Wall clock time and date at job start Tue Mar 31 2020 20:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21563 * 120.00366 * 359.97438 * 6 5 4 8 8 C 1.47729 * 119.99826 * 179.97438 * 6 5 4 9 9 C 1.40153 * 120.53109 * 179.97438 * 8 6 5 10 10 C 1.38149 * 118.32191 * 179.97438 * 9 8 6 11 11 C 1.38752 * 119.28893 * 0.02562 * 10 9 8 12 12 F 1.35095 * 119.49465 * 179.97438 * 11 10 9 13 13 N 1.32146 * 121.01285 * 359.97417 * 11 10 9 14 14 C 1.31696 * 121.84263 * 359.77299 * 13 11 10 15 15 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 16 16 C 1.46902 * 110.99790 * 58.95192 * 15 2 1 17 17 C 1.46896 * 111.00342 * 295.00322 * 15 2 1 18 18 C 1.50695 * 109.47619 * 189.99958 * 17 15 2 19 19 O 1.21286 * 119.99843 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00467 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00385 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00257 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00040 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99968 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99986 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47186 * 60.00291 * 25 23 21 27 27 H 1.48500 * 109.47234 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47148 * 300.00649 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 33 33 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 34 34 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.83803 * 359.95982 * 9 8 6 36 36 H 1.08000 * 120.35891 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.70726 * 180.26589 * 14 13 11 38 38 H 1.09003 * 109.46808 * 60.00632 * 16 15 2 39 39 H 1.09004 * 109.47176 * 180.02562 * 16 15 2 40 40 H 1.08994 * 109.47263 * 300.00333 * 16 15 2 41 41 H 1.09006 * 109.46837 * 310.00141 * 17 15 2 42 42 H 1.09003 * 109.47200 * 69.99229 * 17 15 2 43 43 H 0.97011 * 119.99567 * 359.97438 * 20 18 17 44 44 H 0.96997 * 120.00137 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5684 -1.8858 -3.1414 8 6 5.6453 -1.5345 -2.1320 9 6 6.3562 -2.1595 -3.1656 10 6 7.7321 -2.2323 -3.0640 11 6 8.3602 -1.6899 -1.9520 12 9 9.7054 -1.7593 -1.8482 13 7 7.6629 -1.1066 -0.9930 14 6 6.3507 -1.0094 -1.0489 15 7 2.0197 -0.6925 1.1993 16 6 1.5283 -2.0761 1.2458 17 6 1.6488 0.0390 2.4180 18 6 2.3680 -0.5572 3.6004 19 8 3.1157 -1.4992 3.4435 20 7 2.1797 -0.0444 4.8325 21 6 2.8336 -0.5872 5.9083 22 1 3.4994 -1.4260 5.7685 23 6 2.6398 -0.0581 7.1785 24 7 1.8293 0.9622 7.3486 25 14 3.5302 -0.7981 8.6443 26 1 4.9970 -0.6988 8.4343 27 1 3.1549 -0.0589 9.8763 28 1 3.1463 -2.2255 8.7877 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6055 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1371 34 1 3.9824 -0.4621 -0.4320 35 1 5.8414 -2.5739 -4.0198 36 1 8.3124 -2.7070 -3.8413 37 1 5.8156 -0.5216 -0.2475 38 1 1.8763 -2.6150 0.3646 39 1 1.9054 -2.5656 2.1438 40 1 0.4386 -2.0742 1.2638 41 1 1.9297 1.0869 2.3125 42 1 0.5723 -0.0346 2.5725 43 1 1.5813 0.7088 4.9581 44 1 1.6937 1.3313 8.2353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717466744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:45 Heat of formation + Delta-G solvation = -86.506775 kcal Electronic energy + Delta-G solvation = -28778.208136 eV Core-core repulsion = 24451.805492 eV Total energy + Delta-G solvation = -4326.402644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.20531 -41.70385 -40.63603 -39.95981 -38.68998 -35.97500 -35.39085 -33.88116 -33.24087 -32.74866 -31.57973 -29.33851 -27.56830 -26.98617 -25.59251 -25.23558 -24.61082 -21.78248 -21.34950 -20.64900 -19.77352 -19.38751 -18.74308 -18.49988 -17.88692 -17.28214 -17.04148 -16.82219 -16.56151 -16.25083 -15.99973 -15.98672 -15.70892 -15.44243 -15.03313 -14.82824 -14.65553 -14.31169 -14.23467 -14.13700 -14.02232 -13.75722 -13.61220 -13.41001 -13.05995 -12.86587 -12.78009 -12.42087 -12.35891 -12.23714 -12.11783 -11.73776 -11.40728 -11.38103 -11.24439 -10.78319 -10.32621 -10.22546 -9.98969 -9.95212 -9.15748 -8.43531 -5.90995 -0.67344 -0.04846 1.40643 1.42690 1.52640 1.64402 2.07736 2.12345 2.30157 2.35031 2.56940 2.79035 3.24434 3.28214 3.47964 3.55922 3.65393 3.75676 3.82490 4.10655 4.17007 4.29742 4.33731 4.39248 4.47990 4.57705 4.61598 4.66416 4.69748 4.71748 4.78687 4.88643 4.89855 5.05468 5.23432 5.32575 5.35653 5.42741 5.44399 5.90744 6.09431 6.22969 6.36739 6.48150 6.65469 7.10084 7.17881 7.62994 8.19142 8.73679 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009971 B = 0.002804 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.562366 B = 9982.899595 C =12373.057515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.068 3.932 3 H 0.107 0.893 4 C 0.132 3.868 5 N -0.702 5.702 6 C 0.567 3.433 7 O -0.571 6.571 8 C -0.203 4.203 9 C 0.013 3.987 10 C -0.182 4.182 11 C 0.311 3.689 12 F -0.113 7.113 13 N -0.546 5.546 14 C 0.176 3.824 15 N -0.522 5.522 16 C 0.025 3.975 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.577 5.577 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.987 3.013 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.414 0.586 35 H 0.175 0.825 36 H 0.190 0.810 37 H 0.180 0.820 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.395 0.605 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.886 -0.151 -21.691 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.040 4.040 3 H 0.125 0.875 4 C 0.008 3.992 5 N -0.352 5.352 6 C 0.353 3.647 7 O -0.452 6.452 8 C -0.209 4.209 9 C -0.013 4.013 10 C -0.202 4.202 11 C 0.159 3.841 12 F -0.092 7.092 13 N -0.260 5.260 14 C 0.017 3.983 15 N -0.246 5.246 16 C -0.123 4.123 17 C -0.073 4.073 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.811 3.189 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.251 0.749 35 H 0.193 0.807 36 H 0.208 0.792 37 H 0.197 0.803 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.229 0.771 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.899 -0.659 -21.583 21.786 hybrid contribution -0.622 -0.119 1.114 1.281 sum 2.277 -0.777 -20.468 20.609 Atomic orbital electron populations 1.22367 0.95095 1.02884 1.03812 1.22129 0.94667 0.98964 0.88242 0.87465 1.21506 0.78992 1.01044 0.97609 1.45808 1.08497 1.58044 1.22898 1.17950 0.86491 0.77832 0.82390 1.90760 1.70100 1.49724 1.34594 1.21047 0.94574 1.06365 0.98871 1.21872 0.92595 0.89933 0.96909 1.22099 0.95535 1.03495 0.99107 1.18764 0.78793 0.94704 0.91866 1.91637 1.28085 1.93540 1.95955 1.66987 1.10344 1.19268 1.29434 1.22947 0.87206 0.92277 0.95826 1.61755 1.59810 1.02281 1.00776 1.22407 0.97557 0.89802 1.02541 1.21739 0.98185 0.99148 0.88230 1.20836 0.85694 0.85857 0.84603 1.90477 1.42224 1.31640 1.85471 1.41933 1.41963 1.31674 1.05879 1.19581 1.24515 1.15147 0.86610 0.90402 1.25945 0.97791 0.96572 1.00877 1.69652 1.37170 1.24434 1.25017 0.85073 0.78462 0.78207 0.77131 1.19836 1.19671 1.19868 0.91695 0.92320 0.89695 0.91945 0.89372 0.74866 0.80723 0.79235 0.80293 0.91300 0.92854 0.94621 0.86850 0.91345 0.77101 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.50 71.98 0.61 -2.16 16 2 C 0.07 1.22 2.50 44.92 0.11 1.33 16 3 H 0.11 1.62 8.03 -2.39 -0.02 1.60 16 4 C 0.13 2.42 4.69 86.38 0.40 2.83 16 5 N -0.70 -14.18 5.34 -466.08 -2.49 -16.67 16 6 C 0.57 12.81 7.78 86.75 0.67 13.49 16 7 O -0.57 -15.77 16.42 -3.91 -0.06 -15.83 16 8 C -0.20 -4.07 5.89 -20.00 -0.12 -4.19 16 9 C 0.01 0.20 9.71 22.71 0.22 0.42 16 10 C -0.18 -2.60 10.07 22.37 0.23 -2.38 16 11 C 0.31 6.53 8.41 84.77 0.71 7.25 16 12 F -0.11 -2.45 17.29 44.97 0.78 -1.67 16 13 N -0.55 -13.61 10.36 -195.72 -2.03 -15.64 16 14 C 0.18 3.78 10.71 85.02 0.91 4.69 16 15 N -0.52 -13.68 3.93 -901.63 -3.54 -17.22 16 16 C 0.02 0.72 8.46 127.69 1.08 1.79 16 17 C 0.06 1.73 4.89 85.56 0.42 2.15 16 18 C 0.44 19.52 7.47 87.66 0.66 20.17 16 19 O -0.61 -31.57 13.91 -3.05 -0.04 -31.62 16 20 N -0.58 -28.27 5.29 -306.99 -1.62 -29.90 16 21 C -0.33 -18.21 9.68 84.04 0.81 -17.39 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 25 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 29 H 0.06 1.03 6.75 -2.39 -0.02 1.02 16 30 H 0.06 0.97 6.39 -2.39 -0.02 0.96 16 31 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.29 6.70 -2.39 -0.02 1.28 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 8.18 6.20 -92.71 -0.57 7.61 16 35 H 0.18 2.22 7.73 -2.91 -0.02 2.20 16 36 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.18 3.46 6.42 -2.91 -0.02 3.44 16 38 H 0.07 1.84 6.44 -2.39 -0.02 1.82 16 39 H 0.05 2.02 5.82 -2.38 -0.01 2.01 16 40 H 0.04 0.90 6.28 -2.39 -0.02 0.89 16 41 H 0.11 2.86 8.00 -2.38 -0.02 2.84 16 42 H 0.07 1.85 6.94 -2.39 -0.02 1.83 16 43 H 0.40 18.42 7.90 -92.70 -0.73 17.69 16 44 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -70.97 370.11 0.26 -70.71 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.23 Total: 34.05 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 7.19 Total: 27.83 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -9.40 Total: -128.13 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.11 Total: -47.45 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.78 Total: -1.67 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -70.97 0.26 -70.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717466744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.793 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds