Wall clock time and date at job start Tue Mar 31 2020 20:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47043 * 2 1 4 4 C 1.53001 * 109.46744 * 240.00294 * 2 1 3 5 5 N 1.46902 * 109.47161 * 184.99785 * 4 2 1 6 6 C 1.46895 * 111.00277 * 293.95832 * 5 4 2 7 7 C 1.46896 * 111.00168 * 169.99573 * 5 4 2 8 8 C 1.50696 * 109.47184 * 190.00084 * 7 5 4 9 9 O 1.21289 * 120.00275 * 0.02562 * 8 7 5 10 10 N 1.34782 * 120.00026 * 180.02562 * 8 7 5 11 11 C 1.37098 * 120.00004 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99986 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99991 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99976 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47603 * 59.99757 * 15 13 11 17 17 H 1.48504 * 109.47037 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47035 * 299.99338 * 15 13 11 19 19 N 1.46493 * 109.47065 * 120.00658 * 2 1 3 20 20 C 1.34778 * 119.99960 * 274.99546 * 19 2 1 21 21 O 1.21558 * 119.99952 * 0.02562 * 20 19 2 22 22 C 1.47848 * 120.00481 * 179.97438 * 20 19 2 23 23 C 1.39557 * 120.54182 * 0.02562 * 22 20 19 24 24 N 1.31663 * 120.62077 * 179.71706 * 23 22 20 25 25 C 1.31943 * 121.90711 * 0.28045 * 24 23 22 26 26 C 1.38533 * 121.04486 * 359.97381 * 25 24 23 27 27 F 1.35093 * 120.37404 * 180.02562 * 26 25 24 28 28 C 1.38619 * 119.25217 * 0.02562 * 26 25 24 29 29 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46713 * 299.99741 * 1 2 3 31 31 H 1.08994 * 109.46969 * 59.99668 * 1 2 3 32 32 H 1.08995 * 109.47258 * 305.00093 * 4 2 1 33 33 H 1.08998 * 109.47075 * 65.00001 * 4 2 1 34 34 H 1.09004 * 109.47351 * 59.99312 * 6 5 4 35 35 H 1.08998 * 109.47229 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.46801 * 300.00044 * 6 5 4 37 37 H 1.08991 * 109.47449 * 310.00713 * 7 5 4 38 38 H 1.09009 * 109.46737 * 70.00668 * 7 5 4 39 39 H 0.96996 * 120.00110 * 0.02562 * 10 8 7 40 40 H 0.96995 * 119.99922 * 179.97438 * 14 13 11 41 41 H 0.97001 * 120.00307 * 94.99657 * 19 2 1 42 42 H 1.08002 * 119.69336 * 359.97438 * 23 22 20 43 43 H 1.07995 * 119.47514 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.86931 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1906 6 6 4.1311 0.4993 -1.2720 7 6 4.0107 -1.7144 -2.2456 8 6 5.4723 -1.9937 -2.0081 9 8 6.0365 -1.5021 -1.0535 10 7 6.1528 -2.7899 -2.8564 11 6 7.4825 -3.0445 -2.6400 12 1 7.9845 -2.6073 -1.7896 13 6 8.1841 -3.8648 -3.5148 14 7 7.5731 -4.3971 -4.5494 15 14 9.9956 -4.2123 -3.2196 16 1 10.1649 -4.8688 -1.8984 17 1 10.5080 -5.1090 -4.2866 18 1 10.7540 -2.9356 -3.2388 19 7 2.0184 -0.6907 1.1960 20 6 2.1472 -0.0185 2.3571 21 8 1.8577 1.1609 2.4119 22 6 2.6394 -0.7156 3.5644 23 6 2.9745 -2.0694 3.5145 24 7 3.4183 -2.6904 4.5873 25 6 3.5591 -2.0707 5.7436 26 6 3.2435 -0.7285 5.8780 27 9 3.3934 -0.1074 7.0682 28 6 2.7722 -0.0300 4.7773 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6053 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 3.7911 1.1138 -0.4384 35 1 5.2148 0.3922 -1.2259 36 1 3.8524 0.9758 -2.2120 37 1 3.4544 -2.6515 -2.2301 38 1 3.8857 -1.2336 -3.2160 39 1 5.7018 -3.1828 -3.6200 40 1 8.0629 -4.9695 -5.1603 41 1 2.2490 -1.6319 1.1524 42 1 2.8728 -2.6119 2.5861 43 1 3.9263 -2.6185 6.5988 44 1 2.5186 1.0171 4.8525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716475674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:30 Heat of formation + Delta-G solvation = -68.859220 kcal Electronic energy + Delta-G solvation = -28883.779685 eV Core-core repulsion = 24558.142297 eV Total energy + Delta-G solvation = -4325.637388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.31511 -40.84925 -39.44104 -38.58489 -37.04295 -34.86375 -33.81870 -32.95153 -32.01872 -31.26757 -30.40827 -28.04878 -26.98110 -25.33769 -24.77169 -23.95070 -22.76496 -21.30927 -20.51827 -19.18880 -18.61279 -17.86589 -17.70034 -17.26523 -16.52385 -16.23840 -16.16052 -16.03452 -15.42008 -14.96921 -14.77667 -14.67970 -14.23005 -14.15450 -14.05463 -13.68752 -13.59234 -13.51486 -13.41332 -12.95603 -12.68015 -12.61482 -12.17522 -12.08798 -11.89375 -11.53756 -11.41072 -11.27431 -10.94016 -10.80373 -10.59030 -10.45749 -10.26943 -10.23556 -9.79582 -9.49047 -9.41614 -9.15339 -8.50665 -8.01768 -7.92198 -6.44095 -3.84932 0.18647 0.64575 2.58586 2.87348 3.18516 3.24538 3.28763 3.43311 3.63371 3.86011 3.88922 3.96646 4.21058 4.34181 4.38185 4.43864 4.65462 4.77339 4.96801 5.05441 5.12172 5.20175 5.22927 5.35960 5.39072 5.45380 5.50667 5.55927 5.65716 5.68784 5.83893 5.89901 5.94075 6.00249 6.13151 6.24137 6.34627 6.53430 7.17204 7.28159 7.34086 7.38677 7.52917 8.02582 8.03705 8.59166 9.15877 9.51808 10.03548 10.73542 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.002823 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.196852 B = 9915.921798 C =11908.599697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.091 0.909 4 C 0.041 3.959 5 N -0.516 5.516 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.443 3.557 9 O -0.577 6.577 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.695 5.695 20 C 0.567 3.433 21 O -0.539 6.539 22 C -0.153 4.153 23 C 0.132 3.868 24 N -0.456 5.456 25 C 0.097 3.903 26 C 0.040 3.960 27 F -0.127 7.127 28 C -0.053 4.053 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.015 0.985 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.405 0.595 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.501 4.972 11.735 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.088 4.088 5 N -0.240 5.240 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.228 3.772 9 O -0.461 6.461 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.345 5.345 20 C 0.353 3.647 21 O -0.417 6.417 22 C -0.158 4.158 23 C -0.026 4.026 24 N -0.163 5.163 25 C -0.062 4.062 26 C 0.018 3.982 27 F -0.105 7.105 28 C -0.080 4.080 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.034 0.966 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.242 0.758 42 H 0.187 0.813 43 H 0.190 0.810 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.894 4.939 12.656 20.159 hybrid contribution 0.415 0.402 -1.027 1.178 sum -14.479 5.340 11.629 19.323 Atomic orbital electron populations 1.22158 0.94802 1.02397 1.02746 1.21017 0.93443 0.97767 0.83521 0.89121 1.22518 0.89368 1.00982 0.95946 1.61577 1.03025 1.12328 1.47048 1.22566 1.03111 0.88430 0.98603 1.21882 0.96435 0.97492 0.92833 1.19712 0.87663 0.84249 0.85554 1.90495 1.69975 1.54271 1.31347 1.41862 1.10383 1.42820 1.24964 1.19639 0.84970 1.27273 1.10999 0.87990 1.25249 1.00473 0.96664 0.95467 1.69601 1.37509 1.32925 1.14325 0.85933 0.82007 0.78415 0.77970 1.19854 1.20979 1.19929 1.45692 1.65772 1.14412 1.08673 1.17812 0.77756 0.86333 0.82843 1.90777 1.50671 1.15244 1.85050 1.20934 1.04469 0.95575 0.94869 1.23171 0.91455 0.90657 0.97336 1.67797 1.11840 1.38116 0.98568 1.23176 0.95834 0.90217 0.96939 1.18664 1.04312 0.92841 0.82337 1.91547 1.93472 1.82544 1.42969 1.21762 0.94225 1.01860 0.90178 0.92161 0.91825 0.91437 0.90092 0.93271 0.92148 0.88555 0.96647 0.89386 0.93421 0.77530 0.91814 0.75827 0.81292 0.81025 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.15 1.53 2.35 -67.93 -0.16 1.37 16 3 H 0.09 1.11 6.23 -51.93 -0.32 0.79 16 4 C 0.04 0.43 4.52 -3.82 -0.02 0.41 16 5 N -0.52 -7.55 4.22 -244.38 -1.03 -8.58 16 6 C 0.02 0.32 8.96 60.06 0.54 0.86 16 7 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 8 C 0.44 9.89 7.47 -10.99 -0.08 9.81 16 9 O -0.58 -14.84 13.91 5.55 0.08 -14.76 16 10 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 11 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 12 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 15 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 19 N -0.69 -7.51 4.75 -54.75 -0.26 -7.77 16 20 C 0.57 7.09 7.75 -12.33 -0.10 7.00 16 21 O -0.54 -8.22 16.08 5.31 0.09 -8.14 16 22 C -0.15 -1.73 5.89 -104.83 -0.62 -2.34 16 23 C 0.13 1.41 10.71 -17.13 -0.18 1.23 16 24 N -0.46 -5.14 10.34 -12.86 -0.13 -5.27 16 25 C 0.10 0.93 11.16 -17.39 -0.19 0.73 16 26 C 0.04 0.40 7.33 -39.33 -0.29 0.11 16 27 F -0.13 -1.26 17.28 2.25 0.04 -1.23 16 28 C -0.05 -0.57 9.70 -38.80 -0.38 -0.95 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.73 7.93 -51.93 -0.41 0.31 16 33 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 38 H 0.05 0.72 8.12 -51.92 -0.42 0.30 16 39 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.41 3.89 6.67 -40.82 -0.27 3.61 16 42 H 0.17 1.49 6.42 -52.49 -0.34 1.15 16 43 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.16 1.62 7.74 -52.48 -0.41 1.22 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -32.54 377.32 -6.88 -39.42 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.60 Total: 11.92 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -1.39 Total: 10.14 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.76 Total: -58.83 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.90 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.54 -6.88 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716475674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.435 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds