Wall clock time and date at job start Tue Mar 31 2020 20:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21563 * 120.00366 * 359.97438 * 6 5 4 8 8 C 1.47729 * 119.99826 * 179.97438 * 6 5 4 9 9 C 1.40153 * 120.53109 * 179.97438 * 8 6 5 10 10 C 1.38149 * 118.32191 * 179.97438 * 9 8 6 11 11 C 1.38752 * 119.28893 * 0.02562 * 10 9 8 12 12 F 1.35095 * 119.49465 * 179.97438 * 11 10 9 13 13 N 1.32146 * 121.01285 * 359.97417 * 11 10 9 14 14 C 1.31696 * 121.84263 * 359.77299 * 13 11 10 15 15 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 16 16 C 1.46902 * 110.99790 * 58.95192 * 15 2 1 17 17 C 1.46896 * 111.00342 * 295.00322 * 15 2 1 18 18 C 1.50695 * 109.47619 * 189.99958 * 17 15 2 19 19 O 1.21286 * 119.99843 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00467 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00385 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00257 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00040 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99986 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47186 * 60.00291 * 25 23 21 27 27 H 1.48500 * 109.47234 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47148 * 300.00649 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 33 33 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 34 34 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.83803 * 359.95982 * 9 8 6 36 36 H 1.08000 * 120.35891 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.70726 * 180.26589 * 14 13 11 38 38 H 1.09003 * 109.46808 * 60.00632 * 16 15 2 39 39 H 1.09004 * 109.47176 * 180.02562 * 16 15 2 40 40 H 1.08994 * 109.47263 * 300.00333 * 16 15 2 41 41 H 1.09006 * 109.46837 * 310.00141 * 17 15 2 42 42 H 1.09003 * 109.47200 * 69.99229 * 17 15 2 43 43 H 0.97011 * 119.99567 * 359.97438 * 20 18 17 44 44 H 0.96997 * 120.00137 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5684 -1.8858 -3.1414 8 6 5.6453 -1.5345 -2.1320 9 6 6.3562 -2.1595 -3.1656 10 6 7.7321 -2.2323 -3.0640 11 6 8.3602 -1.6899 -1.9520 12 9 9.7054 -1.7593 -1.8482 13 7 7.6629 -1.1066 -0.9930 14 6 6.3507 -1.0094 -1.0489 15 7 2.0197 -0.6925 1.1993 16 6 1.5283 -2.0761 1.2458 17 6 1.6488 0.0390 2.4180 18 6 2.3680 -0.5572 3.6004 19 8 3.1157 -1.4992 3.4435 20 7 2.1797 -0.0444 4.8325 21 6 2.8336 -0.5872 5.9083 22 1 3.4994 -1.4260 5.7685 23 6 2.6398 -0.0581 7.1785 24 7 1.8293 0.9622 7.3486 25 14 3.5302 -0.7981 8.6443 26 1 4.9970 -0.6988 8.4343 27 1 3.1549 -0.0589 9.8763 28 1 3.1463 -2.2255 8.7877 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6055 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1371 34 1 3.9824 -0.4621 -0.4320 35 1 5.8414 -2.5739 -4.0198 36 1 8.3124 -2.7070 -3.8413 37 1 5.8156 -0.5216 -0.2475 38 1 1.8763 -2.6150 0.3646 39 1 1.9054 -2.5656 2.1438 40 1 0.4386 -2.0742 1.2638 41 1 1.9297 1.0869 2.3125 42 1 0.5723 -0.0346 2.5725 43 1 1.5813 0.7088 4.9581 44 1 1.6937 1.3313 8.2353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717466744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:46 Heat of formation + Delta-G solvation = -62.039123 kcal Electronic energy + Delta-G solvation = -28777.147139 eV Core-core repulsion = 24451.805492 eV Total energy + Delta-G solvation = -4325.341647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.38259 -40.85787 -39.49908 -38.73031 -37.33813 -34.57641 -33.88107 -33.08528 -31.87782 -31.27376 -30.67195 -28.00188 -26.71497 -25.43676 -24.59825 -24.16151 -23.59645 -20.90398 -20.16769 -19.12081 -18.58262 -17.89790 -17.84696 -17.65401 -16.61457 -16.42801 -15.99262 -15.68261 -15.27907 -14.99453 -14.84659 -14.77891 -14.45411 -14.12899 -13.94642 -13.60496 -13.56401 -13.41332 -13.29622 -13.15641 -13.05761 -12.78536 -12.32694 -11.93477 -11.81472 -11.48511 -11.27634 -11.24215 -10.96502 -10.81150 -10.48768 -10.47431 -10.46038 -10.23910 -9.91523 -9.49524 -9.49039 -9.13072 -8.52856 -8.02259 -7.92205 -6.44572 -3.85396 0.13616 0.68770 2.52129 2.92921 3.12921 3.18336 3.24524 3.28673 3.39191 3.85551 3.89140 4.04333 4.21171 4.31460 4.38374 4.57107 4.60040 4.88754 4.92251 5.06750 5.13646 5.18619 5.22371 5.37919 5.41504 5.44557 5.49836 5.58693 5.67654 5.72193 5.84164 5.86001 5.93324 6.08556 6.10810 6.23338 6.28178 6.51767 7.14969 7.17210 7.26888 7.36963 7.52494 8.00092 8.03092 8.58367 9.15317 9.51219 10.02674 10.73017 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.002804 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.562366 B = 9982.899595 C =12373.057515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.062 3.938 3 H 0.090 0.910 4 C 0.131 3.869 5 N -0.705 5.705 6 C 0.565 3.435 7 O -0.543 6.543 8 C -0.198 4.198 9 C 0.010 3.990 10 C -0.203 4.203 11 C 0.329 3.671 12 F -0.108 7.108 13 N -0.513 5.513 14 C 0.181 3.819 15 N -0.512 5.512 16 C 0.015 3.985 17 C 0.044 3.956 18 C 0.442 3.558 19 O -0.578 6.578 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.021 0.979 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -0.683 -20.236 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.047 4.047 3 H 0.108 0.892 4 C 0.007 3.993 5 N -0.357 5.357 6 C 0.351 3.649 7 O -0.422 6.422 8 C -0.204 4.204 9 C -0.016 4.016 10 C -0.224 4.224 11 C 0.176 3.824 12 F -0.087 7.087 13 N -0.227 5.227 14 C 0.023 3.977 15 N -0.236 5.236 16 C -0.132 4.132 17 C -0.087 4.087 18 C 0.228 3.772 19 O -0.462 6.462 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.249 0.751 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.193 0.807 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.039 0.961 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.408 -1.212 -20.122 20.444 hybrid contribution -0.786 0.078 0.766 1.100 sum 2.622 -1.134 -19.356 19.565 Atomic orbital electron populations 1.22400 0.96442 1.02903 1.02786 1.22067 0.93663 0.98708 0.90303 0.89187 1.21456 0.79472 1.01289 0.97088 1.45768 1.08122 1.58627 1.23175 1.17814 0.86074 0.78307 0.82714 1.90777 1.69502 1.48358 1.33556 1.21065 0.95211 1.05771 0.98318 1.21612 0.92321 0.90671 0.96993 1.21826 0.95765 1.05192 0.99637 1.18460 0.78902 0.93962 0.91114 1.91654 1.27713 1.93426 1.95860 1.67071 1.09577 1.17979 1.28028 1.22909 0.87552 0.91875 0.95380 1.61834 1.58919 1.02561 1.00236 1.22610 0.96852 0.89363 1.04390 1.21882 0.98217 0.98412 0.90195 1.19714 0.86758 0.86973 0.83766 1.90489 1.40817 1.30180 1.84724 1.41860 1.41440 1.31148 1.05512 1.19640 1.23536 1.14840 0.84893 0.87958 1.25250 0.97267 0.96294 0.99027 1.69595 1.36565 1.23862 1.24304 0.85935 0.79691 0.78907 0.79808 1.19833 1.20991 1.19931 0.91569 0.91772 0.91862 0.91019 0.90866 0.75074 0.82388 0.82717 0.80720 0.92107 0.88555 0.96085 0.89420 0.93131 0.77533 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 8.50 37.16 0.32 -1.39 16 2 C 0.06 0.63 2.50 -67.71 -0.17 0.46 16 3 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 4 C 0.13 1.34 4.69 -4.04 -0.02 1.32 16 5 N -0.71 -7.57 5.34 -61.28 -0.33 -7.90 16 6 C 0.57 6.68 7.78 -12.38 -0.10 6.58 16 7 O -0.54 -7.83 16.42 5.31 0.09 -7.75 16 8 C -0.20 -2.07 5.89 -104.82 -0.62 -2.69 16 9 C 0.01 0.09 9.71 -38.90 -0.38 -0.29 16 10 C -0.20 -1.66 10.07 -39.42 -0.40 -2.06 16 11 C 0.33 3.57 8.41 -17.23 -0.14 3.42 16 12 F -0.11 -1.19 17.29 2.25 0.04 -1.15 16 13 N -0.51 -6.38 10.36 -13.22 -0.14 -6.52 16 14 C 0.18 1.96 10.71 -17.13 -0.18 1.78 16 15 N -0.51 -7.08 3.93 -236.33 -0.93 -8.01 16 16 C 0.02 0.23 8.46 60.07 0.51 0.73 16 17 C 0.04 0.69 4.89 -4.98 -0.02 0.67 16 18 C 0.44 9.68 7.47 -10.99 -0.08 9.59 16 19 O -0.58 -14.49 13.91 5.55 0.08 -14.41 16 20 N -0.56 -13.60 5.29 -10.97 -0.06 -13.65 16 21 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 22 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 25 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.07 0.64 6.75 -51.93 -0.35 0.29 16 30 H 0.06 0.62 6.39 -51.93 -0.33 0.29 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.80 6.70 -51.93 -0.35 0.46 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.41 4.27 6.20 -40.82 -0.25 4.02 16 35 H 0.16 1.19 7.73 -52.49 -0.41 0.79 16 36 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.18 1.66 6.42 -52.48 -0.34 1.32 16 38 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 39 H 0.10 1.78 5.82 -51.93 -0.30 1.48 16 40 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 41 H 0.09 1.23 8.00 -51.93 -0.42 0.81 16 42 H 0.05 0.74 6.94 -51.93 -0.36 0.38 16 43 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -32.12 370.11 -6.78 -38.90 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.28 Total: 12.07 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.53 Total: 10.42 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.73 Total: -59.37 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.12 -6.78 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717466744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.141 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds