Wall clock time and date at job start Tue Mar 31 2020 20:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47043 * 2 1 4 4 C 1.53001 * 109.46744 * 240.00294 * 2 1 3 5 5 N 1.46902 * 109.47161 * 184.99785 * 4 2 1 6 6 C 1.46895 * 111.00277 * 293.95832 * 5 4 2 7 7 C 1.46896 * 111.00168 * 169.99573 * 5 4 2 8 8 C 1.50696 * 109.47184 * 190.00084 * 7 5 4 9 9 O 1.21289 * 120.00275 * 0.02562 * 8 7 5 10 10 N 1.34782 * 120.00026 * 180.02562 * 8 7 5 11 11 C 1.37098 * 120.00004 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99986 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99991 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99904 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99976 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47603 * 59.99757 * 15 13 11 17 17 H 1.48504 * 109.47037 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47035 * 299.99338 * 15 13 11 19 19 N 1.46493 * 109.47065 * 120.00658 * 2 1 3 20 20 C 1.34778 * 119.99960 * 274.99546 * 19 2 1 21 21 O 1.21558 * 119.99952 * 0.02562 * 20 19 2 22 22 C 1.47848 * 120.00481 * 179.97438 * 20 19 2 23 23 C 1.39557 * 120.54182 * 0.02562 * 22 20 19 24 24 N 1.31663 * 120.62077 * 179.71706 * 23 22 20 25 25 C 1.31943 * 121.90711 * 0.28045 * 24 23 22 26 26 C 1.38533 * 121.04486 * 359.97381 * 25 24 23 27 27 F 1.35093 * 120.37404 * 180.02562 * 26 25 24 28 28 C 1.38619 * 119.25217 * 0.02562 * 26 25 24 29 29 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46713 * 299.99741 * 1 2 3 31 31 H 1.08994 * 109.46969 * 59.99668 * 1 2 3 32 32 H 1.08995 * 109.47258 * 305.00093 * 4 2 1 33 33 H 1.08998 * 109.47075 * 65.00001 * 4 2 1 34 34 H 1.09004 * 109.47351 * 59.99312 * 6 5 4 35 35 H 1.08998 * 109.47229 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.46801 * 300.00044 * 6 5 4 37 37 H 1.08991 * 109.47449 * 310.00713 * 7 5 4 38 38 H 1.09009 * 109.46737 * 70.00668 * 7 5 4 39 39 H 0.96996 * 120.00110 * 0.02562 * 10 8 7 40 40 H 0.96995 * 119.99922 * 179.97438 * 14 13 11 41 41 H 0.97001 * 120.00307 * 94.99657 * 19 2 1 42 42 H 1.08002 * 119.69336 * 359.97438 * 23 22 20 43 43 H 1.07995 * 119.47514 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.86931 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1906 6 6 4.1311 0.4993 -1.2720 7 6 4.0107 -1.7144 -2.2456 8 6 5.4723 -1.9937 -2.0081 9 8 6.0365 -1.5021 -1.0535 10 7 6.1528 -2.7899 -2.8564 11 6 7.4825 -3.0445 -2.6400 12 1 7.9845 -2.6073 -1.7896 13 6 8.1841 -3.8648 -3.5148 14 7 7.5731 -4.3971 -4.5494 15 14 9.9956 -4.2123 -3.2196 16 1 10.1649 -4.8688 -1.8984 17 1 10.5080 -5.1090 -4.2866 18 1 10.7540 -2.9356 -3.2388 19 7 2.0184 -0.6907 1.1960 20 6 2.1472 -0.0185 2.3571 21 8 1.8577 1.1609 2.4119 22 6 2.6394 -0.7156 3.5644 23 6 2.9745 -2.0694 3.5145 24 7 3.4183 -2.6904 4.5873 25 6 3.5591 -2.0707 5.7436 26 6 3.2435 -0.7285 5.8780 27 9 3.3934 -0.1074 7.0682 28 6 2.7722 -0.0300 4.7773 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6053 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 3.7911 1.1138 -0.4384 35 1 5.2148 0.3922 -1.2259 36 1 3.8524 0.9758 -2.2120 37 1 3.4544 -2.6515 -2.2301 38 1 3.8857 -1.2336 -3.2160 39 1 5.7018 -3.1828 -3.6200 40 1 8.0629 -4.9695 -5.1603 41 1 2.2490 -1.6319 1.1524 42 1 2.8728 -2.6119 2.5861 43 1 3.9263 -2.6185 6.5988 44 1 2.5186 1.0171 4.8525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716475674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:29 Heat of formation + Delta-G solvation = -93.366700 kcal Electronic energy + Delta-G solvation = -28884.842409 eV Core-core repulsion = 24558.142297 eV Total energy + Delta-G solvation = -4326.700113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.11547 -41.72785 -40.50689 -40.04558 -38.29062 -36.14617 -35.55782 -33.82298 -33.23730 -32.85808 -31.24574 -29.45895 -27.98560 -26.66307 -26.08684 -24.78009 -23.94179 -22.26238 -21.43338 -20.91602 -19.81617 -19.48989 -18.54214 -18.05511 -17.82500 -17.17498 -17.13486 -16.98286 -16.63742 -16.51816 -16.16264 -15.93866 -15.57242 -15.25826 -15.09647 -14.99580 -14.84365 -14.44290 -14.33679 -14.13839 -13.64157 -13.52210 -13.45224 -13.32743 -13.10107 -12.85902 -12.77286 -12.62839 -12.43087 -12.37527 -12.12087 -11.70970 -11.54000 -11.42087 -11.13812 -10.68941 -10.28098 -10.21789 -10.00928 -9.95729 -9.19520 -8.43787 -5.91430 -0.64235 -0.18566 1.40553 1.42620 1.52634 1.67526 2.00800 2.11750 2.29991 2.57532 2.75641 2.85625 3.17037 3.23979 3.46205 3.54252 3.58201 3.63047 3.79415 3.97482 4.16901 4.24300 4.34264 4.40810 4.44691 4.56871 4.57887 4.61347 4.63847 4.73060 4.74474 4.80852 4.84159 5.05285 5.20115 5.32611 5.34294 5.43900 5.48691 5.89858 6.07899 6.20962 6.46297 6.56185 6.65312 7.11306 7.17554 7.62458 8.18943 8.73383 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.002823 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.196852 B = 9915.921798 C =11908.599697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.069 0.931 4 C 0.045 3.955 5 N -0.529 5.529 6 C 0.030 3.970 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.614 6.614 10 N -0.576 5.576 11 C -0.330 4.330 12 H 0.077 0.923 13 C -0.012 4.012 14 N -0.921 5.921 15 Si 0.987 3.013 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.274 1.274 19 N -0.688 5.688 20 C 0.565 3.435 21 O -0.574 6.574 22 C -0.165 4.165 23 C 0.133 3.867 24 N -0.475 5.475 25 C 0.104 3.896 26 C 0.039 3.961 27 F -0.126 7.126 28 C -0.059 4.059 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.412 0.588 42 H 0.185 0.815 43 H 0.202 0.798 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 3.946 11.342 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.087 0.913 4 C -0.082 4.082 5 N -0.253 5.253 6 C -0.118 4.118 7 C -0.073 4.073 8 C 0.229 3.771 9 O -0.500 6.500 10 N -0.214 5.214 11 C -0.459 4.459 12 H 0.095 0.905 13 C -0.211 4.211 14 N -0.562 5.562 15 Si 0.811 3.189 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.200 1.200 19 N -0.338 5.338 20 C 0.352 3.648 21 O -0.455 6.455 22 C -0.170 4.170 23 C -0.025 4.025 24 N -0.182 5.182 25 C -0.055 4.055 26 C 0.018 3.982 27 F -0.105 7.105 28 C -0.086 4.086 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.250 0.750 42 H 0.202 0.798 43 H 0.218 0.782 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.124 3.893 12.239 20.613 hybrid contribution 0.746 0.772 -0.839 1.362 sum -15.378 4.665 11.400 19.702 Atomic orbital electron populations 1.22077 0.92800 1.03518 1.02778 1.21072 0.94883 0.96559 0.83266 0.91325 1.22615 0.86276 1.02863 0.96472 1.61493 1.05579 1.11430 1.46811 1.22344 1.00441 0.89439 0.99576 1.21763 0.91975 0.99497 0.94063 1.20857 0.90063 0.82134 0.84017 1.90483 1.71655 1.55099 1.32794 1.41928 1.09786 1.43878 1.25778 1.19571 0.86712 1.28584 1.11073 0.90530 1.25943 1.04069 0.96064 0.95047 1.69655 1.38797 1.33093 1.14651 0.85072 0.77456 0.78252 0.78084 1.19777 1.19583 1.19963 1.45715 1.64996 1.14671 1.08416 1.17998 0.77346 0.85974 0.83530 1.90754 1.52443 1.16668 1.85631 1.20878 1.05545 0.95943 0.94630 1.23394 0.90776 0.90403 0.97906 1.67866 1.12631 1.38556 0.99164 1.23629 0.94453 0.90093 0.97279 1.18654 1.04401 0.93053 0.82100 1.91549 1.93479 1.82595 1.42861 1.21860 0.94225 1.02024 0.90501 0.90445 0.93412 0.89808 0.87478 0.91390 0.91968 0.92893 0.95016 0.86287 0.91499 0.77031 0.91403 0.75013 0.79839 0.78172 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.48 71.98 0.68 -1.49 16 2 C 0.15 2.77 2.35 45.00 0.11 2.88 16 3 H 0.07 1.64 6.23 -2.39 -0.01 1.62 16 4 C 0.05 0.80 4.52 86.30 0.39 1.19 16 5 N -0.53 -14.45 4.22 -927.08 -3.92 -18.36 16 6 C 0.03 0.93 8.96 127.69 1.14 2.08 16 7 C 0.06 1.74 5.45 85.56 0.47 2.21 16 8 C 0.44 19.69 7.47 87.65 0.66 20.34 16 9 O -0.61 -32.34 13.91 -3.06 -0.04 -32.38 16 10 N -0.58 -28.29 5.29 -306.99 -1.62 -29.92 16 11 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 12 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 13 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 14 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 15 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 N -0.69 -14.10 4.75 -445.41 -2.12 -16.21 16 20 C 0.57 14.14 7.75 86.79 0.67 14.82 16 21 O -0.57 -17.90 16.08 -3.90 -0.06 -17.97 16 22 C -0.16 -3.70 5.89 -20.00 -0.12 -3.81 16 23 C 0.13 2.74 10.71 85.04 0.91 3.65 16 24 N -0.47 -10.16 10.34 -194.59 -2.01 -12.17 16 25 C 0.10 1.85 11.16 84.75 0.95 2.79 16 26 C 0.04 0.76 7.33 22.43 0.16 0.93 16 27 F -0.13 -2.42 17.28 44.97 0.78 -1.64 16 28 C -0.06 -1.27 9.70 22.78 0.22 -1.05 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.40 7.93 -2.39 -0.02 1.38 16 33 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 34 H 0.06 1.87 6.58 -2.38 -0.02 1.85 16 35 H 0.05 2.11 5.82 -2.39 -0.01 2.10 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 2.90 7.93 -2.39 -0.02 2.88 16 38 H 0.07 1.81 8.12 -2.38 -0.02 1.79 16 39 H 0.40 18.40 7.90 -92.71 -0.73 17.67 16 40 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.41 7.21 6.67 -92.71 -0.62 6.59 16 42 H 0.18 3.02 6.42 -2.91 -0.02 3.00 16 43 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 44 H 0.16 3.35 7.74 -2.91 -0.02 3.33 16 Total: -1.00 -72.12 377.32 0.55 -71.57 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.28 Total: 34.12 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 7.52 Total: 26.90 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -9.39 Total: -125.17 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.11 Total: -50.35 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.12 0.55 -71.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716475674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.794 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds