Wall clock time and date at job start Tue Mar 31 2020 21:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.34777 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99786 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00495 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46781 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46685 * 120.00530 * 14 12 10 17 17 H 1.48496 * 109.47112 * 240.00327 * 14 12 10 18 18 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 19 19 C 1.46900 * 110.99890 * 274.99873 * 18 2 1 20 20 C 1.50698 * 109.47212 * 179.97438 * 19 18 2 21 21 C 1.38236 * 120.00314 * 269.72538 * 20 19 18 22 22 C 1.38228 * 120.00339 * 179.74555 * 21 20 19 23 23 C 1.38232 * 119.99718 * 0.52813 * 22 21 20 24 24 C 1.50702 * 120.00246 * 179.77080 * 23 22 21 25 25 O 1.42902 * 109.46863 * 269.98285 * 24 23 22 26 26 C 1.38240 * 120.00308 * 359.75289 * 23 22 21 27 27 C 1.38232 * 119.99618 * 359.97233 * 26 23 22 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 32 32 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 33 33 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47456 * 300.00106 * 8 6 5 35 35 H 1.09002 * 109.47145 * 60.00200 * 8 6 5 36 36 H 0.97009 * 119.99727 * 179.97438 * 13 12 10 37 37 H 1.00898 * 111.00476 * 38.95263 * 18 2 1 38 38 H 1.09002 * 109.47391 * 300.00224 * 19 18 2 39 39 H 1.09005 * 109.47266 * 59.99895 * 19 18 2 40 40 H 1.08005 * 119.99334 * 359.97438 * 21 20 19 41 41 H 1.07994 * 120.00207 * 180.29986 * 22 21 20 42 42 H 1.08999 * 109.47260 * 29.97487 * 24 23 22 43 43 H 1.08999 * 109.47602 * 149.98283 * 24 23 22 44 44 H 0.96708 * 114.00000 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.00266 * 180.02562 * 26 23 22 46 46 H 1.08004 * 120.00360 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5702 -1.8826 -3.1402 8 6 5.6750 -1.5370 -2.1303 9 16 6.2784 -2.3902 -3.6082 10 6 8.0101 -2.3772 -3.2834 11 1 8.3864 -1.9247 -2.3778 12 6 8.8908 -2.9495 -4.1908 13 7 8.4322 -3.5015 -5.2943 14 14 10.7268 -2.9351 -3.8468 15 1 10.9820 -2.2591 -2.5495 16 1 11.2296 -4.3310 -3.7845 17 1 11.4282 -2.2044 -4.9327 18 7 2.0196 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5872 -0.5219 3.5561 21 6 1.6938 -1.1472 4.4056 22 6 2.1571 -1.8344 5.5118 23 6 3.5132 -1.8872 5.7745 24 6 4.0182 -2.6321 6.9834 25 8 4.0795 -1.7422 8.0998 26 6 4.4064 -1.2570 4.9283 27 6 3.9433 -0.5745 3.8189 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 6.1100 -0.5386 -2.0837 35 1 5.9630 -2.1006 -1.2429 36 1 9.0478 -3.9011 -5.9288 37 1 1.4495 -1.4979 1.4101 38 1 2.7588 1.0462 2.1183 39 1 1.0870 0.6163 2.5525 40 1 0.6339 -1.1019 4.2028 41 1 1.4595 -2.3271 6.1727 42 1 3.3413 -3.4553 7.2119 43 1 5.0134 -3.0263 6.7779 44 1 4.3973 -2.1548 8.9147 45 1 5.4658 -1.2985 5.1334 46 1 4.6410 -0.0824 3.1575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731580103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:05 Heat of formation + Delta-G solvation = -98.083151 kcal Electronic energy + Delta-G solvation = -25497.080452 eV Core-core repulsion = 21704.096244 eV Total energy + Delta-G solvation = -3792.984208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67626 -40.40170 -38.47540 -37.47751 -35.26227 -34.57131 -33.53234 -31.83537 -31.37624 -30.44590 -27.72465 -27.59399 -26.66064 -24.48843 -23.65841 -22.02376 -21.59390 -21.55894 -19.78403 -18.37580 -17.81918 -17.59735 -17.05709 -16.90409 -16.86963 -16.74926 -16.22423 -16.09644 -15.80073 -15.37865 -14.95391 -14.67706 -14.49228 -14.45598 -14.26397 -14.17736 -13.97305 -13.76326 -13.33743 -13.19383 -13.14403 -12.99629 -12.89922 -12.78182 -12.59036 -12.47615 -11.96357 -11.91700 -11.71476 -11.65410 -11.14735 -10.99976 -10.89987 -10.25342 -9.98401 -9.81834 -9.68452 -9.31832 -8.64855 -8.33583 -6.11250 0.29914 0.51619 1.29226 1.42069 1.48881 1.60361 1.69594 2.28014 2.40639 2.67876 3.00367 3.29092 3.36879 3.59798 3.83891 3.88726 3.91477 4.04573 4.10339 4.17237 4.20770 4.21601 4.32903 4.36348 4.50637 4.53933 4.56388 4.60140 4.66569 4.69145 4.81453 4.83818 4.93151 5.00644 5.10214 5.17898 5.27091 5.43184 5.46028 5.55991 5.66441 5.69198 6.01048 6.11116 6.21356 6.41853 6.64761 6.87512 7.07672 7.35279 8.75958 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.002358 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.324961 B =11870.714587 C =14579.684154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.085 3.915 3 H 0.097 0.903 4 C 0.131 3.869 5 N -0.697 5.697 6 C 0.530 3.470 7 O -0.573 6.573 8 C -0.127 4.127 9 S -0.152 6.152 10 C -0.544 4.544 11 H 0.081 0.919 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.273 1.273 18 N -0.686 5.686 19 C 0.104 3.896 20 C -0.082 4.082 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.112 4.112 24 C 0.115 3.885 25 O -0.590 6.590 26 C -0.117 4.117 27 C -0.112 4.112 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.347 0.653 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.399 0.601 45 H 0.126 0.874 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.359 8.076 27.581 32.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.025 4.025 3 H 0.115 0.885 4 C 0.006 3.994 5 N -0.350 5.350 6 C 0.316 3.684 7 O -0.453 6.453 8 C -0.278 4.278 9 S 0.075 5.925 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.199 1.199 18 N -0.317 5.317 19 C -0.024 4.024 20 C -0.083 4.083 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.113 4.113 24 C 0.038 3.962 25 O -0.399 6.399 26 C -0.135 4.135 27 C -0.131 4.131 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.166 0.834 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.249 0.751 45 H 0.144 0.856 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.911 7.760 25.277 30.860 hybrid contribution 1.228 -0.019 1.732 2.123 sum -14.682 7.742 27.009 31.702 Atomic orbital electron populations 1.22362 0.94610 1.02939 1.03472 1.21704 0.94317 0.98079 0.88435 0.88520 1.21434 0.79394 1.00462 0.98066 1.45560 1.07850 1.58974 1.22613 1.20037 0.88811 0.77259 0.82332 1.90676 1.70465 1.49031 1.35081 1.23342 0.95114 1.05497 1.03868 1.85550 1.05839 1.75197 1.25918 1.23231 0.91676 1.44236 1.10059 0.90038 1.26147 1.05273 0.93827 0.94036 1.70200 1.37307 1.36655 1.10665 0.84890 0.75820 0.78299 0.78839 1.18044 1.19917 1.19870 1.60495 1.58229 1.09799 1.03216 1.20899 1.00465 0.94132 0.86910 1.19964 0.93468 0.98512 0.96325 1.21270 1.00295 0.97618 0.94745 1.21243 0.94875 0.99151 0.97738 1.19951 0.94226 1.00342 0.96731 1.21042 1.00427 0.90699 0.84025 1.86506 1.90195 1.41131 1.22068 1.21272 1.00069 0.97172 0.95003 1.21240 0.95726 0.99122 0.97008 0.90844 0.91248 0.92092 0.93021 0.91902 0.74674 0.87479 0.87716 0.92015 0.83387 0.89587 0.92717 0.84370 0.84804 0.91317 0.91908 0.75079 0.85571 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.16 71.98 0.66 -1.10 16 2 C 0.08 1.12 2.75 44.92 0.12 1.24 16 3 H 0.10 1.13 7.80 -2.39 -0.02 1.11 16 4 C 0.13 2.88 5.37 86.38 0.46 3.34 16 5 N -0.70 -18.51 5.39 -463.07 -2.50 -21.00 16 6 C 0.53 20.41 7.85 87.65 0.69 21.10 16 7 O -0.57 -27.49 15.86 -3.03 -0.05 -27.54 16 8 C -0.13 -5.25 6.16 71.23 0.44 -4.81 16 9 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 10 C -0.54 -31.65 9.50 67.95 0.65 -31.01 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.68 5.49 84.86 0.47 1.14 16 13 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 14 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 N -0.69 -9.16 5.68 -495.56 -2.81 -11.98 16 19 C 0.10 1.19 5.61 85.56 0.48 1.67 16 20 C -0.08 -1.23 5.39 -19.87 -0.11 -1.34 16 21 C -0.12 -1.71 9.70 22.27 0.22 -1.50 16 22 C -0.11 -1.74 9.70 22.27 0.22 -1.52 16 23 C -0.11 -1.93 5.51 -19.86 -0.11 -2.04 16 24 C 0.12 1.49 7.17 71.24 0.51 2.00 16 25 O -0.59 -8.34 13.64 -148.98 -2.03 -10.37 16 26 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 27 C -0.11 -1.94 9.70 22.27 0.22 -1.72 16 28 H 0.07 0.56 7.45 -2.39 -0.02 0.54 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.42 8.97 8.14 -92.71 -0.75 8.21 16 34 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 36 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 37 H 0.35 4.68 8.46 -89.70 -0.76 3.92 16 38 H 0.09 0.94 8.00 -2.39 -0.02 0.92 16 39 H 0.05 0.48 7.38 -2.38 -0.02 0.47 16 40 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 43 H 0.06 0.69 8.09 -2.39 -0.02 0.67 16 44 H 0.40 1.66 9.12 -74.05 -0.68 0.99 16 45 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 46 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -81.44 403.71 -2.30 -83.74 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -1.18 Total: 23.67 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.12 Total: -16.45 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -5.02 Total: -89.43 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -2.08 Total: -37.91 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -81.44 -2.30 -83.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731580103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.344 kcal (2) G-P(sol) polarization free energy of solvation -81.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds