Wall clock time and date at job start Tue Mar 31 2020 20:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.53006 * 109.47452 * 240.00154 * 2 1 3 5 5 N 1.46898 * 109.47138 * 184.99841 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47378 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.46770 * 304.99958 * 7 6 5 9 9 O 1.42903 * 109.47204 * 64.99537 * 7 6 5 10 10 C 1.50700 * 109.47590 * 185.00063 * 7 6 5 11 11 C 1.38237 * 119.99585 * 279.72722 * 10 7 6 12 12 C 1.38235 * 119.99596 * 179.78326 * 11 10 7 13 13 C 1.38232 * 119.99919 * 0.44130 * 12 11 10 14 14 C 1.38235 * 120.00539 * 359.81323 * 13 12 11 15 15 C 1.38231 * 119.99947 * 99.99589 * 10 7 6 16 16 N 1.46495 * 109.47359 * 120.00061 * 2 1 3 17 17 C 1.34774 * 120.00080 * 275.00294 * 16 2 1 18 18 O 1.21287 * 120.00094 * 359.97438 * 17 16 2 19 19 C 1.50707 * 120.00316 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.47183 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99847 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00250 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00079 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99966 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00159 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47399 * 89.99830 * 25 23 21 27 27 H 1.48497 * 109.47026 * 210.00207 * 25 23 21 28 28 H 1.48498 * 109.46961 * 329.99817 * 25 23 21 29 29 H 1.08990 * 109.47506 * 299.99674 * 1 2 3 30 30 H 1.09002 * 109.47542 * 60.00366 * 1 2 3 31 31 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46770 * 64.99788 * 4 2 1 33 33 H 1.08995 * 109.47019 * 305.00001 * 4 2 1 34 34 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96698 * 113.99918 * 60.00580 * 9 7 6 38 38 H 1.07996 * 119.99779 * 359.97438 * 11 10 7 39 39 H 1.08002 * 119.99855 * 180.27517 * 12 11 10 40 40 H 1.08005 * 119.99795 * 179.83287 * 13 12 11 41 41 H 1.07999 * 120.00670 * 179.97438 * 14 13 12 42 42 H 1.08002 * 120.00393 * 359.97438 * 15 10 7 43 43 H 0.97006 * 120.00437 * 95.00195 * 16 2 1 44 44 H 1.09000 * 109.47031 * 300.00164 * 19 17 16 45 45 H 1.08997 * 109.46789 * 59.99754 * 19 17 16 46 46 H 0.96998 * 119.99891 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.0305 -1.5147 -2.3768 7 6 5.5546 -1.6056 -2.2793 8 1 5.9696 -0.6080 -2.1356 9 8 5.9125 -2.4344 -1.1716 10 6 6.1047 -2.2003 -3.5501 11 6 6.0752 -3.5690 -3.7419 12 6 6.5758 -4.1141 -4.9095 13 6 7.1141 -3.2913 -5.8811 14 6 7.1484 -1.9231 -5.6870 15 6 6.6439 -1.3776 -4.5213 16 7 2.0183 -0.6906 1.1961 17 6 2.1470 -0.0183 2.3571 18 8 1.8589 1.1586 2.4115 19 6 2.6489 -0.7288 3.5877 20 16 2.7105 0.4344 4.9730 21 6 3.3122 -0.6312 6.2407 22 1 3.5210 -1.6678 6.0209 23 6 3.5179 -0.1384 7.5219 24 7 3.2630 1.1249 7.7900 25 14 4.1565 -1.2680 8.8657 26 1 5.6409 -1.2296 8.8808 27 1 3.6362 -0.8158 10.1810 28 1 3.6999 -2.6565 8.6036 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1583 -2.1369 33 1 1.6055 -1.7197 -1.2952 34 1 3.7996 -1.2883 -0.3433 35 1 3.6097 -2.5188 -2.4310 36 1 3.7559 -0.9569 -3.2721 37 1 5.5761 -3.3390 -1.2323 38 1 5.6583 -4.2120 -2.9810 39 1 6.5487 -5.1830 -5.0614 40 1 7.5076 -3.7175 -6.7922 41 1 7.5694 -1.2803 -6.4459 42 1 6.6705 -0.3086 -4.3696 43 1 2.2491 -1.6318 1.1526 44 1 1.9760 -1.5507 3.8325 45 1 3.6480 -1.1213 3.3985 46 1 3.4071 1.4693 8.6852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715920128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:43 Heat of formation + Delta-G solvation = -95.269659 kcal Electronic energy + Delta-G solvation = -25729.043590 eV Core-core repulsion = 21936.181384 eV Total energy + Delta-G solvation = -3792.862206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85535 -40.56313 -38.51205 -37.40864 -35.06657 -34.57129 -32.90376 -32.33764 -31.76144 -30.00686 -28.92405 -27.64698 -25.92796 -23.76141 -23.37662 -22.70748 -21.88250 -21.49926 -19.85573 -18.58601 -18.05838 -17.49374 -17.10498 -16.88895 -16.86393 -16.51831 -16.34224 -15.98801 -15.66046 -15.49846 -15.05444 -14.77998 -14.68909 -14.48794 -14.25186 -14.10783 -13.92842 -13.61732 -13.30224 -13.19077 -13.15020 -12.90314 -12.88405 -12.73765 -12.65331 -12.54008 -12.10722 -11.97592 -11.85317 -11.70684 -11.13355 -11.06033 -10.88622 -10.25691 -10.10664 -9.84510 -9.68704 -9.38866 -8.64889 -8.33493 -6.11217 0.37611 0.47913 1.28292 1.43031 1.48099 1.58539 1.66858 2.27015 2.32316 2.77708 3.00403 3.04535 3.34217 3.52154 3.77248 3.84776 3.92263 4.01623 4.05050 4.16140 4.20089 4.24393 4.28172 4.30802 4.39472 4.52298 4.57796 4.62004 4.64760 4.71770 4.73438 4.78719 4.92694 5.05439 5.09304 5.14545 5.27507 5.42766 5.53810 5.55866 5.61120 5.63801 5.99771 6.08164 6.20892 6.35680 6.52846 6.74644 7.07633 7.29868 8.75705 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013268 B = 0.002062 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.785388 B =13572.942591 C =15095.452728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.064 0.936 4 C 0.065 3.935 5 N -0.702 5.702 6 C 0.044 3.956 7 C 0.152 3.848 8 H 0.098 0.902 9 O -0.567 6.567 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.126 4.126 13 C -0.129 4.129 14 C -0.128 4.128 15 C -0.124 4.124 16 N -0.707 5.707 17 C 0.537 3.463 18 O -0.565 6.565 19 C -0.129 4.129 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.346 0.654 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.384 0.616 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.411 0.589 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -14.421 -31.039 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.064 4.064 5 N -0.335 5.335 6 C -0.085 4.085 7 C 0.093 3.907 8 H 0.116 0.884 9 O -0.375 6.375 10 C -0.125 4.125 11 C -0.138 4.138 12 C -0.144 4.144 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.142 4.142 16 N -0.361 5.361 17 C 0.323 3.677 18 O -0.443 6.443 19 C -0.281 4.281 20 S 0.075 5.925 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.203 1.203 28 H -0.181 1.181 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.233 0.767 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.247 0.753 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.662 -11.171 -30.923 32.986 hybrid contribution 0.272 -3.065 0.947 3.219 sum 2.933 -14.235 -29.976 33.314 Atomic orbital electron populations 1.22105 0.94136 1.03031 1.02348 1.21052 0.94361 0.97172 0.83526 0.91755 1.22204 0.87235 1.00091 0.96901 1.60285 1.10140 1.57592 1.05498 1.22557 0.93982 0.97879 0.94119 1.20779 0.93272 0.94092 0.82558 0.88432 1.86692 1.79308 1.26981 1.44502 1.20548 1.00460 0.94789 0.96736 1.21138 1.00136 0.94239 0.98322 1.21444 0.98224 1.01010 0.93732 1.21522 0.99263 0.93821 1.00035 1.21443 0.99530 0.95953 0.97640 1.21254 0.98452 1.00352 0.94155 1.45766 1.67590 1.14181 1.08522 1.19996 0.76540 0.86522 0.84611 1.90688 1.50700 1.17772 1.85167 1.23374 1.05403 1.03146 0.96147 1.85582 1.86701 1.17383 1.02787 1.23204 1.50892 0.98431 0.96793 0.89943 1.26146 0.95116 0.97247 1.00790 1.70191 1.46837 1.15497 1.22265 0.84945 0.78476 0.78206 0.76295 1.19363 1.20290 1.18134 0.94748 0.89565 0.90751 0.88328 0.92473 0.83417 0.93223 0.89651 0.76659 0.84601 0.84113 0.84205 0.84403 0.85381 0.75274 0.87326 0.87425 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.48 71.98 0.68 -2.44 16 2 C 0.14 3.15 2.88 44.99 0.13 3.28 16 3 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 4 C 0.06 0.94 5.30 86.31 0.46 1.39 16 5 N -0.70 -11.87 6.49 -513.88 -3.34 -15.21 16 6 C 0.04 0.56 5.34 86.30 0.46 1.02 16 7 C 0.15 2.34 3.45 29.85 0.10 2.44 16 8 H 0.10 1.86 8.00 -2.38 -0.02 1.84 16 9 O -0.57 -9.65 12.71 -148.98 -1.89 -11.54 16 10 C -0.12 -1.77 4.97 -19.87 -0.10 -1.86 16 11 C -0.12 -1.42 9.32 22.27 0.21 -1.21 16 12 C -0.13 -1.36 10.05 22.27 0.22 -1.14 16 13 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 14 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 15 C -0.12 -1.75 9.67 22.27 0.22 -1.54 16 16 N -0.71 -17.57 4.36 -442.53 -1.93 -19.50 16 17 C 0.54 20.10 7.81 87.66 0.68 20.78 16 18 O -0.57 -26.79 15.52 -3.05 -0.05 -26.84 16 19 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 20 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 21 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.67 5.49 84.86 0.47 1.14 16 24 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 25 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.35 6.37 7.14 -89.69 -0.64 5.73 16 35 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.38 3.60 7.50 -74.06 -0.56 3.04 16 38 H 0.14 1.00 6.78 -2.91 -0.02 0.98 16 39 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.13 1.60 8.04 -2.91 -0.02 1.58 16 43 H 0.41 7.36 8.15 -92.70 -0.76 6.60 16 44 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 45 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 46 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -81.12 400.01 -1.94 -83.06 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.95 Total: 26.39 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.06 Total: -16.33 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -4.98 Total: -91.17 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.94 Total: -38.38 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -81.12 -1.94 -83.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715920128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.213 kcal (2) G-P(sol) polarization free energy of solvation -81.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds