Wall clock time and date at job start Tue Mar 31 2020 20:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47830 * 2 1 4 4 N 1.46499 * 109.47259 * 239.99385 * 2 1 3 5 5 C 1.34782 * 119.99474 * 84.99846 * 4 2 1 6 6 O 1.21281 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99568 * 180.02562 * 5 4 2 8 8 C 1.54634 * 111.03997 * 292.02623 * 7 5 4 9 9 C 1.51101 * 104.72374 * 217.33486 * 8 7 5 10 10 C 1.30518 * 111.10667 * 16.44037 * 9 8 7 11 11 C 1.51107 * 111.10507 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46964 * 120.00143 * 2 1 3 13 13 C 1.53501 * 114.20620 * 299.99385 * 12 2 1 14 14 N 1.47065 * 87.98741 * 220.15007 * 13 12 2 15 15 C 1.34775 * 136.05752 * 207.08848 * 14 13 12 16 16 O 1.21276 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31626 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47048 * 119.99960 * 23 21 19 26 26 H 1.48504 * 109.47465 * 240.00413 * 23 21 19 27 27 C 1.47067 * 87.88377 * 27.34414 * 14 13 12 28 28 H 1.08992 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46620 * 300.00064 * 1 2 3 30 30 H 1.08999 * 109.46733 * 60.00011 * 1 2 3 31 31 H 0.96999 * 120.00320 * 265.00946 * 4 2 1 32 32 H 1.09001 * 110.91695 * 56.04239 * 7 5 4 33 33 H 1.08994 * 110.38670 * 336.15196 * 8 7 5 34 34 H 1.09003 * 110.38307 * 98.52577 * 8 7 5 35 35 H 1.08000 * 124.44775 * 196.45714 * 9 8 7 36 36 H 1.08004 * 124.45343 * 180.02562 * 10 9 8 37 37 H 1.09005 * 110.38738 * 224.74976 * 11 10 9 38 38 H 1.09005 * 110.38349 * 102.37715 * 11 10 9 39 39 H 1.09001 * 113.28594 * 73.06134 * 12 2 1 40 40 H 1.09001 * 113.46643 * 105.36708 * 13 12 2 41 41 H 1.09004 * 113.51834 * 334.94152 * 13 12 2 42 42 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 43 43 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 44 44 H 0.97004 * 120.00604 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.47005 * 87.43764 * 27 14 13 46 46 H 1.09003 * 113.46723 * 217.87945 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6489 -0.7290 -3.5877 8 6 4.1349 -1.1272 -3.4316 9 6 4.7338 -0.9210 -4.8034 10 6 3.9598 -0.1790 -5.5475 11 6 2.7151 0.2331 -4.7963 12 6 2.0400 -0.7213 1.2493 13 6 1.5899 -0.0846 2.5715 14 7 2.9375 -0.3491 3.0976 15 6 3.4800 -0.5643 4.3125 16 8 2.7759 -0.5626 5.2999 17 6 4.9616 -0.8061 4.4439 18 16 5.3794 -1.0588 6.1868 19 6 7.1178 -1.3119 6.0512 20 1 7.5942 -1.2801 5.0825 21 6 7.8760 -1.5458 7.1900 22 7 7.2963 -1.5791 8.3713 23 14 9.7189 -1.8148 7.0462 24 1 10.1218 -1.7294 5.6194 25 1 10.4336 -0.7719 7.8251 26 1 10.0665 -3.1564 7.5797 27 6 3.4336 -0.2689 1.7155 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6319 -1.1525 32 1 2.0318 -1.5986 -3.8137 33 1 4.6259 -0.4833 -2.7021 34 1 4.2186 -2.1725 -3.1339 35 1 5.6783 -1.3338 -5.1260 36 1 4.1795 0.1029 -6.5667 37 1 1.8339 0.1130 -5.4266 38 1 2.8015 1.2648 -4.4554 39 1 1.9086 -1.8025 1.2064 40 1 0.8071 -0.6474 3.0800 41 1 1.3578 0.9770 2.4862 42 1 5.5060 0.0574 4.0617 43 1 5.2374 -1.6919 3.8717 44 1 7.8261 -1.7430 9.1672 45 1 3.6879 0.7441 1.4036 46 1 4.2217 -0.9889 1.4947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718266358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:43 Heat of formation + Delta-G solvation = -46.624493 kcal Electronic energy + Delta-G solvation = -26039.972047 eV Core-core repulsion = 22249.219253 eV Total energy + Delta-G solvation = -3790.752793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77682 -41.01436 -39.27222 -38.43320 -36.17278 -34.60598 -32.79084 -31.51060 -30.03949 -29.05704 -28.98587 -27.70092 -26.81861 -25.04862 -23.16463 -21.64668 -20.87876 -20.28295 -19.67022 -19.53196 -18.38471 -17.96912 -17.55309 -17.00912 -16.92333 -16.82750 -16.63975 -15.88897 -15.78872 -15.50784 -14.93774 -14.73822 -14.60643 -14.13599 -13.79105 -13.76312 -13.63304 -13.41907 -13.33607 -13.21098 -13.11962 -13.01258 -12.92244 -12.76691 -12.60736 -12.54834 -12.14610 -12.03013 -11.86259 -11.73302 -11.62882 -11.17520 -10.99994 -10.77452 -10.31313 -10.07238 -9.80573 -9.76937 -8.70644 -8.36489 -6.15634 1.18909 1.38918 1.41009 1.41846 1.52022 1.56072 1.65875 1.95356 2.16579 2.25400 2.97758 3.13459 3.22936 3.52851 3.60805 3.68448 3.70922 3.96049 4.05248 4.12997 4.22075 4.29216 4.37986 4.40927 4.42704 4.46278 4.49710 4.56447 4.65077 4.66789 4.80914 4.81497 4.84919 4.87301 4.95955 5.01761 5.11480 5.19215 5.22730 5.35094 5.40085 5.56211 5.66480 6.00124 6.18213 6.56988 6.60529 7.04601 7.06747 7.30242 8.73081 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.002173 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.339750 B =12885.240876 C =14819.155270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.079 0.921 4 N -0.709 5.709 5 C 0.524 3.476 6 O -0.581 6.581 7 C -0.112 4.112 8 C -0.088 4.088 9 C -0.172 4.172 10 C -0.174 4.174 11 C -0.093 4.093 12 C -0.104 4.104 13 C 0.108 3.892 14 N -0.653 5.653 15 C 0.560 3.440 16 O -0.568 6.568 17 C -0.118 4.118 18 S -0.151 6.151 19 C -0.544 4.544 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.272 1.272 27 C 0.101 3.899 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.417 0.583 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.272 0.728 45 H 0.095 0.905 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 -1.327 -31.120 32.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.097 0.903 4 N -0.361 5.361 5 C 0.312 3.688 6 O -0.461 6.461 7 C -0.133 4.133 8 C -0.125 4.125 9 C -0.190 4.190 10 C -0.192 4.192 11 C -0.130 4.130 12 C -0.124 4.124 13 C -0.015 4.015 14 N -0.389 5.389 15 C 0.349 3.651 16 O -0.447 6.447 17 C -0.269 4.269 18 S 0.076 5.924 19 C -0.692 4.692 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.021 4.021 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.254 0.746 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.185 -0.552 -29.286 31.354 hybrid contribution 1.792 -0.188 -0.567 1.889 sum -9.393 -0.740 -29.853 31.305 Atomic orbital electron populations 1.22127 0.94085 1.03227 1.02405 1.20721 0.94723 0.96465 0.82476 0.90330 1.45934 1.66708 1.14828 1.08666 1.20741 0.76251 0.86636 0.85179 1.90698 1.51762 1.18030 1.85565 1.22212 0.98894 1.00045 0.92164 1.21352 0.91504 1.03316 0.96370 1.23448 1.00306 0.99909 0.95311 1.23431 0.96530 0.99117 1.00122 1.21292 0.97676 0.99354 0.94698 1.23162 0.94907 1.02249 0.92043 1.23140 0.85529 1.01813 0.90976 1.49575 1.13065 1.70618 1.05662 1.19623 0.88825 0.75469 0.81173 1.90691 1.63511 1.52825 1.37689 1.23253 0.94814 1.05940 1.02870 1.85602 1.09489 1.93620 1.03711 1.23204 0.92459 1.56710 0.96854 0.89925 1.26161 1.05240 0.93970 0.93874 1.70189 1.38445 1.47137 0.98994 0.84875 0.75685 0.78083 0.79106 1.17950 1.19984 1.19774 1.23425 0.98415 1.03065 0.77163 0.90796 0.90769 0.93393 0.74561 0.85302 0.91030 0.87946 0.84294 0.84676 0.90290 0.91270 0.85108 0.90244 0.88579 0.87955 0.87383 0.91937 0.88699 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.29 71.98 0.67 -1.06 16 2 C 0.16 1.78 2.48 44.99 0.11 1.89 16 3 H 0.08 1.20 7.34 -2.39 -0.02 1.18 16 4 N -0.71 -6.29 5.08 -442.52 -2.25 -8.54 16 5 C 0.52 7.47 7.03 87.66 0.62 8.09 16 6 O -0.58 -13.64 15.17 -3.03 -0.05 -13.69 16 7 C -0.11 -1.08 3.54 -10.43 -0.04 -1.12 16 8 C -0.09 -0.72 6.37 30.53 0.19 -0.53 16 9 C -0.17 -1.65 10.77 26.27 0.28 -1.36 16 10 C -0.17 -1.89 10.77 26.27 0.28 -1.61 16 11 C -0.09 -1.20 6.18 30.53 0.19 -1.01 16 12 C -0.10 -1.17 3.66 -10.37 -0.04 -1.21 16 13 C 0.11 1.98 7.26 83.18 0.60 2.59 16 14 N -0.65 -17.16 3.69 -857.77 -3.16 -20.32 16 15 C 0.56 21.69 8.10 87.66 0.71 22.40 16 16 O -0.57 -27.59 16.64 -3.02 -0.05 -27.64 16 17 C -0.12 -4.81 5.98 71.24 0.43 -4.39 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 19 C -0.54 -31.17 9.50 67.95 0.65 -30.52 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -56.07 13.22 21.65 0.29 -55.78 16 23 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 C 0.10 1.62 8.00 83.26 0.67 2.28 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.75 7.49 -2.38 -0.02 0.74 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.42 1.28 8.60 -92.71 -0.80 0.48 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.75 7.88 -2.39 -0.02 0.73 16 34 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 1.27 6.96 -2.38 -0.02 1.25 16 39 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.58 8.11 -2.39 -0.02 1.56 16 42 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.09 1.41 7.94 -2.39 -0.02 1.39 16 46 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -84.23 397.64 1.61 -82.62 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.18 Total: 11.98 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.79 Total: -4.40 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -5.12 Total: -84.64 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.10 Total: -41.32 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -84.23 1.61 -82.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718266358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.994 kcal (2) G-P(sol) polarization free energy of solvation -84.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds