Wall clock time and date at job start Tue Mar 31 2020 20:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47830 * 2 1 4 4 N 1.46499 * 109.47259 * 239.99385 * 2 1 3 5 5 C 1.34782 * 119.99474 * 84.99846 * 4 2 1 6 6 O 1.21281 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99568 * 180.02562 * 5 4 2 8 8 C 1.54634 * 111.03997 * 292.02623 * 7 5 4 9 9 C 1.51101 * 104.72374 * 217.33486 * 8 7 5 10 10 C 1.30518 * 111.10667 * 16.44037 * 9 8 7 11 11 C 1.51107 * 111.10507 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46964 * 120.00143 * 2 1 3 13 13 C 1.53501 * 114.20620 * 299.99385 * 12 2 1 14 14 N 1.47065 * 87.98741 * 220.15007 * 13 12 2 15 15 C 1.34775 * 136.05752 * 207.08848 * 14 13 12 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47048 * 119.99960 * 23 21 19 26 26 H 1.48504 * 109.47465 * 240.00413 * 23 21 19 27 27 C 1.47067 * 87.88377 * 27.34414 * 14 13 12 28 28 H 1.08992 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46620 * 300.00064 * 1 2 3 30 30 H 1.08999 * 109.46733 * 60.00011 * 1 2 3 31 31 H 0.96999 * 120.00320 * 265.00946 * 4 2 1 32 32 H 1.09001 * 110.91695 * 56.04239 * 7 5 4 33 33 H 1.08994 * 110.38670 * 336.15196 * 8 7 5 34 34 H 1.09003 * 110.38307 * 98.52577 * 8 7 5 35 35 H 1.08000 * 124.44775 * 196.45714 * 9 8 7 36 36 H 1.08004 * 124.45343 * 180.02562 * 10 9 8 37 37 H 1.09005 * 110.38738 * 224.74976 * 11 10 9 38 38 H 1.09005 * 110.38349 * 102.37715 * 11 10 9 39 39 H 1.09001 * 113.28594 * 73.06134 * 12 2 1 40 40 H 1.09001 * 113.46643 * 105.36708 * 13 12 2 41 41 H 1.09004 * 113.51834 * 334.94152 * 13 12 2 42 42 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 43 43 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 44 44 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.47005 * 87.43764 * 27 14 13 46 46 H 1.09003 * 113.46723 * 217.87945 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6489 -0.7290 -3.5877 8 6 4.1349 -1.1272 -3.4316 9 6 4.7338 -0.9210 -4.8034 10 6 3.9598 -0.1790 -5.5475 11 6 2.7151 0.2331 -4.7963 12 6 2.0400 -0.7213 1.2493 13 6 1.5899 -0.0846 2.5715 14 7 2.9375 -0.3491 3.0976 15 6 3.4800 -0.5643 4.3125 16 8 2.7759 -0.5626 5.2999 17 6 4.9616 -0.8061 4.4439 18 16 5.3794 -1.0588 6.1868 19 6 7.1178 -1.3119 6.0512 20 1 7.5942 -1.2801 5.0825 21 6 7.8760 -1.5458 7.1900 22 7 7.2963 -1.5791 8.3713 23 14 9.7189 -1.8148 7.0462 24 1 10.1218 -1.7294 5.6194 25 1 10.4336 -0.7719 7.8251 26 1 10.0665 -3.1564 7.5797 27 6 3.4336 -0.2689 1.7155 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6319 -1.1525 32 1 2.0318 -1.5986 -3.8137 33 1 4.6259 -0.4833 -2.7021 34 1 4.2186 -2.1725 -3.1339 35 1 5.6783 -1.3338 -5.1260 36 1 4.1795 0.1029 -6.5667 37 1 1.8339 0.1130 -5.4266 38 1 2.8015 1.2648 -4.4554 39 1 1.9086 -1.8025 1.2064 40 1 0.8071 -0.6474 3.0800 41 1 1.3578 0.9770 2.4862 42 1 5.5060 0.0574 4.0617 43 1 5.2374 -1.6919 3.8717 44 1 7.8261 -1.7430 9.1672 45 1 3.6879 0.7441 1.4036 46 1 4.2217 -0.9889 1.4947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718266358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:44 Heat of formation + Delta-G solvation = -21.591809 kcal Electronic energy + Delta-G solvation = -26038.886548 eV Core-core repulsion = 22249.219253 eV Total energy + Delta-G solvation = -3789.667295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97108 -40.20120 -38.23980 -37.57760 -35.41564 -32.45330 -31.96709 -30.28680 -29.43545 -28.56432 -27.94985 -26.01224 -25.45189 -24.32651 -22.48077 -20.98221 -20.13649 -19.23170 -19.08296 -17.84689 -17.62945 -16.90723 -16.63172 -16.51334 -15.67912 -15.44438 -14.94565 -14.82585 -14.80395 -14.19639 -14.02660 -13.69553 -13.29693 -13.21716 -12.90278 -12.86632 -12.76228 -12.59367 -12.51610 -12.51259 -12.22122 -11.95657 -11.87099 -11.68540 -11.58927 -11.21390 -11.08839 -11.04233 -10.83848 -10.77754 -10.13506 -9.83564 -9.58402 -9.36064 -9.31435 -9.09712 -8.65015 -8.26319 -6.53217 -6.23942 -3.94957 1.82873 2.25834 2.66413 2.75441 3.02478 3.19971 3.22987 3.29168 3.53367 3.89921 4.01069 4.12806 4.17791 4.34551 4.44523 4.58177 4.70907 4.74691 4.82903 4.93164 5.00508 5.10074 5.11473 5.11562 5.20196 5.24924 5.30525 5.31124 5.35699 5.41259 5.45478 5.53108 5.55361 5.60318 5.71899 5.79029 5.86134 5.89453 5.99040 6.08125 6.11058 6.14232 6.42829 7.09960 7.57632 7.81231 7.84958 8.33167 8.50229 9.21353 10.83551 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.002173 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.339750 B =12885.240876 C =14819.155270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.094 0.906 4 N -0.723 5.723 5 C 0.525 3.475 6 O -0.536 6.536 7 C -0.118 4.118 8 C -0.089 4.089 9 C -0.170 4.170 10 C -0.163 4.163 11 C -0.088 4.088 12 C -0.137 4.137 13 C 0.117 3.883 14 N -0.654 5.654 15 C 0.563 3.437 16 O -0.513 6.513 17 C -0.144 4.144 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.920 3.080 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.279 1.279 27 C 0.107 3.893 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.402 0.598 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.084 0.916 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -0.007 -28.457 30.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.112 0.888 4 N -0.375 5.375 5 C 0.312 3.688 6 O -0.413 6.413 7 C -0.139 4.139 8 C -0.127 4.127 9 C -0.188 4.188 10 C -0.181 4.181 11 C -0.126 4.126 12 C -0.156 4.156 13 C -0.007 4.007 14 N -0.392 5.392 15 C 0.352 3.648 16 O -0.387 6.387 17 C -0.295 4.295 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.016 4.016 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.143 0.791 -26.551 29.207 hybrid contribution 2.210 -0.655 -1.249 2.621 sum -9.934 0.137 -27.800 29.522 Atomic orbital electron populations 1.22161 0.94607 1.02488 1.02907 1.20890 0.94463 0.97235 0.82476 0.88797 1.46072 1.67627 1.14201 1.09570 1.20382 0.76990 0.87163 0.84315 1.90707 1.49705 1.15990 1.84856 1.22194 0.98076 0.99901 0.93735 1.21321 0.92317 1.02214 0.96818 1.23218 1.00001 1.00343 0.95216 1.23320 0.96646 0.98641 0.99459 1.21298 0.96877 1.00436 0.93946 1.23369 0.97247 1.01428 0.93574 1.22805 0.87341 1.00574 0.89979 1.49618 1.10663 1.73105 1.05841 1.19942 0.89643 0.75130 0.80054 1.90719 1.62745 1.49853 1.35365 1.23466 0.93198 1.04567 1.08220 1.85415 1.08340 1.93186 0.96451 1.22888 0.92488 1.56697 0.96188 0.90882 1.25002 0.99504 0.94663 0.94464 1.70026 1.36178 1.46056 0.97978 0.86103 0.82939 0.78032 0.78335 1.19614 1.20541 1.20531 1.23063 0.96633 1.01723 0.80214 0.92180 0.91148 0.91924 0.76386 0.87668 0.90043 0.90217 0.85485 0.85561 0.90759 0.88663 0.87113 0.90091 0.89816 0.89339 0.89333 0.92200 0.89746 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.29 37.16 0.35 -0.71 16 2 C 0.15 1.04 2.48 -67.93 -0.17 0.88 16 3 H 0.09 0.80 7.34 -51.93 -0.38 0.42 16 4 N -0.72 -4.23 5.08 -53.80 -0.27 -4.50 16 5 C 0.53 4.18 7.03 -10.98 -0.08 4.10 16 6 O -0.54 -6.37 15.17 5.56 0.08 -6.29 16 7 C -0.12 -0.69 3.54 -90.06 -0.32 -1.01 16 8 C -0.09 -0.48 6.37 -26.83 -0.17 -0.65 16 9 C -0.17 -1.00 10.77 -35.69 -0.38 -1.38 16 10 C -0.16 -0.99 10.77 -35.69 -0.38 -1.38 16 11 C -0.09 -0.60 6.18 -26.83 -0.17 -0.77 16 12 C -0.14 -0.99 3.66 -89.96 -0.33 -1.32 16 13 C 0.12 1.19 7.26 -8.51 -0.06 1.13 16 14 N -0.65 -9.15 3.69 -185.05 -0.68 -9.83 16 15 C 0.56 10.97 8.10 -10.99 -0.09 10.88 16 16 O -0.51 -12.11 16.64 5.56 0.09 -12.02 16 17 C -0.14 -2.98 5.98 36.00 0.22 -2.77 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.11 1.02 8.00 -8.37 -0.07 0.95 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.43 7.49 -51.93 -0.39 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.40 1.42 8.60 -40.82 -0.35 1.07 16 32 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.84 6.96 -51.93 -0.36 0.48 16 39 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.08 0.75 7.94 -51.93 -0.41 0.34 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -36.87 397.64 -10.09 -46.96 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.34 Total: -2.34 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.46 Total: -5.02 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: -0.22 Total: -39.76 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.18 Total: -18.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.87 -10.09 -46.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718266358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.372 kcal (2) G-P(sol) polarization free energy of solvation -36.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds