Wall clock time and date at job start Tue Mar 31 2020 21:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.34777 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99786 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00495 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46781 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46685 * 120.00530 * 14 12 10 17 17 H 1.48496 * 109.47112 * 240.00327 * 14 12 10 18 18 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 19 19 C 1.46900 * 110.99890 * 274.99873 * 18 2 1 20 20 C 1.50698 * 109.47212 * 179.97438 * 19 18 2 21 21 C 1.38236 * 120.00314 * 269.72538 * 20 19 18 22 22 C 1.38228 * 120.00339 * 179.74555 * 21 20 19 23 23 C 1.38232 * 119.99718 * 0.52813 * 22 21 20 24 24 C 1.50702 * 120.00246 * 179.77080 * 23 22 21 25 25 O 1.42902 * 109.46863 * 269.98285 * 24 23 22 26 26 C 1.38240 * 120.00308 * 359.75289 * 23 22 21 27 27 C 1.38232 * 119.99618 * 359.97233 * 26 23 22 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 32 32 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 33 33 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47456 * 300.00106 * 8 6 5 35 35 H 1.09002 * 109.47145 * 60.00200 * 8 6 5 36 36 H 0.97009 * 119.99727 * 179.97438 * 13 12 10 37 37 H 1.00898 * 111.00476 * 38.95263 * 18 2 1 38 38 H 1.09002 * 109.47391 * 300.00224 * 19 18 2 39 39 H 1.09005 * 109.47266 * 59.99895 * 19 18 2 40 40 H 1.08005 * 119.99334 * 359.97438 * 21 20 19 41 41 H 1.07994 * 120.00207 * 180.29986 * 22 21 20 42 42 H 1.08999 * 109.47260 * 29.97487 * 24 23 22 43 43 H 1.08999 * 109.47602 * 149.98283 * 24 23 22 44 44 H 0.96708 * 114.00000 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.00266 * 180.02562 * 26 23 22 46 46 H 1.08004 * 120.00360 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5702 -1.8826 -3.1402 8 6 5.6750 -1.5370 -2.1303 9 16 6.2784 -2.3902 -3.6082 10 6 8.0101 -2.3772 -3.2834 11 1 8.3864 -1.9247 -2.3778 12 6 8.8908 -2.9495 -4.1908 13 7 8.4322 -3.5015 -5.2943 14 14 10.7268 -2.9351 -3.8468 15 1 10.9820 -2.2591 -2.5495 16 1 11.2296 -4.3310 -3.7845 17 1 11.4282 -2.2044 -4.9327 18 7 2.0196 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5872 -0.5219 3.5561 21 6 1.6938 -1.1472 4.4056 22 6 2.1571 -1.8344 5.5118 23 6 3.5132 -1.8872 5.7745 24 6 4.0182 -2.6321 6.9834 25 8 4.0795 -1.7422 8.0998 26 6 4.4064 -1.2570 4.9283 27 6 3.9433 -0.5745 3.8189 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 6.1100 -0.5386 -2.0837 35 1 5.9630 -2.1006 -1.2429 36 1 9.0478 -3.9011 -5.9288 37 1 1.4495 -1.4979 1.4101 38 1 2.7588 1.0462 2.1183 39 1 1.0870 0.6163 2.5525 40 1 0.6339 -1.1019 4.2028 41 1 1.4595 -2.3271 6.1727 42 1 3.3413 -3.4553 7.2119 43 1 5.0134 -3.0263 6.7779 44 1 4.3973 -2.1548 8.9147 45 1 5.4658 -1.2985 5.1334 46 1 4.6410 -0.0824 3.1575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731580103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:06 Heat of formation + Delta-G solvation = -69.845470 kcal Electronic energy + Delta-G solvation = -25495.855974 eV Core-core repulsion = 21704.096244 eV Total energy + Delta-G solvation = -3791.759731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.95000 -39.13172 -37.69479 -36.87027 -34.18365 -32.69030 -32.37889 -31.22773 -30.44285 -29.19740 -27.04433 -25.87298 -25.30554 -23.90131 -23.04482 -21.29332 -20.96536 -20.09204 -17.86879 -17.78239 -16.94208 -16.23996 -16.12044 -16.06580 -16.01055 -15.42131 -14.95804 -14.76394 -14.63350 -14.28993 -13.95693 -13.91680 -13.65418 -13.51797 -13.40934 -12.91472 -12.82813 -12.76953 -12.51688 -12.38516 -12.17179 -11.95917 -11.64277 -11.32979 -11.28638 -11.04767 -11.03633 -10.96559 -10.71325 -10.51115 -9.75142 -9.28038 -9.19027 -9.07553 -9.03090 -8.72919 -8.65761 -8.15950 -6.43529 -6.17170 -3.86623 0.91406 1.14568 3.13744 3.23945 3.25262 3.28302 3.32013 3.38705 3.80816 3.95507 4.10675 4.25199 4.42369 4.47143 4.57689 4.64936 4.72811 4.73917 4.79042 4.95587 4.98598 5.08255 5.17226 5.17908 5.24500 5.28072 5.34934 5.39807 5.47086 5.67193 5.67940 5.71145 5.77547 5.77767 5.95287 6.00697 6.07438 6.24484 6.27750 6.31087 6.59532 6.70259 6.80889 7.04295 7.15856 7.64603 7.94906 8.40313 8.78913 9.28279 10.90326 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.002358 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.324961 B =11870.714587 C =14579.684154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.071 3.929 3 H 0.085 0.915 4 C 0.134 3.866 5 N -0.724 5.724 6 C 0.530 3.470 7 O -0.526 6.526 8 C -0.151 4.151 9 S -0.063 6.063 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.677 5.677 19 C 0.097 3.903 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.095 4.095 24 C 0.116 3.884 25 O -0.569 6.569 26 C -0.099 4.099 27 C -0.098 4.098 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.267 0.733 37 H 0.346 0.654 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.380 0.620 45 H 0.123 0.877 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 6.974 25.325 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.039 4.039 3 H 0.103 0.897 4 C 0.009 3.991 5 N -0.378 5.378 6 C 0.316 3.684 7 O -0.401 6.401 8 C -0.302 4.302 9 S 0.164 5.836 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.308 5.308 19 C -0.031 4.031 20 C -0.077 4.077 21 C -0.136 4.136 22 C -0.119 4.119 23 C -0.095 4.095 24 C 0.039 3.961 25 O -0.375 6.375 26 C -0.117 4.117 27 C -0.116 4.116 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.165 0.835 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.227 0.773 45 H 0.141 0.859 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.872 6.632 22.950 28.681 hybrid contribution 1.326 0.292 2.326 2.694 sum -14.546 6.924 25.277 29.974 Atomic orbital electron populations 1.22416 0.96145 1.02739 1.02647 1.21859 0.93340 0.98406 0.90296 0.89656 1.21221 0.81427 1.00524 0.95902 1.45771 1.06687 1.61360 1.24016 1.20270 0.89428 0.76926 0.81808 1.90688 1.69935 1.46516 1.32947 1.23502 0.93870 1.05421 1.07366 1.85377 1.04479 1.73249 1.20506 1.22917 0.91619 1.43979 1.09575 0.90928 1.24997 0.99546 0.94638 0.94509 1.70039 1.35213 1.35682 1.09433 0.86121 0.83091 0.77945 0.78367 1.19621 1.20616 1.20612 1.60562 1.57938 1.09429 1.02880 1.20930 0.99647 0.94588 0.87928 1.19794 0.93699 0.98411 0.95761 1.20999 0.99305 0.98199 0.95091 1.20963 0.94717 0.98962 0.97243 1.19608 0.93781 1.00153 0.95975 1.20998 0.99714 0.90771 0.84662 1.86567 1.89897 1.40064 1.20930 1.21080 0.99605 0.96520 0.94473 1.21058 0.95027 0.98751 0.96769 0.92383 0.91387 0.91923 0.91866 0.91459 0.76278 0.89452 0.89312 0.92312 0.83486 0.89932 0.94206 0.86236 0.86163 0.92770 0.92578 0.77302 0.85880 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.16 37.16 0.34 -0.80 16 2 C 0.07 0.56 2.75 -67.71 -0.19 0.37 16 3 H 0.09 0.64 7.80 -51.93 -0.40 0.23 16 4 C 0.13 1.56 5.37 -4.04 -0.02 1.54 16 5 N -0.72 -10.15 5.39 -60.30 -0.32 -10.47 16 6 C 0.53 10.29 7.85 -10.99 -0.09 10.20 16 7 O -0.53 -12.35 15.86 5.56 0.09 -12.26 16 8 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 9 S -0.06 -1.74 20.57 -107.50 -2.21 -3.96 16 10 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 11 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 14 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 N -0.68 -5.33 5.68 -107.99 -0.61 -5.95 16 19 C 0.10 0.68 5.61 -4.98 -0.03 0.66 16 20 C -0.08 -0.64 5.39 -104.62 -0.56 -1.20 16 21 C -0.12 -0.94 9.70 -39.59 -0.38 -1.32 16 22 C -0.10 -0.85 9.70 -39.59 -0.38 -1.23 16 23 C -0.09 -0.86 5.51 -104.62 -0.58 -1.43 16 24 C 0.12 0.81 7.17 36.01 0.26 1.07 16 25 O -0.57 -4.33 13.64 -35.23 -0.48 -4.81 16 26 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 27 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 28 H 0.06 0.32 7.45 -51.93 -0.39 -0.06 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.40 4.82 8.14 -40.82 -0.33 4.48 16 34 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 37 H 0.35 2.72 8.46 -39.29 -0.33 2.39 16 38 H 0.08 0.57 8.00 -51.93 -0.42 0.15 16 39 H 0.04 0.25 7.38 -51.93 -0.38 -0.14 16 40 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 43 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 44 H 0.38 1.02 9.12 45.56 0.42 1.44 16 45 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 46 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -36.78 403.71 -10.18 -46.96 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.45 Total: 4.34 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.98 Total: -10.81 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.20 Total: -42.21 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.39 Total: -17.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.78 -10.18 -46.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.888 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds