Wall clock time and date at job start Tue Mar 31 2020 20:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47056 * 2 1 4 4 C 1.53001 * 109.47210 * 119.99744 * 2 1 3 5 5 N 1.46902 * 109.47141 * 175.00342 * 4 2 1 6 6 C 1.46903 * 110.99948 * 66.04799 * 5 4 2 7 7 C 1.46896 * 110.99831 * 189.99998 * 5 4 2 8 8 C 1.50702 * 109.46879 * 169.99874 * 7 5 4 9 9 O 1.21287 * 120.00404 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99781 * 180.02562 * 8 7 5 11 11 C 1.37103 * 119.99681 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00247 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99880 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99812 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00098 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47152 * 59.99796 * 15 13 11 17 17 H 1.48499 * 109.47068 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47103 * 300.00089 * 15 13 11 19 19 N 1.46498 * 109.47616 * 240.00162 * 2 1 3 20 20 C 1.34778 * 120.00295 * 84.99142 * 19 2 1 21 21 O 1.21554 * 119.99530 * 0.02562 * 20 19 2 22 22 C 1.47843 * 120.00143 * 180.02562 * 20 19 2 23 23 C 1.39557 * 120.54533 * 0.02562 * 22 20 19 24 24 N 1.31654 * 120.61855 * 179.74399 * 23 22 20 25 25 C 1.31943 * 121.90952 * 0.25968 * 24 23 22 26 26 C 1.38533 * 121.04467 * 359.97438 * 25 24 23 27 27 F 1.35093 * 120.37353 * 180.02562 * 26 25 24 28 28 C 1.38610 * 119.25020 * 0.02562 * 26 25 24 29 29 H 1.09003 * 109.47045 * 300.00204 * 1 2 3 30 30 H 1.09002 * 109.47071 * 60.00234 * 1 2 3 31 31 H 1.09001 * 109.46635 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47323 * 295.00478 * 4 2 1 33 33 H 1.08998 * 109.46953 * 55.00090 * 4 2 1 34 34 H 1.08998 * 109.46999 * 60.00053 * 6 5 4 35 35 H 1.09005 * 109.46751 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.46977 * 299.99563 * 6 5 4 37 37 H 1.08995 * 109.47291 * 289.99827 * 7 5 4 38 38 H 1.08999 * 109.47234 * 50.00298 * 7 5 4 39 39 H 0.96996 * 120.00250 * 0.02562 * 10 8 7 40 40 H 0.97006 * 119.99534 * 179.97438 * 14 13 11 41 41 H 0.97001 * 119.99984 * 264.99937 * 19 2 1 42 42 H 1.08002 * 119.69335 * 0.03112 * 23 22 20 43 43 H 1.08004 * 119.47290 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.86735 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5041 -0.8265 1.1905 6 6 4.1310 0.4995 1.2721 7 6 4.0107 -1.7142 2.2455 8 6 5.4725 -1.9935 2.0079 9 8 6.0367 -1.5011 1.0538 10 7 6.1527 -2.7904 2.8557 11 6 7.4824 -3.0449 2.6392 12 1 7.9848 -2.6065 1.7896 13 6 8.1837 -3.8669 3.5128 14 7 7.5725 -4.4000 4.5468 15 14 9.9955 -4.2132 3.2183 16 1 10.7535 -2.9363 3.2407 17 1 10.5076 -5.1110 4.2845 18 1 10.1660 -4.8668 1.8959 19 7 2.0184 -0.6905 -1.1961 20 6 2.1471 -0.0182 -2.3572 21 8 1.8582 1.1612 -2.4116 22 6 2.6395 -0.7153 -3.5644 23 6 2.9738 -2.0693 -3.5148 24 7 3.4077 -2.6927 -4.5902 25 6 3.5489 -2.0728 -5.7464 26 6 3.2432 -0.7281 -5.8780 27 9 3.3924 -0.1070 -7.0684 28 6 2.7825 -0.0270 -4.7746 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 3.8523 0.9759 2.2120 35 1 5.2148 0.3924 1.2258 36 1 3.7911 1.1140 0.4384 37 1 3.8857 -1.2336 3.2158 38 1 3.4546 -2.6515 2.2300 39 1 5.7015 -3.1845 3.6185 40 1 8.0620 -4.9742 5.1565 41 1 2.2492 -1.6317 -1.1526 42 1 2.8714 -2.6120 -2.5867 43 1 3.9085 -2.6226 -6.6036 44 1 2.5361 1.0220 -4.8479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716475673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:27 Heat of formation + Delta-G solvation = -68.852724 kcal Electronic energy + Delta-G solvation = -28883.603359 eV Core-core repulsion = 24557.966252 eV Total energy + Delta-G solvation = -4325.637107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.31516 -40.85029 -39.44152 -38.58511 -37.04293 -34.86349 -33.81884 -32.95197 -32.01947 -31.26817 -30.40830 -28.04838 -26.98076 -25.33795 -24.77136 -23.95076 -22.76455 -21.30922 -20.51753 -19.18883 -18.61301 -17.86550 -17.70046 -17.26533 -16.52359 -16.23836 -16.16083 -16.03391 -15.42022 -14.96972 -14.77697 -14.67929 -14.23026 -14.15318 -14.05479 -13.68847 -13.59180 -13.51561 -13.41313 -12.95608 -12.67990 -12.61551 -12.17525 -12.08763 -11.89387 -11.53775 -11.41026 -11.27419 -10.94021 -10.80333 -10.59034 -10.45781 -10.26978 -10.23561 -9.79570 -9.49056 -9.41632 -9.15331 -8.50678 -8.01792 -7.92216 -6.44115 -3.84937 0.18619 0.64641 2.58536 2.87457 3.18512 3.24530 3.28766 3.43352 3.63356 3.85986 3.88992 3.96586 4.21043 4.34164 4.38190 4.43878 4.65454 4.77312 4.96809 5.05446 5.12194 5.20173 5.22930 5.35954 5.39058 5.45374 5.50655 5.55929 5.65726 5.68833 5.83881 5.89923 5.94106 6.00235 6.13143 6.24121 6.34644 6.53460 7.17193 7.28143 7.34081 7.38676 7.52891 8.02611 8.03700 8.59158 9.15870 9.51803 10.03546 10.73501 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.002823 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.655754 B = 9917.176231 C =11907.907494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.091 0.909 4 C 0.041 3.959 5 N -0.516 5.516 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.443 3.557 9 O -0.577 6.577 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.695 5.695 20 C 0.567 3.433 21 O -0.539 6.539 22 C -0.153 4.153 23 C 0.132 3.868 24 N -0.456 5.456 25 C 0.097 3.903 26 C 0.040 3.960 27 F -0.127 7.127 28 C -0.053 4.053 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.015 0.985 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.405 0.595 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 4.974 -11.732 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.088 4.088 5 N -0.240 5.240 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.228 3.772 9 O -0.461 6.461 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.178 4.178 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.198 1.198 19 N -0.346 5.346 20 C 0.353 3.647 21 O -0.417 6.417 22 C -0.159 4.159 23 C -0.026 4.026 24 N -0.163 5.163 25 C -0.062 4.062 26 C 0.018 3.982 27 F -0.105 7.105 28 C -0.080 4.080 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.242 0.758 42 H 0.187 0.813 43 H 0.190 0.810 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.892 4.942 -12.652 20.156 hybrid contribution 0.421 0.402 1.028 1.181 sum -14.471 5.344 -11.625 19.315 Atomic orbital electron populations 1.22159 0.94804 1.02396 1.02746 1.21018 0.93441 0.97770 0.83520 0.89121 1.22518 0.89371 1.00981 0.95945 1.61584 1.03024 1.12325 1.47038 1.22568 1.03118 0.88430 0.98603 1.21882 0.96436 0.97494 0.92835 1.19713 0.87661 0.84257 0.85545 1.90494 1.69963 1.54267 1.31362 1.41863 1.10377 1.42763 1.25028 1.19640 0.84970 1.27194 1.11083 0.87990 1.25248 1.00469 0.96667 0.95463 1.69602 1.37529 1.32833 1.14389 0.85933 0.82012 0.78413 0.77971 1.19934 1.20978 1.19849 1.45694 1.65771 1.14421 1.08668 1.17809 0.77765 0.86329 0.82838 1.90776 1.50688 1.15230 1.85047 1.20933 1.04436 0.95566 0.94925 1.23167 0.91469 0.90656 0.97310 1.67793 1.11854 1.38165 0.98523 1.23178 0.95788 0.90215 0.96981 1.18661 1.04397 0.92804 0.82300 1.91547 1.93472 1.82568 1.42946 1.21760 0.94189 1.01872 0.90189 0.91435 0.91825 0.92162 0.93271 0.90093 0.96644 0.88551 0.92147 0.93419 0.89388 0.77529 0.91815 0.75829 0.81292 0.81024 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.15 1.53 2.35 -67.93 -0.16 1.37 16 3 H 0.09 1.11 6.23 -51.93 -0.32 0.79 16 4 C 0.04 0.43 4.52 -3.82 -0.02 0.41 16 5 N -0.52 -7.55 4.22 -244.37 -1.03 -8.58 16 6 C 0.02 0.32 8.96 60.07 0.54 0.86 16 7 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 8 C 0.44 9.89 7.48 -10.98 -0.08 9.81 16 9 O -0.58 -14.84 13.91 5.55 0.08 -14.76 16 10 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 11 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 12 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 15 Si 0.93 20.81 29.55 -169.99 -5.02 15.78 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 N -0.69 -7.51 4.76 -54.75 -0.26 -7.77 16 20 C 0.57 7.09 7.75 -12.33 -0.10 7.00 16 21 O -0.54 -8.22 16.08 5.32 0.09 -8.14 16 22 C -0.15 -1.73 5.89 -104.83 -0.62 -2.34 16 23 C 0.13 1.41 10.71 -17.14 -0.18 1.23 16 24 N -0.46 -5.13 10.34 -12.86 -0.13 -5.27 16 25 C 0.10 0.93 11.16 -17.40 -0.19 0.73 16 26 C 0.04 0.40 7.33 -39.34 -0.29 0.11 16 27 F -0.13 -1.26 17.28 2.25 0.04 -1.23 16 28 C -0.05 -0.57 9.70 -38.80 -0.38 -0.94 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.08 0.73 7.93 -51.93 -0.41 0.31 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 36 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 37 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 38 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 39 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.41 3.89 6.67 -40.82 -0.27 3.61 16 42 H 0.17 1.49 6.42 -52.49 -0.34 1.15 16 43 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.16 1.63 7.74 -52.48 -0.41 1.22 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -32.54 377.31 -6.88 -39.42 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.60 Total: 11.92 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -1.39 Total: 10.14 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.76 Total: -58.83 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.90 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.54 -6.88 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716475673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.434 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds