Wall clock time and date at job start Tue Mar 31 2020 20:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47686 * 2 1 4 4 N 1.46503 * 109.47109 * 239.99707 * 2 1 3 5 5 C 1.34777 * 119.99885 * 85.00120 * 4 2 1 6 6 O 1.21617 * 120.00049 * 359.97438 * 5 4 2 7 7 C 1.47100 * 119.99940 * 180.02562 * 5 4 2 8 8 C 1.32995 * 120.00215 * 179.97438 * 7 5 4 9 9 C 1.51400 * 136.31414 * 359.63003 * 8 7 5 10 10 C 1.53373 * 87.52129 * 206.05772 * 9 8 7 11 11 C 1.51402 * 136.31937 * 180.02562 * 8 7 5 12 12 C 1.52998 * 109.47322 * 120.00044 * 2 1 3 13 13 C 1.53502 * 114.20839 * 185.05483 * 12 2 1 14 14 N 1.47071 * 87.98585 * 139.64965 * 13 12 2 15 15 C 1.34778 * 136.05678 * 152.83907 * 14 13 12 16 16 O 1.21278 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.50692 * 119.99955 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47280 * 180.02562 * 17 15 14 19 19 C 1.76189 * 100.00418 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00315 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00145 * 179.72614 * 19 18 17 22 22 N 1.31626 * 120.00090 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99920 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47096 * 59.99892 * 23 21 19 25 25 H 1.48503 * 109.46637 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47145 * 299.99918 * 23 21 19 27 27 C 1.47065 * 87.88508 * 333.10273 * 14 13 12 28 28 H 1.08999 * 109.47384 * 59.12787 * 1 2 3 29 29 H 1.08998 * 109.47260 * 179.13615 * 1 2 3 30 30 H 1.09001 * 109.47018 * 299.13007 * 1 2 3 31 31 H 0.96999 * 120.00004 * 265.00140 * 4 2 1 32 32 H 1.08005 * 119.99965 * 0.02562 * 7 5 4 33 33 H 1.09000 * 113.56373 * 320.63957 * 9 8 7 34 34 H 1.08999 * 113.56267 * 91.37293 * 9 8 7 35 35 H 1.08997 * 113.97138 * 220.29535 * 10 9 8 36 36 H 1.09003 * 113.59861 * 88.79290 * 10 9 8 37 37 H 1.09006 * 113.56029 * 268.62555 * 11 8 7 38 38 H 1.08996 * 113.56502 * 39.35052 * 11 8 7 39 39 H 1.09001 * 113.28611 * 51.98324 * 12 2 1 40 40 H 1.09004 * 113.46779 * 24.87343 * 13 12 2 41 41 H 1.08993 * 113.52153 * 254.44209 * 13 12 2 42 42 H 1.08996 * 109.47485 * 60.00315 * 17 15 14 43 43 H 1.09001 * 109.47519 * 300.00026 * 17 15 14 44 44 H 0.96994 * 120.00111 * 179.97438 * 22 21 19 45 45 H 1.08996 * 113.46772 * 141.67623 * 27 14 13 46 46 H 1.09002 * 113.46418 * 272.11391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8573 1.1615 -2.4119 7 6 2.6368 -0.7120 -3.5583 8 6 2.7633 -0.0487 -4.7041 9 6 2.5166 1.3661 -5.1832 10 6 2.3211 0.7851 -6.5890 11 6 3.2117 -0.3732 -6.1133 12 6 2.0400 -0.7212 1.2492 13 6 3.5646 -0.6787 1.4222 14 7 3.3434 -0.4661 2.8606 15 6 4.0248 -0.7207 3.9952 16 8 5.1100 -1.2595 3.9429 17 6 3.4381 -0.3359 5.3288 18 16 4.5831 -0.8050 6.6498 19 6 3.6725 -0.2546 8.0541 20 1 2.7074 0.2121 7.9229 21 6 4.1930 -0.4255 9.3294 22 7 5.3667 -0.9992 9.4897 23 14 3.2270 0.1573 10.8183 24 1 1.9202 -0.5462 10.8669 25 1 3.9951 -0.1401 12.0539 26 1 2.9978 1.6210 10.7176 27 6 2.0487 0.1406 2.5163 28 1 -0.3634 0.5273 -0.8820 29 1 -0.3634 -1.0275 -0.0155 30 1 -0.3633 0.5003 0.8977 31 1 2.2489 -1.6318 -1.1526 32 1 2.8928 -1.7601 -3.5100 33 1 1.6135 1.8150 -4.7695 34 1 3.3890 2.0138 -5.0968 35 1 2.7661 1.3857 -7.3823 36 1 1.2930 0.4914 -6.8007 37 1 4.2750 -0.2030 -6.2823 38 1 2.8787 -1.3506 -6.4624 39 1 1.6022 -1.7103 1.3847 40 1 4.0344 0.1701 0.9252 41 1 4.0549 -1.6249 1.1936 42 1 2.4885 -0.8518 5.4706 43 1 3.2739 0.7413 5.3564 44 1 5.7306 -1.1183 10.3809 45 1 1.2518 -0.1110 3.2160 46 1 2.1106 1.2098 2.3137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718267867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:55 Heat of formation + Delta-G solvation = 3.264951 kcal Electronic energy + Delta-G solvation = -25556.306866 eV Core-core repulsion = 21767.717441 eV Total energy + Delta-G solvation = -3788.589425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80928 -39.92999 -38.73302 -37.67681 -35.30770 -32.43791 -32.14314 -30.73316 -29.99213 -27.79057 -26.22627 -26.10656 -25.48369 -24.47093 -23.12387 -21.09555 -20.89736 -19.07442 -18.64259 -17.71947 -17.33705 -16.79665 -16.56622 -15.96627 -15.59511 -15.39442 -15.24804 -14.81199 -14.75153 -14.40181 -14.19083 -13.94838 -13.85019 -12.93152 -12.89636 -12.81512 -12.67036 -12.60895 -12.50960 -12.35272 -12.17229 -11.99114 -11.81571 -11.46339 -11.23500 -11.05921 -11.04164 -10.97381 -10.80796 -10.76757 -9.98631 -9.83909 -9.67519 -9.46823 -9.27650 -9.06671 -8.62527 -8.25560 -6.51675 -6.22104 -3.93290 0.98463 2.73097 2.77594 3.01510 3.04002 3.23239 3.24027 3.28586 3.55072 3.85628 4.02904 4.11309 4.19728 4.29206 4.37603 4.59236 4.64919 4.74892 4.79191 4.89022 5.05496 5.07868 5.12958 5.17295 5.20196 5.23562 5.29090 5.32583 5.36425 5.40686 5.46319 5.50245 5.56500 5.63409 5.75947 5.80264 5.82713 5.88399 5.97819 6.00906 6.13171 6.17051 6.21047 7.23280 7.58603 7.83575 7.97462 8.34361 8.52085 9.22893 10.85307 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.001666 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.511037 B =16801.244494 C =17295.105012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.157 3.843 3 H 0.093 0.907 4 N -0.722 5.722 5 C 0.553 3.447 6 O -0.542 6.542 7 C -0.203 4.203 8 C -0.059 4.059 9 C -0.106 4.106 10 C -0.143 4.143 11 C -0.110 4.110 12 C -0.139 4.139 13 C 0.113 3.887 14 N -0.653 5.653 15 C 0.562 3.438 16 O -0.514 6.514 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.274 1.274 27 C 0.113 3.887 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.083 0.917 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 0.945 -31.134 32.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.111 0.889 4 N -0.373 5.373 5 C 0.342 3.658 6 O -0.420 6.420 7 C -0.223 4.223 8 C -0.061 4.061 9 C -0.143 4.143 10 C -0.181 4.181 11 C -0.146 4.146 12 C -0.158 4.158 13 C -0.010 4.010 14 N -0.392 5.392 15 C 0.352 3.648 16 O -0.388 6.388 17 C -0.295 4.295 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.011 4.011 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.236 0.764 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.882 0.883 -30.862 32.126 hybrid contribution -1.765 0.419 1.126 2.135 sum -10.647 1.302 -29.735 31.611 Atomic orbital electron populations 1.22152 0.94661 1.02387 1.02829 1.20851 0.94374 0.97183 0.82445 0.88852 1.45913 1.67741 1.14144 1.09509 1.18410 0.77481 0.86591 0.83324 1.90782 1.50434 1.15728 1.85102 1.21580 1.08638 1.00696 0.91421 1.23502 0.91249 0.98111 0.93270 1.22230 1.03521 0.94167 0.94383 1.22734 1.00318 0.97784 0.97239 1.22367 1.00820 0.99908 0.91555 1.23312 0.96991 1.01121 0.94422 1.22852 0.94914 1.02233 0.81038 1.49607 1.21771 1.62428 1.05410 1.19944 0.83895 0.77544 0.83385 1.90716 1.20173 1.41768 1.86112 1.23472 1.05395 1.04558 0.96080 1.85400 1.24202 1.79329 0.94415 1.22819 1.07240 1.46143 0.92271 0.90952 1.24989 0.95212 0.94782 0.98521 1.70004 1.16545 1.40242 1.23475 0.86218 0.79555 0.79190 0.80503 1.19931 1.20778 1.19915 1.22839 0.86464 0.97856 0.93924 0.91965 0.92274 0.91203 0.76419 0.84962 0.89493 0.88348 0.90329 0.89745 0.88008 0.90345 0.87076 0.90088 0.90453 0.89276 0.89281 0.92102 0.89847 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.47 37.15 0.35 -0.75 16 2 C 0.16 1.15 2.34 -67.93 -0.16 0.99 16 3 H 0.09 0.84 7.44 -51.93 -0.39 0.46 16 4 N -0.72 -4.96 4.95 -54.99 -0.27 -5.23 16 5 C 0.55 5.04 7.73 -12.67 -0.10 4.95 16 6 O -0.54 -6.78 14.81 5.26 0.08 -6.71 16 7 C -0.20 -1.44 10.03 -37.81 -0.38 -1.82 16 8 C -0.06 -0.42 6.93 -100.49 -0.70 -1.12 16 9 C -0.11 -0.75 6.99 -27.57 -0.19 -0.95 16 10 C -0.14 -0.69 8.17 -26.21 -0.21 -0.91 16 11 C -0.11 -0.51 7.95 -27.42 -0.22 -0.73 16 12 C -0.14 -1.07 3.48 -90.24 -0.31 -1.38 16 13 C 0.11 1.22 8.08 -8.50 -0.07 1.15 16 14 N -0.65 -9.38 3.69 -185.36 -0.68 -10.06 16 15 C 0.56 11.12 8.10 -10.99 -0.09 11.03 16 16 O -0.51 -12.27 16.64 5.56 0.09 -12.17 16 17 C -0.14 -3.02 5.98 36.00 0.22 -2.80 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.11 1.10 7.97 -8.64 -0.07 1.03 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.40 1.85 8.59 -40.82 -0.35 1.50 16 32 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.09 0.76 7.49 -51.93 -0.39 0.37 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 43 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -37.10 402.62 -10.38 -47.48 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.43 Total: -2.02 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.73 Total: -4.38 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.22 Total: -40.82 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.17 Total: -18.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.10 -10.38 -47.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718267867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.744 kcal (2) G-P(sol) polarization free energy of solvation -37.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds