Wall clock time and date at job start Tue Mar 31 2020 20:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46985 * 2 1 4 4 C 1.52995 * 109.47095 * 120.00181 * 2 1 3 5 5 N 1.46506 * 109.47125 * 174.99729 * 4 2 1 6 6 C 1.34773 * 120.00163 * 179.97438 * 5 4 2 7 7 O 1.21569 * 120.00263 * 0.02562 * 6 5 4 8 8 C 1.47724 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.40156 * 120.52741 * 180.02562 * 8 6 5 10 10 C 1.38158 * 118.32147 * 179.97438 * 9 8 6 11 11 C 1.38747 * 119.28442 * 0.02562 * 10 9 8 12 12 F 1.35097 * 119.49266 * 180.02562 * 11 10 9 13 13 N 1.32143 * 121.01831 * 359.97191 * 11 10 9 14 14 C 1.31699 * 121.83804 * 359.77931 * 13 11 10 15 15 N 1.46901 * 109.46538 * 240.00093 * 2 1 3 16 16 C 1.46902 * 111.00040 * 306.04362 * 15 2 1 17 17 C 1.46899 * 111.00103 * 70.00184 * 15 2 1 18 18 C 1.50703 * 109.47107 * 169.99758 * 17 15 2 19 19 O 1.21286 * 120.00016 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00161 * 180.02562 * 18 17 15 21 21 C 1.37091 * 120.00108 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00333 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99712 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99720 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47452 * 60.00137 * 25 23 21 27 27 H 1.48505 * 109.46988 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47061 * 299.99710 * 25 23 21 29 29 H 1.08991 * 109.47175 * 59.99483 * 1 2 3 30 30 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46803 * 299.99914 * 1 2 3 32 32 H 1.08999 * 109.47349 * 294.99528 * 4 2 1 33 33 H 1.08999 * 109.47584 * 55.00060 * 4 2 1 34 34 H 0.96997 * 119.99390 * 359.97438 * 5 4 2 35 35 H 1.07996 * 120.84189 * 359.95072 * 9 8 6 36 36 H 1.08000 * 120.35112 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.69910 * 180.26143 * 14 13 11 38 38 H 1.09005 * 109.46528 * 183.95480 * 16 15 2 39 39 H 1.09000 * 109.46785 * 303.95569 * 16 15 2 40 40 H 1.08997 * 109.47044 * 63.96124 * 16 15 2 41 41 H 1.09002 * 109.47043 * 289.99738 * 17 15 2 42 42 H 1.09001 * 109.47354 * 49.99799 * 17 15 2 43 43 H 0.97005 * 119.99463 * 359.97438 * 20 18 17 44 44 H 0.96996 * 119.99832 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1732 -1.4284 2.1910 7 8 3.5687 -1.8845 3.1421 8 6 5.6454 -1.5349 2.1315 9 6 6.3564 -2.1590 3.1655 10 6 7.7321 -2.2338 3.0628 11 6 8.3600 -1.6932 1.9499 12 9 9.7050 -1.7645 1.8449 13 7 7.6626 -1.1106 0.9905 14 6 6.3497 -1.0202 1.0428 15 7 2.0196 -0.6925 -1.1995 16 6 1.4342 -2.0355 -1.3078 17 6 1.7528 0.0972 -2.4091 18 6 2.4772 -0.5163 -3.5795 19 8 3.1500 -1.5130 -3.4215 20 7 2.3784 0.0432 -4.8017 21 6 3.0370 -0.5152 -5.8665 22 1 3.6353 -1.4032 -5.7260 23 6 2.9346 0.0614 -7.1266 24 7 2.2070 1.1422 -7.2975 25 14 3.8315 -0.7000 -8.5777 26 1 3.3540 -2.0914 -8.7800 27 1 3.5625 0.0989 -9.8003 28 1 5.2914 -0.7121 -8.3062 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7518 -0.1584 2.1369 33 1 1.6055 -1.7198 1.2951 34 1 3.9823 -0.4629 0.4315 35 1 5.8420 -2.5707 4.0212 36 1 8.3125 -2.7073 3.8409 37 1 5.8139 -0.5404 0.2372 38 1 1.8663 -2.5520 -2.1649 39 1 1.6466 -2.5987 -0.3991 40 1 0.3555 -1.9520 -1.4399 41 1 0.6813 0.1053 -2.6087 42 1 2.1024 1.1189 -2.2604 43 1 1.8407 0.8406 -4.9279 44 1 2.1359 1.5449 -8.1771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717466743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:43 Heat of formation + Delta-G solvation = -86.917565 kcal Electronic energy + Delta-G solvation = -28793.930550 eV Core-core repulsion = 24467.510093 eV Total energy + Delta-G solvation = -4326.420457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.20489 -41.69842 -40.62008 -39.95551 -38.68256 -35.97371 -35.39654 -33.88024 -33.24074 -32.75682 -31.58567 -29.29019 -27.58454 -27.00752 -25.58323 -25.22993 -24.60652 -21.77850 -21.32575 -20.67209 -19.78040 -19.38845 -18.74295 -18.50063 -17.85734 -17.28273 -17.05408 -16.81569 -16.55903 -16.23871 -16.00361 -15.99203 -15.70351 -15.44431 -15.02174 -14.81748 -14.66896 -14.29781 -14.23868 -14.11065 -14.02256 -13.74997 -13.62168 -13.40944 -13.07406 -12.85901 -12.77022 -12.41996 -12.35998 -12.24982 -12.11675 -11.73346 -11.40826 -11.38093 -11.24392 -10.78214 -10.32406 -10.22715 -9.98313 -9.95141 -9.15724 -8.43473 -5.90927 -0.67237 -0.04872 1.40627 1.42701 1.52588 1.64603 2.08460 2.12478 2.30148 2.35064 2.57098 2.78769 3.24490 3.28276 3.48011 3.56004 3.65444 3.77137 3.82466 4.10668 4.17089 4.28850 4.33998 4.40703 4.47953 4.57413 4.61440 4.66995 4.70935 4.72148 4.79157 4.89299 4.89911 5.03986 5.24111 5.32895 5.35464 5.42881 5.44570 5.91262 6.09680 6.23195 6.36795 6.48631 6.65630 7.10527 7.18014 7.63144 8.19346 8.73717 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002874 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.185623 B = 9738.563859 C =12206.137055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.107 0.893 4 C 0.133 3.867 5 N -0.701 5.701 6 C 0.566 3.434 7 O -0.571 6.571 8 C -0.203 4.203 9 C 0.013 3.987 10 C -0.182 4.182 11 C 0.311 3.689 12 F -0.113 7.113 13 N -0.546 5.546 14 C 0.175 3.825 15 N -0.523 5.523 16 C 0.026 3.974 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.577 5.577 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.987 3.013 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.413 0.587 35 H 0.176 0.824 36 H 0.191 0.809 37 H 0.180 0.820 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.395 0.605 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -0.311 21.513 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.040 4.040 3 H 0.125 0.875 4 C 0.010 3.990 5 N -0.352 5.352 6 C 0.353 3.647 7 O -0.452 6.452 8 C -0.208 4.208 9 C -0.013 4.013 10 C -0.202 4.202 11 C 0.159 3.841 12 F -0.092 7.092 13 N -0.261 5.261 14 C 0.017 3.983 15 N -0.247 5.247 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.214 5.214 21 C -0.458 4.458 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.811 3.189 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.193 0.807 36 H 0.208 0.792 37 H 0.196 0.804 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.229 0.771 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.204 -0.880 21.428 21.559 hybrid contribution -0.568 -0.034 -1.152 1.285 sum 1.636 -0.914 20.276 20.363 Atomic orbital electron populations 1.22356 0.95020 1.02930 1.03713 1.22124 0.94709 0.98869 0.88345 0.87495 1.21493 0.78956 1.01012 0.97584 1.45800 1.08521 1.58051 1.22802 1.17948 0.86482 0.77842 0.82412 1.90760 1.70103 1.49757 1.34590 1.21045 0.94605 1.06405 0.98785 1.21876 0.92592 0.89860 0.96976 1.22102 0.95540 1.03525 0.99058 1.18764 0.78798 0.94684 0.91894 1.91638 1.28109 1.93516 1.95958 1.66989 1.10310 1.19194 1.29558 1.22938 0.87205 0.92256 0.95876 1.61728 1.59150 1.02655 1.01138 1.22405 0.96863 0.90546 1.02424 1.21754 0.98753 0.98311 0.88490 1.20836 0.85410 0.86215 0.84517 1.90476 1.45709 1.28710 1.84909 1.41930 1.45064 1.27537 1.06918 1.19579 1.27470 1.11087 0.87713 0.90404 1.25941 0.97977 0.96475 1.00778 1.69655 1.40390 1.20832 1.25394 0.85077 0.78506 0.78138 0.77176 1.19851 1.19675 1.19862 0.91836 0.92224 0.89727 0.89384 0.92015 0.74913 0.80703 0.79214 0.80350 0.92841 0.91177 0.94698 0.91393 0.86814 0.77104 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.44 71.98 0.61 -2.13 16 2 C 0.07 1.21 2.47 44.91 0.11 1.32 16 3 H 0.11 1.60 7.93 -2.39 -0.02 1.58 16 4 C 0.13 2.46 4.85 86.38 0.42 2.87 16 5 N -0.70 -14.33 5.34 -466.09 -2.49 -16.82 16 6 C 0.57 12.94 7.78 86.75 0.67 13.62 16 7 O -0.57 -15.88 16.42 -3.93 -0.06 -15.95 16 8 C -0.20 -4.12 5.89 -20.00 -0.12 -4.24 16 9 C 0.01 0.21 9.71 22.72 0.22 0.43 16 10 C -0.18 -2.63 10.07 22.37 0.23 -2.41 16 11 C 0.31 6.61 8.41 84.77 0.71 7.32 16 12 F -0.11 -2.48 17.29 44.97 0.78 -1.70 16 13 N -0.55 -13.79 10.36 -195.74 -2.03 -15.81 16 14 C 0.18 3.84 10.71 85.02 0.91 4.75 16 15 N -0.52 -13.67 3.89 -901.60 -3.51 -17.17 16 16 C 0.03 0.73 8.32 127.69 1.06 1.80 16 17 C 0.06 1.72 5.02 85.56 0.43 2.15 16 18 C 0.44 19.48 7.51 87.66 0.66 20.14 16 19 O -0.61 -31.53 13.89 -3.05 -0.04 -31.58 16 20 N -0.58 -28.24 5.29 -306.99 -1.62 -29.86 16 21 C -0.33 -18.20 9.68 84.04 0.81 -17.38 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 25 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H 0.06 1.01 6.91 -2.39 -0.02 0.99 16 30 H 0.06 0.98 6.41 -2.39 -0.02 0.96 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.28 6.71 -2.39 -0.02 1.27 16 34 H 0.41 8.27 6.20 -92.71 -0.57 7.70 16 35 H 0.18 2.25 7.73 -2.91 -0.02 2.23 16 36 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.18 3.53 6.42 -2.91 -0.02 3.51 16 38 H 0.05 2.02 5.88 -2.38 -0.01 2.01 16 39 H 0.07 1.83 6.40 -2.39 -0.02 1.81 16 40 H 0.03 0.89 6.46 -2.39 -0.02 0.87 16 41 H 0.07 1.83 7.06 -2.39 -0.02 1.81 16 42 H 0.11 2.85 7.93 -2.39 -0.02 2.83 16 43 H 0.40 18.40 7.90 -92.70 -0.73 17.67 16 44 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -71.02 370.50 0.30 -70.72 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.23 Total: 34.12 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 7.19 Total: 28.06 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -9.36 Total: -128.35 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.11 Total: -47.52 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.78 Total: -1.70 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.02 0.30 -70.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717466743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.193 kcal (2) G-P(sol) polarization free energy of solvation -71.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds