00111 * 185.62192 * 26 25 24 28 28 O 1.21584 * 119.99590 * 5.62926 * 26 25 24 29 29 H 1.09002 * 109.47446 * 299.99546 * 1 2 3 30 30 H 1.08992 * 109.47406 * 60.00281 * 1 2 3 31 31 H 1.09005 * 109.46759 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47187 * 55.00572 * 4 2 1 33 33 H 1.08994 * 109.47100 * 175.00451 * 4 2 1 34 34 H 0.96996 * 119.99810 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00448 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.47676 * 304.99666 * 14 2 1 37 37 H 1.09007 * 109.46492 * 184.99463 * 14 2 1 38 38 H 0.97001 * 119.99560 * 359.97438 * 15 14 2 39 39 H 1.08003 * 119.84340 * 179.97438 * 21 19 18 40 40 H 1.08001 * 119.77912 * 180.02562 * 22 21 19 41 41 H 1.08001 * 119.92805 * 180.02562 * 23 22 21 42 42 H 0.97003 * 119.99648 * 204.84191 * 25 24 23 43 43 H 0.96996 * 120.00104 * 0.02562 * 27 26 25 44 44 H 0.97003 * 119.99795 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6523 0.0353 2.4424 6 6 2.0018 -0.4203 3.6856 7 1 2.5629 -1.3376 3.7864 8 6 1.6349 0.2969 4.8160 9 7 0.9517 1.4150 4.6931 10 14 2.1111 -0.3251 6.5119 11 1 3.4338 0.2336 6.8907 12 1 1.0905 0.1048 7.5013 13 1 2.1874 -1.8080 6.4919 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0354 -2.4424 16 6 1.9964 -0.4131 -3.6659 17 8 2.6281 -1.4460 -3.7795 18 6 1.6061 0.3477 -4.8661 19 6 2.4499 1.3413 -5.3755 20 9 3.6292 1.6035 -4.7708 21 6 2.0735 2.0540 -6.4973 22 6 0.8661 1.7893 -7.1206 23 6 0.0240 0.8116 -6.6286 24 6 0.3834 0.0846 -5.5024 25 7 -0.4659 -0.9011 -5.0057 26 6 -1.3496 -1.5049 -5.8250 27 7 -2.2475 -2.3758 -5.3233 28 8 -1.3365 -1.2639 -7.0166 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7198 1.2951 33 1 3.1262 -0.7994 1.2056 34 1 1.1488 0.8594 2.3518 35 1 0.6956 1.9163 5.4830 36 1 1.6055 -1.7198 -1.2952 37 1 3.1264 -0.7993 -1.2055 38 1 1.1483 0.8591 -2.3518 39 1 2.7245 2.8211 -6.8902 40 1 0.5806 2.3515 -7.9975 41 1 -0.9158 0.6118 -7.1217 42 1 -0.4215 -1.1532 -4.0700 43 1 -2.2581 -2.5678 -4.3726 44 1 -2.8833 -2.8105 -5.9131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715257592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:04 Heat of formation + Delta-G solvation = -102.925569 kcal Electronic energy + Delta-G solvation = -28856.354158 eV Core-core repulsion = 24529.239542 eV Total energy + Delta-G solvation = -4327.114616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.09102 -42.09424 -40.83470 -39.27816 -38.21398 -36.03131 -35.98716 -34.74585 -34.19576 -32.40997 -31.58045 -30.44607 -27.84743 -27.19890 -25.15950 -24.59913 -23.98717 -22.16153 -21.87142 -21.34092 -19.82855 -19.50700 -19.27766 -18.64378 -17.75781 -17.58196 -17.43716 -16.79147 -16.56361 -16.46455 -16.41354 -16.16560 -15.99487 -15.57427 -15.50309 -15.31745 -15.18261 -14.67414 -14.32158 -14.09321 -13.75293 -13.63941 -13.55321 -13.19505 -12.95518 -12.88678 -12.81409 -12.20497 -12.16966 -12.01499 -11.79235 -11.73502 -11.66859 -11.39394 -11.19822 -10.94340 -10.79672 -10.27548 -9.98397 -9.27582 -8.99189 -7.95613 -5.23626 -0.17801 0.06041 1.22889 1.47881 1.49064 1.50923 1.57394 1.85444 1.96007 2.51751 2.56447 3.08813 3.30212 3.38428 3.47788 3.69059 3.84327 3.90323 3.96280 4.06647 4.21029 4.28604 4.34470 4.52359 4.68220 4.69129 4.76595 4.88809 4.94093 5.03075 5.03782 5.12350 5.20611 5.22708 5.33017 5.37774 5.47996 5.50374 5.60759 5.79601 5.86919 6.26739 6.29886 6.66884 6.94906 7.34307 7.35132 8.09655 8.33424 9.27831 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.002334 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.602032 B =11992.835078 C =12989.127206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.074 0.926 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.971 3.029 11 H -0.289 1.289 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.135 3.865 15 N -0.700 5.700 16 C 0.565 3.435 17 O -0.564 6.564 18 C -0.216 4.216 19 C 0.135 3.865 20 F -0.141 7.141 21 C -0.168 4.168 22 C -0.038 4.038 23 C -0.152 4.152 24 C 0.226 3.774 25 N -0.674 5.674 26 C 0.705 3.295 27 N -0.836 5.836 28 O -0.605 6.605 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.016 0.984 34 H 0.376 0.624 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.157 0.843 42 H 0.417 0.583 43 H 0.416 0.584 44 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 -0.724 -26.361 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.092 0.908 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.800 3.200 11 H -0.216 1.216 12 H -0.221 1.221 13 H -0.195 1.195 14 C 0.011 3.989 15 N -0.352 5.352 16 C 0.350 3.650 17 O -0.443 6.443 18 C -0.223 4.223 19 C 0.115 3.885 20 F -0.120 7.120 21 C -0.187 4.187 22 C -0.056 4.056 23 C -0.172 4.172 24 C 0.127 3.873 25 N -0.321 5.321 26 C 0.404 3.596 27 N -0.405 5.405 28 O -0.484 6.484 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.252 0.748 39 H 0.185 0.815 40 H 0.194 0.806 41 H 0.174 0.826 42 H 0.254 0.746 43 H 0.247 0.753 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.405 -1.387 -27.187 27.966 hybrid contribution 0.117 -0.031 2.233 2.236 sum -6.288 -1.418 -24.954 25.774 Atomic orbital electron populations 1.21737 0.93356 1.02406 1.01781 1.21338 0.97603 0.99891 0.92609 0.90764 1.20720 0.96439 0.94292 0.85548 1.42507 1.66785 1.27850 1.01329 1.19614 1.27770 1.05302 0.85054 0.90860 1.25516 1.01717 0.97906 1.01437 1.69789 1.45087 1.17843 1.29116 0.85179 0.76921 0.77997 0.79897 1.21585 1.22072 1.19522 1.21280 0.99836 0.95378 0.82374 1.46011 1.56487 1.27936 1.04727 1.18125 0.78936 0.84328 0.83572 1.90824 1.40664 1.25641 1.87179 1.19401 0.96777 1.04193 1.01917 1.17603 0.81404 0.95643 0.93896 1.91527 1.44644 1.92933 1.82869 1.21381 0.99881 1.02474 0.94969 1.21444 0.91043 0.94346 0.98788 1.21615 1.03184 0.96057 0.96384 1.17168 0.86830 0.88657 0.94639 1.42406 1.36944 1.38957 1.13753 1.16012 0.79641 0.79499 0.84432 1.42817 1.36524 1.46727 1.14433 1.90931 1.74831 1.67780 1.14887 0.93973 0.90572 0.92068 0.95583 0.96565 0.79084 0.93963 0.90320 0.92255 0.74814 0.81453 0.80598 0.82561 0.74583 0.75334 0.73600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.94 71.98 0.64 -2.71 16 2 C -0.10 -2.64 2.46 -10.79 -0.03 -2.67 16 3 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 4 C 0.16 5.92 5.65 86.38 0.49 6.40 16 5 N -0.74 -36.32 5.33 -343.46 -1.83 -38.15 16 6 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 7 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 9 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 10 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 14 C 0.14 3.30 5.06 86.38 0.44 3.74 16 15 N -0.70 -14.75 5.28 -466.43 -2.46 -17.22 16 16 C 0.56 14.41 5.80 86.65 0.50 14.91 16 17 O -0.56 -19.05 17.11 -4.05 -0.07 -19.12 16 18 C -0.22 -4.75 5.65 -19.95 -0.11 -4.86 16 19 C 0.13 2.82 7.29 22.66 0.17 2.99 16 20 F -0.14 -3.49 16.83 44.97 0.76 -2.74 16 21 C -0.17 -2.37 10.00 22.29 0.22 -2.15 16 22 C -0.04 -0.46 10.02 22.28 0.22 -0.23 16 23 C -0.15 -2.57 8.70 22.37 0.19 -2.37 16 24 C 0.23 4.37 6.44 38.60 0.25 4.62 16 25 N -0.67 -11.00 5.17 -316.63 -1.64 -12.63 16 26 C 0.71 11.89 8.63 179.06 1.55 13.44 16 27 N -0.84 -6.76 8.88 -184.75 -1.64 -8.40 16 28 O -0.60 -14.26 14.33 -3.98 -0.06 -14.32 16 29 H 0.04 1.32 7.18 -2.39 -0.02 1.30 16 30 H 0.08 1.35 7.18 -2.39 -0.02 1.33 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.38 19.37 6.85 -92.71 -0.64 18.73 16 35 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.41 6.95 7.64 -92.71 -0.71 6.24 16 39 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.16 2.83 5.77 -2.91 -0.02 2.81 16 42 H 0.42 5.51 7.91 -92.71 -0.73 4.78 16 43 H 0.42 1.28 8.85 -92.71 -0.82 0.46 16 44 H 0.43 2.34 8.93 -92.71 -0.83 1.51 16 Total: -1.00 -77.95 378.42 -1.40 -79.36 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -2.61 Total: 28.62 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 5.84 Total: 14.74 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -7.29 Total: -134.17 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.13 Total: -33.44 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.76 Total: -2.74 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -77.95 -1.40 -79.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715257592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.570 kcal (2) G-P(sol) polarization free energy of solvation -77.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds