Wall clock time and date at job start Tue Mar 31 2020 20:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 C 1.38229 * 119.99638 * 269.72749 * 7 6 5 9 9 C 1.38242 * 119.99592 * 179.76315 * 8 7 6 10 10 C 1.38231 * 119.99995 * 0.48771 * 9 8 7 11 11 C 1.50701 * 120.00391 * 179.76749 * 10 9 8 12 12 O 1.42904 * 109.46863 * 270.02358 * 11 10 9 13 13 C 1.38244 * 120.00064 * 359.78618 * 10 9 8 14 14 C 1.38232 * 119.99604 * 359.95701 * 13 10 9 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.00901 * 111.00043 * 56.04169 * 5 4 2 34 34 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 35 35 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 36 36 H 1.07998 * 120.00490 * 359.97438 * 8 7 6 37 37 H 1.08002 * 120.00135 * 180.24937 * 9 8 7 38 38 H 1.09010 * 109.46717 * 30.01829 * 11 10 9 39 39 H 1.08991 * 109.47368 * 150.01736 * 11 10 9 40 40 H 0.96698 * 113.99732 * 179.97438 * 12 11 10 41 41 H 1.07993 * 119.99682 * 179.97438 * 13 10 9 42 42 H 1.07997 * 119.99833 * 179.97438 * 14 13 10 43 43 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 44 44 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 45 45 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 46 46 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5316 -1.6051 -2.2805 8 6 6.3190 -0.5988 -2.8079 9 6 7.6961 -0.6786 -2.7155 10 6 8.2858 -1.7695 -2.1048 11 6 9.7870 -1.8591 -2.0088 12 8 10.2990 -2.5294 -3.1624 13 6 7.4983 -2.7786 -1.5825 14 6 6.1213 -2.6962 -1.6701 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.4563 -1.8141 8.4830 26 1 4.2562 -0.5140 10.1409 27 1 3.1758 -2.3994 9.0638 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 3.7996 -1.2882 -0.3436 34 1 3.6094 -2.5196 -2.4299 35 1 3.7557 -0.9584 -3.2721 36 1 5.8585 0.2513 -3.2889 37 1 8.3113 0.1095 -3.1239 38 1 10.2082 -0.8551 -1.9551 39 1 10.0612 -2.4164 -1.1132 40 1 11.2614 -2.6227 -3.1682 41 1 7.9591 -3.6311 -1.1058 42 1 5.5061 -3.4847 -1.2625 43 1 2.2492 -1.6319 1.1524 44 1 1.9698 -1.5528 3.8298 45 1 3.6437 -1.1227 3.4038 46 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716387316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:48 Heat of formation + Delta-G solvation = -96.577638 kcal Electronic energy + Delta-G solvation = -25577.718810 eV Core-core repulsion = 21784.799886 eV Total energy + Delta-G solvation = -3792.918924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83003 -40.45064 -38.18862 -37.46200 -35.55180 -34.57790 -33.15953 -32.11732 -31.85827 -29.97860 -28.48069 -27.65014 -26.01941 -24.08281 -23.66747 -22.66454 -21.60638 -21.49731 -19.85902 -18.37960 -18.07937 -17.58449 -17.11799 -16.87305 -16.86843 -16.45106 -16.32166 -16.02462 -15.82707 -15.67732 -14.90916 -14.75110 -14.58128 -14.49477 -14.29740 -14.10775 -13.99197 -13.63136 -13.35112 -13.20615 -13.15929 -12.92819 -12.86473 -12.72929 -12.66160 -12.56204 -12.05413 -11.89742 -11.75430 -11.68018 -11.12393 -11.00704 -10.88908 -10.26518 -10.10686 -9.84073 -9.71069 -9.32360 -8.65653 -8.33811 -6.11800 0.27699 0.49274 1.27717 1.43971 1.47437 1.57285 1.66716 2.26910 2.32275 2.65752 3.00037 3.27151 3.35094 3.57540 3.81338 3.88563 3.88874 4.04219 4.07948 4.18116 4.19997 4.23661 4.29537 4.39044 4.50095 4.51144 4.54579 4.57431 4.64913 4.71299 4.75249 4.79930 4.80959 5.07907 5.10491 5.15364 5.28759 5.41818 5.43705 5.56510 5.63942 5.66057 5.99321 6.09191 6.20086 6.34672 6.53053 6.87118 7.07148 7.29970 8.75179 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.002517 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.673596 B =11123.580227 C =13833.456814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.064 0.936 4 C 0.064 3.936 5 N -0.699 5.699 6 C 0.104 3.896 7 C -0.086 4.086 8 C -0.112 4.112 9 C -0.115 4.115 10 C -0.112 4.112 11 C 0.116 3.884 12 O -0.589 6.589 13 C -0.114 4.114 14 C -0.123 4.123 15 N -0.707 5.707 16 C 0.537 3.463 17 O -0.565 6.565 18 C -0.129 4.129 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.262 1.262 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.342 0.658 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.399 0.601 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.411 0.589 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -11.825 -25.820 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.065 4.065 5 N -0.331 5.331 6 C -0.024 4.024 7 C -0.087 4.087 8 C -0.131 4.131 9 C -0.133 4.133 10 C -0.113 4.113 11 C 0.039 3.961 12 O -0.398 6.398 13 C -0.132 4.132 14 C -0.142 4.142 15 N -0.361 5.361 16 C 0.323 3.677 17 O -0.443 6.443 18 C -0.280 4.280 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.160 0.840 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.249 0.751 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.247 0.753 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.694 -9.132 -26.057 28.192 hybrid contribution 1.132 -2.624 1.395 3.180 sum 6.826 -11.756 -24.663 28.161 Atomic orbital electron populations 1.22107 0.94164 1.03031 1.02328 1.21056 0.94326 0.97164 0.83512 0.91762 1.22229 0.87018 1.00263 0.96972 1.60409 1.10231 1.57438 1.05014 1.20882 0.89420 0.97947 0.94164 1.20009 0.95999 0.94529 0.98155 1.21237 0.93474 0.98638 0.99745 1.21281 0.95315 0.98217 0.98490 1.19970 0.95636 0.95593 1.00056 1.21028 0.89503 0.97241 0.88372 1.86499 1.28594 1.80748 1.43941 1.21268 0.94057 0.98385 0.99485 1.21286 0.94956 0.98528 0.99417 1.45781 1.67594 1.14177 1.08573 1.19992 0.76563 0.86530 0.84614 1.90690 1.50607 1.17818 1.85180 1.23372 1.05412 1.03134 0.96130 1.85595 1.86919 1.17403 1.02566 1.23168 1.51109 0.98435 0.96688 0.89944 1.26140 0.95072 0.97223 1.00795 1.70183 1.46867 1.15535 1.22232 0.85005 0.79105 0.77737 0.76162 1.18633 1.20426 1.18623 0.94824 0.89531 0.90746 0.92267 0.88043 0.83970 0.92709 0.89268 0.84985 0.85061 0.91625 0.91598 0.75054 0.84946 0.84484 0.75267 0.87347 0.87434 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.48 71.98 0.68 -2.39 16 2 C 0.14 3.09 2.88 44.99 0.13 3.22 16 3 H 0.06 1.84 7.58 -2.38 -0.02 1.82 16 4 C 0.06 0.89 5.30 86.31 0.46 1.35 16 5 N -0.70 -11.64 6.48 -517.93 -3.36 -14.99 16 6 C 0.10 1.42 5.81 85.56 0.50 1.92 16 7 C -0.09 -1.51 5.39 -19.87 -0.11 -1.62 16 8 C -0.11 -2.11 9.70 22.27 0.22 -1.89 16 9 C -0.12 -2.20 9.70 22.27 0.22 -1.98 16 10 C -0.11 -2.15 5.51 -19.86 -0.11 -2.26 16 11 C 0.12 1.68 7.17 71.24 0.51 2.20 16 12 O -0.59 -8.92 13.64 -148.98 -2.03 -10.95 16 13 C -0.11 -2.10 9.70 22.27 0.22 -1.88 16 14 C -0.12 -2.13 9.70 22.27 0.22 -1.91 16 15 N -0.71 -17.19 4.36 -442.52 -1.93 -19.11 16 16 C 0.54 19.78 7.81 87.66 0.68 20.47 16 17 O -0.56 -26.51 15.53 -3.04 -0.05 -26.55 16 18 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 19 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 20 C -0.55 -31.32 9.50 67.95 0.65 -30.68 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.71 5.49 84.86 0.47 1.17 16 23 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 24 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.34 6.03 7.57 -89.69 -0.68 5.35 16 34 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 35 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 36 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.07 0.79 8.09 -2.38 -0.02 0.77 16 39 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 40 H 0.40 2.03 9.12 -74.06 -0.68 1.35 16 41 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 42 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.41 7.09 8.15 -92.71 -0.76 6.34 16 44 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 45 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -82.19 404.09 -2.16 -84.35 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -1.11 Total: 26.38 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.16 Total: -18.98 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -5.00 Total: -90.25 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -2.08 Total: -37.51 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -82.19 -2.16 -84.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716387316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.229 kcal (2) G-P(sol) polarization free energy of solvation -82.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds