Wall clock time and date at job start Tue Mar 31 2020 20:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47686 * 2 1 4 4 N 1.46503 * 109.47109 * 239.99707 * 2 1 3 5 5 C 1.34777 * 119.99885 * 85.00120 * 4 2 1 6 6 O 1.21617 * 120.00049 * 359.97438 * 5 4 2 7 7 C 1.47100 * 119.99940 * 180.02562 * 5 4 2 8 8 C 1.32995 * 120.00215 * 179.97438 * 7 5 4 9 9 C 1.51400 * 136.31414 * 359.63003 * 8 7 5 10 10 C 1.53373 * 87.52129 * 206.05772 * 9 8 7 11 11 C 1.51402 * 136.31937 * 180.02562 * 8 7 5 12 12 C 1.52998 * 109.47322 * 120.00044 * 2 1 3 13 13 C 1.53502 * 114.20839 * 185.05483 * 12 2 1 14 14 N 1.47071 * 87.98585 * 139.64965 * 13 12 2 15 15 C 1.34778 * 136.05678 * 152.83907 * 14 13 12 16 16 O 1.21278 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.50692 * 119.99955 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47280 * 180.02562 * 17 15 14 19 19 C 1.76189 * 100.00418 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00315 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00145 * 179.72614 * 19 18 17 22 22 N 1.31626 * 120.00090 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99920 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47096 * 59.99892 * 23 21 19 25 25 H 1.48503 * 109.46637 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47145 * 299.99918 * 23 21 19 27 27 C 1.47065 * 87.88508 * 333.10273 * 14 13 12 28 28 H 1.08999 * 109.47384 * 59.12787 * 1 2 3 29 29 H 1.08998 * 109.47260 * 179.13615 * 1 2 3 30 30 H 1.09001 * 109.47018 * 299.13007 * 1 2 3 31 31 H 0.96999 * 120.00004 * 265.00140 * 4 2 1 32 32 H 1.08005 * 119.99965 * 0.02562 * 7 5 4 33 33 H 1.09000 * 113.56373 * 320.63957 * 9 8 7 34 34 H 1.08999 * 113.56267 * 91.37293 * 9 8 7 35 35 H 1.08997 * 113.97138 * 220.29535 * 10 9 8 36 36 H 1.09003 * 113.59861 * 88.79290 * 10 9 8 37 37 H 1.09006 * 113.56029 * 268.62555 * 11 8 7 38 38 H 1.08996 * 113.56502 * 39.35052 * 11 8 7 39 39 H 1.09001 * 113.28611 * 51.98324 * 12 2 1 40 40 H 1.09004 * 113.46779 * 24.87343 * 13 12 2 41 41 H 1.08993 * 113.52153 * 254.44209 * 13 12 2 42 42 H 1.08996 * 109.47485 * 60.00315 * 17 15 14 43 43 H 1.09001 * 109.47519 * 300.00026 * 17 15 14 44 44 H 0.96994 * 120.00111 * 179.97438 * 22 21 19 45 45 H 1.08996 * 113.46772 * 141.67623 * 27 14 13 46 46 H 1.09002 * 113.46418 * 272.11391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8573 1.1615 -2.4119 7 6 2.6368 -0.7120 -3.5583 8 6 2.7633 -0.0487 -4.7041 9 6 2.5166 1.3661 -5.1832 10 6 2.3211 0.7851 -6.5890 11 6 3.2117 -0.3732 -6.1133 12 6 2.0400 -0.7212 1.2492 13 6 3.5646 -0.6787 1.4222 14 7 3.3434 -0.4661 2.8606 15 6 4.0248 -0.7207 3.9952 16 8 5.1100 -1.2595 3.9429 17 6 3.4381 -0.3359 5.3288 18 16 4.5831 -0.8050 6.6498 19 6 3.6725 -0.2546 8.0541 20 1 2.7074 0.2121 7.9229 21 6 4.1930 -0.4255 9.3294 22 7 5.3667 -0.9992 9.4897 23 14 3.2270 0.1573 10.8183 24 1 1.9202 -0.5462 10.8669 25 1 3.9951 -0.1401 12.0539 26 1 2.9978 1.6210 10.7176 27 6 2.0487 0.1406 2.5163 28 1 -0.3634 0.5273 -0.8820 29 1 -0.3634 -1.0275 -0.0155 30 1 -0.3633 0.5003 0.8977 31 1 2.2489 -1.6318 -1.1526 32 1 2.8928 -1.7601 -3.5100 33 1 1.6135 1.8150 -4.7695 34 1 3.3890 2.0138 -5.0968 35 1 2.7661 1.3857 -7.3823 36 1 1.2930 0.4914 -6.8007 37 1 4.2750 -0.2030 -6.2823 38 1 2.8787 -1.3506 -6.4624 39 1 1.6022 -1.7103 1.3847 40 1 4.0344 0.1701 0.9252 41 1 4.0549 -1.6249 1.1936 42 1 2.4885 -0.8518 5.4706 43 1 3.2739 0.7413 5.3564 44 1 5.7306 -1.1183 10.3809 45 1 1.2518 -0.1110 3.2160 46 1 2.1106 1.2098 2.3137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718267867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:54 Heat of formation + Delta-G solvation = -21.680266 kcal Electronic energy + Delta-G solvation = -25557.388572 eV Core-core repulsion = 21767.717441 eV Total energy + Delta-G solvation = -3789.671131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73858 -40.71402 -39.43700 -38.88583 -36.11268 -34.60157 -32.89559 -31.85150 -30.86562 -28.96134 -27.66136 -26.97560 -26.66175 -25.16293 -23.81595 -21.84978 -21.55106 -20.42656 -19.54489 -19.19819 -18.10705 -17.86079 -17.50740 -16.91795 -16.85348 -16.55709 -16.41452 -15.97076 -15.79290 -15.44518 -15.31390 -15.04581 -14.73940 -14.48967 -14.01766 -13.70738 -13.56802 -13.43659 -13.31984 -13.17994 -13.06458 -12.88404 -12.86919 -12.72548 -12.62223 -12.58965 -11.92512 -11.89699 -11.76803 -11.65810 -11.44766 -11.14094 -10.99503 -10.63438 -10.31971 -10.27336 -9.91201 -9.80140 -8.70429 -8.35718 -6.15232 0.41847 1.18872 1.41929 1.43759 1.51406 1.54555 1.95191 2.17032 2.26232 2.37147 2.98383 3.15711 3.24618 3.47678 3.60927 3.63348 3.69066 3.85250 3.98758 4.11416 4.20880 4.24013 4.27810 4.41685 4.42831 4.46737 4.51624 4.56900 4.61841 4.63542 4.75591 4.84641 4.85702 4.86841 4.94839 5.02738 5.05436 5.18846 5.28927 5.36285 5.37471 5.39966 5.56656 5.70512 6.18195 6.56812 6.66151 7.05026 7.05903 7.34094 8.73396 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032569 B = 0.001666 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.511037 B =16801.244494 C =17295.105012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.077 0.923 4 N -0.711 5.711 5 C 0.546 3.454 6 O -0.584 6.584 7 C -0.211 4.211 8 C -0.072 4.072 9 C -0.118 4.118 10 C -0.136 4.136 11 C -0.099 4.099 12 C -0.107 4.107 13 C 0.106 3.894 14 N -0.653 5.653 15 C 0.559 3.441 16 O -0.569 6.569 17 C -0.118 4.118 18 S -0.151 6.151 19 C -0.549 4.549 20 H 0.083 0.917 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.262 1.262 27 C 0.107 3.893 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.415 0.585 32 H 0.160 0.840 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.272 0.728 45 H 0.100 0.900 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.847 0.808 -32.241 34.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.057 3.943 3 H 0.096 0.904 4 N -0.362 5.362 5 C 0.336 3.664 6 O -0.465 6.465 7 C -0.231 4.231 8 C -0.074 4.074 9 C -0.155 4.155 10 C -0.173 4.173 11 C -0.136 4.136 12 C -0.126 4.126 13 C -0.016 4.016 14 N -0.389 5.389 15 C 0.349 3.651 16 O -0.448 6.448 17 C -0.269 4.269 18 S 0.076 5.924 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.016 4.016 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.252 0.748 32 H 0.178 0.822 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.148 0.852 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.204 0.737 -32.019 33.930 hybrid contribution -1.113 0.518 1.297 1.786 sum -12.316 1.255 -30.722 33.123 Atomic orbital electron populations 1.22105 0.93727 1.03124 1.02555 1.20735 0.94914 0.96332 0.82281 0.90448 1.45825 1.66905 1.14713 1.08807 1.18829 0.76978 0.86220 0.84326 1.90766 1.52409 1.17573 1.85797 1.21762 1.08893 1.01909 0.90553 1.23882 0.90946 0.98100 0.94514 1.22295 1.02365 0.94524 0.96282 1.22727 1.00723 0.97784 0.96087 1.22376 1.01365 1.00443 0.89380 1.23115 0.94278 1.01602 0.93601 1.23137 0.97406 1.02488 0.78589 1.49572 1.22949 1.60977 1.05435 1.19648 0.83469 0.77602 0.84381 1.90688 1.22499 1.44616 1.86997 1.23263 1.03892 1.05447 0.94333 1.85586 1.28372 1.80358 0.98079 1.23164 1.07566 1.46257 0.92643 0.89865 1.26141 0.96224 0.94565 1.02091 1.70175 1.18565 1.41621 1.24361 0.84989 0.78089 0.79077 0.75743 1.18521 1.20316 1.18688 1.23229 0.84457 0.98997 0.94876 0.93724 0.90943 0.90096 0.74821 0.82236 0.91973 0.88530 0.88983 0.89611 0.86833 0.88885 0.85196 0.89695 0.90473 0.87314 0.87765 0.91930 0.88121 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.47 71.98 0.68 -1.08 16 2 C 0.16 2.04 2.34 44.99 0.11 2.15 16 3 H 0.08 1.29 7.44 -2.39 -0.02 1.27 16 4 N -0.71 -8.48 4.95 -446.14 -2.21 -10.69 16 5 C 0.55 9.56 7.73 86.57 0.67 10.23 16 6 O -0.58 -14.86 14.81 -4.08 -0.06 -14.92 16 7 C -0.21 -2.71 10.03 23.43 0.23 -2.48 16 8 C -0.07 -0.95 6.93 -17.18 -0.12 -1.07 16 9 C -0.12 -1.68 6.99 30.05 0.21 -1.47 16 10 C -0.14 -1.14 8.17 30.93 0.25 -0.89 16 11 C -0.10 -0.72 7.95 30.15 0.24 -0.48 16 12 C -0.11 -1.33 3.48 -10.54 -0.04 -1.36 16 13 C 0.11 2.10 8.08 83.18 0.67 2.77 16 14 N -0.65 -17.70 3.69 -858.74 -3.17 -20.87 16 15 C 0.56 22.03 8.10 87.65 0.71 22.74 16 16 O -0.57 -27.97 16.64 -3.02 -0.05 -28.02 16 17 C -0.12 -4.88 5.98 71.23 0.43 -4.46 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 19 C -0.55 -31.61 9.50 67.95 0.65 -30.96 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.84 5.49 84.86 0.47 1.31 16 22 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 23 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 27 C 0.11 1.75 7.97 83.10 0.66 2.41 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.42 2.74 8.59 -92.71 -0.80 1.95 16 32 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.06 1.18 7.49 -2.39 -0.02 1.16 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.67 8.10 -2.38 -0.02 1.65 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 43 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.10 1.44 8.00 -2.39 -0.02 1.42 16 Total: -1.00 -84.87 402.62 1.66 -83.21 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.18 Total: 14.03 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.82 Total: -2.64 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -5.09 Total: -87.54 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.11 Total: -42.94 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -84.87 1.66 -83.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718267867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.526 kcal (2) G-P(sol) polarization free energy of solvation -84.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds