Wall clock time and date at job start Tue Mar 31 2020 20:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.53006 * 109.47452 * 240.00154 * 2 1 3 5 5 N 1.46898 * 109.47138 * 184.99841 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47378 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46770 * 304.99958 * 7 6 5 9 9 O 1.42903 * 109.47204 * 64.99537 * 7 6 5 10 10 C 1.50700 * 109.47590 * 185.00063 * 7 6 5 11 11 C 1.38237 * 119.99585 * 279.72722 * 10 7 6 12 12 C 1.38235 * 119.99596 * 179.78326 * 11 10 7 13 13 C 1.38232 * 119.99919 * 0.44130 * 12 11 10 14 14 C 1.38235 * 120.00539 * 359.81323 * 13 12 11 15 15 C 1.38231 * 119.99947 * 99.99589 * 10 7 6 16 16 N 1.46495 * 109.47359 * 120.00061 * 2 1 3 17 17 C 1.34774 * 120.00080 * 275.00294 * 16 2 1 18 18 O 1.21287 * 120.00094 * 359.97438 * 17 16 2 19 19 C 1.50707 * 120.00316 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.47183 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99847 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00250 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00079 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99966 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00159 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47399 * 89.99830 * 25 23 21 27 27 H 1.48497 * 109.47026 * 210.00207 * 25 23 21 28 28 H 1.48498 * 109.46961 * 329.99817 * 25 23 21 29 29 H 1.08990 * 109.47506 * 299.99674 * 1 2 3 30 30 H 1.09002 * 109.47542 * 60.00366 * 1 2 3 31 31 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46770 * 64.99788 * 4 2 1 33 33 H 1.08995 * 109.47019 * 305.00001 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96698 * 113.99918 * 60.00580 * 9 7 6 38 38 H 1.07996 * 119.99779 * 359.97438 * 11 10 7 39 39 H 1.08002 * 119.99855 * 180.27517 * 12 11 10 40 40 H 1.08005 * 119.99795 * 179.83287 * 13 12 11 41 41 H 1.07999 * 120.00670 * 179.97438 * 14 13 12 42 42 H 1.08002 * 120.00393 * 359.97438 * 15 10 7 43 43 H 0.97006 * 120.00437 * 95.00195 * 16 2 1 44 44 H 1.09000 * 109.47031 * 300.00164 * 19 17 16 45 45 H 1.08997 * 109.46789 * 59.99754 * 19 17 16 46 46 H 0.96998 * 119.99891 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.0305 -1.5147 -2.3768 7 6 5.5546 -1.6056 -2.2793 8 1 5.9696 -0.6080 -2.1356 9 8 5.9125 -2.4344 -1.1716 10 6 6.1047 -2.2003 -3.5501 11 6 6.0752 -3.5690 -3.7419 12 6 6.5758 -4.1141 -4.9095 13 6 7.1141 -3.2913 -5.8811 14 6 7.1484 -1.9231 -5.6870 15 6 6.6439 -1.3776 -4.5213 16 7 2.0183 -0.6906 1.1961 17 6 2.1470 -0.0183 2.3571 18 8 1.8589 1.1586 2.4115 19 6 2.6489 -0.7288 3.5877 20 16 2.7105 0.4344 4.9730 21 6 3.3122 -0.6312 6.2407 22 1 3.5210 -1.6678 6.0209 23 6 3.5179 -0.1384 7.5219 24 7 3.2630 1.1249 7.7900 25 14 4.1565 -1.2680 8.8657 26 1 5.6409 -1.2296 8.8808 27 1 3.6362 -0.8158 10.1810 28 1 3.6999 -2.6565 8.6036 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 -2.1369 33 1 1.6055 -1.7197 -1.2952 34 1 3.7996 -1.2883 -0.3433 35 1 3.6097 -2.5188 -2.4310 36 1 3.7559 -0.9569 -3.2721 37 1 5.5761 -3.3390 -1.2323 38 1 5.6583 -4.2120 -2.9810 39 1 6.5487 -5.1830 -5.0614 40 1 7.5076 -3.7175 -6.7922 41 1 7.5694 -1.2803 -6.4459 42 1 6.6705 -0.3086 -4.3696 43 1 2.2491 -1.6318 1.1526 44 1 1.9760 -1.5507 3.8325 45 1 3.6480 -1.1213 3.3985 46 1 3.4071 1.4693 8.6852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715920128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:44 Heat of formation + Delta-G solvation = -68.197367 kcal Electronic energy + Delta-G solvation = -25727.869648 eV Core-core repulsion = 21936.181384 eV Total energy + Delta-G solvation = -3791.688263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14449 -39.41022 -37.80636 -36.46693 -34.11501 -32.39290 -32.13671 -31.33086 -31.28263 -28.57728 -28.24729 -25.45858 -25.20824 -23.21076 -22.85059 -21.70752 -21.20614 -20.24833 -18.05534 -17.86882 -16.86660 -16.51853 -16.24795 -16.16441 -15.69012 -15.17219 -15.10840 -14.77375 -14.64875 -14.39777 -14.19939 -13.93227 -13.78850 -13.34919 -13.22899 -13.13755 -12.74301 -12.61583 -12.41658 -12.29976 -12.12563 -11.93908 -11.63892 -11.59207 -11.35786 -11.06842 -11.02491 -10.98833 -10.72945 -10.43987 -9.77799 -9.36678 -9.32197 -9.19279 -9.03584 -8.87590 -8.72254 -8.18973 -6.45366 -6.18156 -3.88089 0.86728 0.95732 3.07263 3.16559 3.24971 3.27979 3.30569 3.34733 3.66052 3.79223 4.06711 4.23878 4.38390 4.39782 4.52437 4.62818 4.66388 4.70279 4.81042 4.98354 5.05053 5.10197 5.16697 5.17425 5.22825 5.32220 5.39111 5.42281 5.45501 5.53041 5.61193 5.63730 5.70751 5.94050 6.00224 6.07499 6.08398 6.14277 6.16813 6.19447 6.53726 6.63305 6.72182 7.08313 7.22008 7.62984 7.74395 8.38718 8.68435 9.27144 10.89242 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.002062 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.785388 B =13572.942591 C =15095.452728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.096 0.904 4 C 0.054 3.946 5 N -0.684 5.684 6 C 0.035 3.965 7 C 0.147 3.853 8 H 0.118 0.882 9 O -0.548 6.548 10 C -0.114 4.114 11 C -0.112 4.112 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.107 4.107 16 N -0.734 5.734 17 C 0.536 3.464 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.033 0.967 34 H 0.352 0.648 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.370 0.630 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.392 0.608 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -11.207 -29.443 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.114 0.886 4 C -0.076 4.076 5 N -0.317 5.317 6 C -0.095 4.095 7 C 0.087 3.913 8 H 0.136 0.864 9 O -0.353 6.353 10 C -0.115 4.115 11 C -0.131 4.131 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.136 4.136 15 C -0.125 4.125 16 N -0.389 5.389 17 C 0.322 3.678 18 O -0.389 6.389 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.172 0.828 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.217 0.783 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.226 0.774 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.513 -7.901 -29.267 30.419 hybrid contribution 0.317 -4.037 0.615 4.096 sum 2.831 -11.938 -28.651 31.168 Atomic orbital electron populations 1.22164 0.95207 1.01938 1.02891 1.20921 0.93562 0.98421 0.83146 0.88562 1.22281 0.87588 0.99156 0.98546 1.60299 1.09606 1.56769 1.05047 1.22622 0.94643 0.97180 0.95008 1.20928 0.92826 0.95024 0.82474 0.86394 1.86734 1.78837 1.25800 1.43952 1.20546 0.99755 0.94217 0.96955 1.20884 1.00142 0.94395 0.97630 1.21132 0.98629 0.99910 0.93917 1.21204 0.99591 0.93854 0.99256 1.21190 0.99594 0.95309 0.97513 1.21064 0.97899 0.99951 0.93595 1.46037 1.69548 1.13515 1.09752 1.20253 0.76691 0.87189 0.83674 1.90698 1.48187 1.15702 1.84358 1.23536 1.03659 1.04792 0.98462 1.85391 1.86291 1.12882 0.98712 1.22870 1.50930 0.98129 0.96356 0.90973 1.24993 0.95140 0.95545 0.97956 1.70022 1.45556 1.13215 1.21506 0.86172 0.79027 0.80176 0.80144 1.20265 1.20794 1.19743 0.91320 0.91845 0.92754 0.89704 0.94875 0.82791 0.94943 0.89923 0.78290 0.86308 0.85950 0.86033 0.85846 0.85624 0.77446 0.89426 0.89198 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.48 37.15 0.35 -1.40 16 2 C 0.14 1.68 2.88 -67.93 -0.20 1.48 16 3 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 4 C 0.05 0.46 5.30 -3.82 -0.02 0.44 16 5 N -0.68 -6.40 6.49 -113.78 -0.74 -7.14 16 6 C 0.04 0.26 5.34 -3.82 -0.02 0.24 16 7 C 0.15 1.19 3.45 -27.89 -0.10 1.09 16 8 H 0.12 1.10 8.00 -51.93 -0.42 0.68 16 9 O -0.55 -4.98 12.71 -35.23 -0.45 -5.43 16 10 C -0.11 -0.87 4.97 -104.63 -0.52 -1.39 16 11 C -0.11 -0.77 9.32 -39.58 -0.37 -1.13 16 12 C -0.12 -0.76 10.05 -39.58 -0.40 -1.15 16 13 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 14 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 15 C -0.11 -0.78 9.67 -39.58 -0.38 -1.17 16 16 N -0.73 -9.63 4.36 -53.81 -0.23 -9.87 16 17 C 0.54 10.00 7.81 -10.98 -0.09 9.92 16 18 O -0.52 -11.77 15.52 5.55 0.09 -11.69 16 19 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 25 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.35 3.56 7.14 -39.29 -0.28 3.28 16 35 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.37 2.08 7.50 45.56 0.34 2.42 16 38 H 0.12 0.58 6.78 -52.49 -0.36 0.23 16 39 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 41 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.77 8.04 -52.49 -0.42 0.35 16 43 H 0.39 4.05 8.15 -40.82 -0.33 3.72 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -35.85 400.01 -10.40 -46.25 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.48 Total: 6.15 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.11 Total: -11.39 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.24 Total: -42.69 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.36 Total: -17.11 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.85 -10.40 -46.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715920128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.949 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds