Wall clock time and date at job start Tue Mar 31 2020 20:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47056 * 2 1 4 4 C 1.53001 * 109.47210 * 119.99744 * 2 1 3 5 5 N 1.46902 * 109.47141 * 175.00342 * 4 2 1 6 6 C 1.46903 * 110.99948 * 66.04799 * 5 4 2 7 7 C 1.46896 * 110.99831 * 189.99998 * 5 4 2 8 8 C 1.50702 * 109.46879 * 169.99874 * 7 5 4 9 9 O 1.21287 * 120.00404 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99781 * 180.02562 * 8 7 5 11 11 C 1.37103 * 119.99681 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00247 * 0.02562 * 11 10 8 13 13 C 1.38950 * 119.99880 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99812 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00098 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47152 * 59.99796 * 15 13 11 17 17 H 1.48499 * 109.47068 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47103 * 300.00089 * 15 13 11 19 19 N 1.46498 * 109.47616 * 240.00162 * 2 1 3 20 20 C 1.34778 * 120.00295 * 84.99142 * 19 2 1 21 21 O 1.21554 * 119.99530 * 0.02562 * 20 19 2 22 22 C 1.47843 * 120.00143 * 180.02562 * 20 19 2 23 23 C 1.39557 * 120.54533 * 0.02562 * 22 20 19 24 24 N 1.31654 * 120.61855 * 179.74399 * 23 22 20 25 25 C 1.31943 * 121.90952 * 0.25968 * 24 23 22 26 26 C 1.38533 * 121.04467 * 359.97438 * 25 24 23 27 27 F 1.35093 * 120.37353 * 180.02562 * 26 25 24 28 28 C 1.38610 * 119.25020 * 0.02562 * 26 25 24 29 29 H 1.09003 * 109.47045 * 300.00204 * 1 2 3 30 30 H 1.09002 * 109.47071 * 60.00234 * 1 2 3 31 31 H 1.09001 * 109.46635 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47323 * 295.00478 * 4 2 1 33 33 H 1.08998 * 109.46953 * 55.00090 * 4 2 1 34 34 H 1.08998 * 109.46999 * 60.00053 * 6 5 4 35 35 H 1.09005 * 109.46751 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.46977 * 299.99563 * 6 5 4 37 37 H 1.08995 * 109.47291 * 289.99827 * 7 5 4 38 38 H 1.08999 * 109.47234 * 50.00298 * 7 5 4 39 39 H 0.96996 * 120.00250 * 0.02562 * 10 8 7 40 40 H 0.97006 * 119.99534 * 179.97438 * 14 13 11 41 41 H 0.97001 * 119.99984 * 264.99937 * 19 2 1 42 42 H 1.08002 * 119.69335 * 0.03112 * 23 22 20 43 43 H 1.08004 * 119.47290 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.86735 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5041 -0.8265 1.1905 6 6 4.1310 0.4995 1.2721 7 6 4.0107 -1.7142 2.2455 8 6 5.4725 -1.9935 2.0079 9 8 6.0367 -1.5011 1.0538 10 7 6.1527 -2.7904 2.8557 11 6 7.4824 -3.0449 2.6392 12 1 7.9848 -2.6065 1.7896 13 6 8.1837 -3.8669 3.5128 14 7 7.5725 -4.4000 4.5468 15 14 9.9955 -4.2132 3.2183 16 1 10.7535 -2.9363 3.2407 17 1 10.5076 -5.1110 4.2845 18 1 10.1660 -4.8668 1.8959 19 7 2.0184 -0.6905 -1.1961 20 6 2.1471 -0.0182 -2.3572 21 8 1.8582 1.1612 -2.4116 22 6 2.6395 -0.7153 -3.5644 23 6 2.9738 -2.0693 -3.5148 24 7 3.4077 -2.6927 -4.5902 25 6 3.5489 -2.0728 -5.7464 26 6 3.2432 -0.7281 -5.8780 27 9 3.3924 -0.1070 -7.0684 28 6 2.7825 -0.0270 -4.7746 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7197 1.2952 34 1 3.8523 0.9759 2.2120 35 1 5.2148 0.3924 1.2258 36 1 3.7911 1.1140 0.4384 37 1 3.8857 -1.2336 3.2158 38 1 3.4546 -2.6515 2.2300 39 1 5.7015 -3.1845 3.6185 40 1 8.0620 -4.9742 5.1565 41 1 2.2492 -1.6317 -1.1526 42 1 2.8714 -2.6120 -2.5867 43 1 3.9085 -2.6226 -6.6036 44 1 2.5361 1.0220 -4.8479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716475673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:26 Heat of formation + Delta-G solvation = -93.354548 kcal Electronic energy + Delta-G solvation = -28884.665837 eV Core-core repulsion = 24557.966252 eV Total energy + Delta-G solvation = -4326.699586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.11548 -41.72877 -40.50700 -40.04601 -38.29055 -36.14600 -35.55773 -33.82328 -33.23772 -32.85882 -31.24572 -29.45843 -27.98531 -26.66258 -26.08706 -24.78004 -23.94136 -22.26229 -21.43268 -20.91595 -19.81562 -19.49010 -18.54209 -18.05507 -17.82479 -17.17456 -17.13467 -16.98310 -16.63704 -16.51806 -16.16268 -15.93932 -15.57282 -15.25750 -15.09644 -14.99587 -14.84245 -14.44390 -14.33663 -14.13861 -13.64170 -13.52269 -13.45170 -13.32771 -13.10112 -12.85887 -12.77264 -12.62801 -12.43075 -12.37505 -12.12111 -11.70937 -11.53999 -11.42080 -11.13855 -10.68907 -10.28100 -10.21749 -10.00932 -9.95744 -9.19543 -8.43791 -5.91418 -0.64246 -0.18509 1.40569 1.42616 1.52654 1.67482 2.00910 2.11784 2.29996 2.57577 2.75670 2.85630 3.16988 3.24011 3.46203 3.54242 3.58223 3.63044 3.79400 3.97474 4.16908 4.24318 4.34291 4.40833 4.44724 4.56900 4.57894 4.61338 4.63835 4.73059 4.74489 4.80829 4.84142 5.05263 5.20148 5.32557 5.34297 5.43901 5.48695 5.89859 6.07887 6.20958 6.46304 6.56185 6.65323 7.11328 7.17565 7.62471 8.18962 8.73359 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.002823 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.655754 B = 9917.176231 C =11907.907494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.069 0.931 4 C 0.045 3.955 5 N -0.529 5.529 6 C 0.030 3.970 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.614 6.614 10 N -0.576 5.576 11 C -0.330 4.330 12 H 0.077 0.923 13 C -0.011 4.011 14 N -0.921 5.921 15 Si 0.987 3.013 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.688 5.688 20 C 0.565 3.435 21 O -0.574 6.574 22 C -0.165 4.165 23 C 0.133 3.867 24 N -0.475 5.475 25 C 0.104 3.896 26 C 0.039 3.961 27 F -0.126 7.126 28 C -0.059 4.059 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.412 0.588 42 H 0.185 0.815 43 H 0.202 0.798 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 3.943 -11.340 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.087 0.913 4 C -0.082 4.082 5 N -0.253 5.253 6 C -0.118 4.118 7 C -0.073 4.073 8 C 0.229 3.771 9 O -0.500 6.500 10 N -0.214 5.214 11 C -0.459 4.459 12 H 0.095 0.905 13 C -0.211 4.211 14 N -0.562 5.562 15 Si 0.811 3.189 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.338 5.338 20 C 0.352 3.648 21 O -0.455 6.455 22 C -0.170 4.170 23 C -0.025 4.025 24 N -0.182 5.182 25 C -0.054 4.054 26 C 0.018 3.982 27 F -0.105 7.105 28 C -0.086 4.086 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.250 0.750 42 H 0.202 0.798 43 H 0.218 0.782 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.122 3.891 -12.237 20.611 hybrid contribution 0.753 0.773 0.840 1.368 sum -15.369 4.664 -11.397 19.694 Atomic orbital electron populations 1.22077 0.92803 1.03517 1.02778 1.21073 0.94879 0.96563 0.83266 0.91325 1.22615 0.86280 1.02862 0.96471 1.61500 1.05578 1.11427 1.46801 1.22345 1.00447 0.89439 0.99575 1.21764 0.91976 0.99498 0.94064 1.20857 0.90061 0.82143 0.84008 1.90482 1.71643 1.55095 1.32808 1.41929 1.09780 1.43821 1.25842 1.19572 0.86712 1.28502 1.11161 0.90530 1.25943 1.04065 0.96067 0.95043 1.69657 1.38818 1.33000 1.14713 0.85073 0.77457 0.78249 0.78089 1.19976 1.19581 1.19765 1.45717 1.64996 1.14679 1.08411 1.17996 0.77355 0.85970 0.83525 1.90753 1.52459 1.16655 1.85629 1.20877 1.05509 0.95932 0.94684 1.23392 0.90791 0.90402 0.97886 1.67862 1.12644 1.38595 0.99114 1.23632 0.94387 0.90096 0.97331 1.18651 1.04486 0.93018 0.82057 1.91549 1.93479 1.82620 1.42837 1.21858 0.94199 1.02038 0.90522 0.89806 0.93414 0.90446 0.91390 0.87480 0.95014 0.92889 0.91967 0.91498 0.86289 0.77031 0.91404 0.75015 0.79836 0.78163 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.48 71.98 0.68 -1.49 16 2 C 0.15 2.77 2.35 44.99 0.11 2.88 16 3 H 0.07 1.64 6.23 -2.38 -0.01 1.62 16 4 C 0.05 0.80 4.52 86.30 0.39 1.19 16 5 N -0.53 -14.45 4.22 -927.06 -3.92 -18.36 16 6 C 0.03 0.93 8.96 127.69 1.14 2.08 16 7 C 0.06 1.74 5.45 85.56 0.47 2.21 16 8 C 0.44 19.69 7.48 87.66 0.66 20.34 16 9 O -0.61 -32.34 13.91 -3.05 -0.04 -32.38 16 10 N -0.58 -28.29 5.29 -306.98 -1.62 -29.92 16 11 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 12 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 13 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 14 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 15 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 N -0.69 -14.10 4.76 -445.41 -2.12 -16.22 16 20 C 0.57 14.15 7.75 86.79 0.67 14.82 16 21 O -0.57 -17.91 16.08 -3.88 -0.06 -17.97 16 22 C -0.16 -3.70 5.89 -20.00 -0.12 -3.82 16 23 C 0.13 2.74 10.71 85.04 0.91 3.65 16 24 N -0.47 -10.15 10.34 -194.59 -2.01 -12.16 16 25 C 0.10 1.84 11.16 84.75 0.95 2.79 16 26 C 0.04 0.76 7.33 22.43 0.16 0.92 16 27 F -0.13 -2.42 17.28 44.97 0.78 -1.64 16 28 C -0.06 -1.27 9.70 22.78 0.22 -1.05 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 33 H 0.11 1.40 7.93 -2.39 -0.02 1.38 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 2.12 5.82 -2.38 -0.01 2.10 16 36 H 0.06 1.87 6.58 -2.39 -0.02 1.85 16 37 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 38 H 0.12 2.90 7.93 -2.39 -0.02 2.88 16 39 H 0.40 18.40 7.90 -92.71 -0.73 17.66 16 40 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 41 H 0.41 7.21 6.67 -92.71 -0.62 6.59 16 42 H 0.18 3.02 6.42 -2.91 -0.02 3.00 16 43 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.16 3.36 7.74 -2.91 -0.02 3.33 16 Total: -1.00 -72.11 377.31 0.55 -71.56 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.28 Total: 34.12 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 7.52 Total: 26.89 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -9.39 Total: -125.15 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.10 Total: -50.35 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -72.11 0.55 -71.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716475673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.793 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds