Wall clock time and date at job start Tue Mar 31 2020 20:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46941 * 2 1 4 4 C 1.52992 * 109.47617 * 239.99587 * 2 1 3 5 5 N 1.46898 * 109.47359 * 185.00193 * 4 2 1 6 6 C 1.46911 * 110.99802 * 293.95064 * 5 4 2 7 7 C 1.46895 * 111.00377 * 170.00274 * 5 4 2 8 8 C 1.50700 * 109.47434 * 189.99780 * 7 5 4 9 9 O 1.21289 * 119.99597 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00198 * 179.97438 * 8 7 5 11 11 C 1.37095 * 120.00083 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00022 * 359.97438 * 11 10 8 13 13 C 1.38956 * 120.00350 * 180.02562 * 11 10 8 14 14 N 1.31406 * 120.00277 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99511 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47399 * 89.99855 * 15 13 11 17 17 H 1.48505 * 109.46530 * 210.00066 * 15 13 11 18 18 H 1.48497 * 109.46886 * 329.99590 * 15 13 11 19 19 N 1.46495 * 109.47037 * 119.99090 * 2 1 3 20 20 C 1.34781 * 120.00673 * 275.00816 * 19 2 1 21 21 O 1.21532 * 119.99220 * 359.97438 * 20 19 2 22 22 C 1.47992 * 120.00325 * 179.97438 * 20 19 2 23 23 C 1.39905 * 120.94298 * 359.97438 * 22 20 19 24 24 C 1.38034 * 119.03436 * 179.72954 * 23 22 20 25 25 N 1.31863 * 120.98629 * 0.02562 * 24 23 22 26 26 C 1.31717 * 122.09312 * 359.97438 * 25 24 23 27 27 C 1.38540 * 120.84602 * 359.97438 * 26 25 24 28 28 F 1.35107 * 120.53999 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.47352 * 300.00355 * 1 2 3 30 30 H 1.09002 * 109.46468 * 60.00437 * 1 2 3 31 31 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47346 * 305.00156 * 4 2 1 33 33 H 1.09004 * 109.47124 * 65.00069 * 4 2 1 34 34 H 1.09003 * 109.46803 * 60.00282 * 6 5 4 35 35 H 1.08997 * 109.46847 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.47199 * 300.00180 * 6 5 4 37 37 H 1.08999 * 109.46843 * 309.99512 * 7 5 4 38 38 H 1.08995 * 109.47688 * 69.99349 * 7 5 4 39 39 H 0.97004 * 120.00123 * 359.97438 * 10 8 7 40 40 H 0.97003 * 120.00187 * 180.02562 * 14 13 11 41 41 H 0.97002 * 120.00185 * 94.99989 * 19 2 1 42 42 H 1.07999 * 120.47723 * 359.70413 * 23 22 20 43 43 H 1.08007 * 119.50826 * 179.97438 * 24 23 22 44 44 H 1.07992 * 119.58016 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.1311 0.4994 -1.2719 7 6 4.0110 -1.7144 -2.2451 8 6 5.4727 -1.9937 -2.0074 9 8 6.0368 -1.5012 -1.0533 10 7 6.1530 -2.7906 -2.8550 11 6 7.4826 -3.0451 -2.6385 12 1 7.9850 -2.6066 -1.7889 13 6 8.1843 -3.8663 -3.5126 14 7 9.4588 -4.1098 -3.3053 15 14 7.3158 -4.6230 -4.9833 16 1 7.4259 -3.7081 -6.1478 17 1 7.9480 -5.9251 -5.3152 18 1 5.8834 -4.8374 -4.6559 19 7 2.0183 -0.6904 1.1962 20 6 2.1469 -0.0180 2.3573 21 8 1.8582 1.1613 2.4115 22 6 2.6397 -0.7157 3.5658 23 6 2.9772 -2.0728 3.5257 24 6 3.4381 -2.6828 4.6749 25 7 3.5620 -2.0060 5.7998 26 6 3.2565 -0.7276 5.8846 27 6 2.7873 -0.0346 4.7806 28 9 2.4763 1.2768 4.8744 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6056 -1.7198 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.7911 1.1140 -0.4383 35 1 5.2148 0.3923 -1.2255 36 1 3.8526 0.9757 -2.2118 37 1 3.4548 -2.6517 -2.2295 38 1 3.8860 -1.2340 -3.2155 39 1 5.7018 -3.1848 -3.6179 40 1 9.9487 -4.6828 -3.9158 41 1 2.2490 -1.6316 1.1529 42 1 2.8781 -2.6350 2.6089 43 1 3.7005 -3.7303 4.6527 44 1 3.3740 -0.2128 6.8267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733033638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:41 Heat of formation + Delta-G solvation = -59.186270 kcal Electronic energy + Delta-G solvation = -29225.914043 eV Core-core repulsion = 24900.696105 eV Total energy + Delta-G solvation = -4325.217938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.12107 -40.71650 -39.56005 -38.76736 -37.15201 -34.91328 -33.90895 -33.24190 -31.72753 -31.21177 -30.84574 -28.26730 -27.05704 -25.45204 -24.77119 -23.80907 -22.70067 -21.38611 -20.53608 -19.40556 -18.59251 -18.27150 -17.54112 -17.51062 -16.31999 -16.25297 -16.12131 -15.69961 -15.43435 -14.99515 -14.88672 -14.64385 -14.63123 -14.17536 -14.09959 -13.70745 -13.68302 -13.53247 -13.31417 -12.96182 -12.68547 -12.47120 -12.40216 -12.23118 -12.07535 -11.89218 -11.54666 -11.42413 -11.08626 -10.88183 -10.64464 -10.51578 -10.23382 -10.02345 -9.81794 -9.58853 -9.31432 -9.18986 -8.65227 -8.23684 -8.06932 -6.35631 -3.87328 0.27783 0.58314 2.65526 2.84379 2.97280 3.02161 3.10934 3.41915 3.65483 3.67694 3.77709 4.05486 4.08370 4.25113 4.34423 4.44737 4.59595 4.71404 4.93215 5.01960 5.07195 5.16679 5.27804 5.28805 5.35140 5.39648 5.44462 5.48607 5.49838 5.56977 5.77607 5.78671 5.81214 5.89426 5.95370 6.19323 6.31097 6.46762 7.04096 7.17036 7.32255 7.42433 7.53330 8.00641 8.09717 8.55126 8.90631 9.37488 9.78120 10.77412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002861 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.568069 B = 9783.117124 C =11191.187602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.091 0.909 4 C 0.042 3.958 5 N -0.516 5.516 6 C 0.019 3.981 7 C 0.042 3.958 8 C 0.451 3.549 9 O -0.558 6.558 10 N -0.590 5.590 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.042 3.958 14 N -0.880 5.880 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.270 1.270 19 N -0.695 5.695 20 C 0.560 3.440 21 O -0.526 6.526 22 C -0.123 4.123 23 C -0.104 4.104 24 C 0.085 3.915 25 N -0.442 5.442 26 C 0.068 3.932 27 C 0.103 3.897 28 F -0.107 7.107 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.016 0.984 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.405 0.595 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.846 2.983 8.376 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.087 4.087 5 N -0.240 5.240 6 C -0.128 4.128 7 C -0.089 4.089 8 C 0.237 3.763 9 O -0.440 6.440 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.520 5.520 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.346 5.346 20 C 0.346 3.654 21 O -0.403 6.403 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.071 4.071 25 N -0.150 5.150 26 C -0.091 4.091 27 C 0.080 3.920 28 F -0.085 7.085 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.035 0.965 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.241 0.759 42 H 0.169 0.831 43 H 0.189 0.811 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.039 3.477 10.142 21.850 hybrid contribution -0.888 -0.235 -2.931 3.072 sum -19.927 3.242 7.211 21.438 Atomic orbital electron populations 1.22159 0.94780 1.02346 1.02813 1.21008 0.93468 0.97810 0.83447 0.89099 1.22514 0.89182 1.00964 0.96068 1.61580 1.03170 1.12449 1.46782 1.22588 1.03133 0.88323 0.98796 1.21916 0.96195 0.97713 0.93125 1.19615 0.87572 0.83818 0.85294 1.90540 1.69768 1.53060 1.30611 1.42216 1.10945 1.44619 1.25219 1.19416 0.83038 1.28097 1.12840 0.86291 1.25040 0.95554 0.97400 0.98125 1.69617 1.07516 1.37223 1.37671 0.86678 0.79471 0.79972 0.83276 1.19688 1.20164 1.19514 1.45644 1.65992 1.14376 1.08572 1.17830 0.78246 0.86427 0.82905 1.90828 1.49711 1.14892 1.84861 1.20612 1.03579 0.95191 0.94128 1.22396 0.96165 0.92976 1.00952 1.22856 0.95911 1.01008 0.87344 1.67593 1.12217 1.07228 1.28012 1.22977 0.97463 0.90775 0.97890 1.18904 0.98824 0.79798 0.94427 1.91614 1.89580 1.30906 1.96436 0.91776 0.91416 0.92212 0.90126 0.93208 0.91974 0.88477 0.96507 0.89297 0.93282 0.79765 0.91578 0.75891 0.83088 0.81108 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.15 1.52 2.35 -67.94 -0.16 1.36 16 3 H 0.09 1.13 6.23 -51.93 -0.32 0.81 16 4 C 0.04 0.41 4.52 -3.83 -0.02 0.40 16 5 N -0.52 -7.20 4.22 -244.38 -1.03 -8.23 16 6 C 0.02 0.29 8.96 60.07 0.54 0.83 16 7 C 0.04 0.63 5.45 -4.98 -0.03 0.60 16 8 C 0.45 9.58 7.48 -10.99 -0.08 9.49 16 9 O -0.56 -14.08 13.91 5.55 0.08 -14.01 16 10 N -0.59 -13.37 5.09 -10.96 -0.06 -13.43 16 11 C -0.31 -8.35 10.16 -14.93 -0.15 -8.51 16 12 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 15 Si 0.88 18.75 27.74 -169.99 -4.72 14.03 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 19 N -0.69 -7.59 4.76 -54.71 -0.26 -7.85 16 20 C 0.56 7.47 7.76 -12.26 -0.10 7.37 16 21 O -0.53 -8.70 15.14 5.34 0.08 -8.62 16 22 C -0.12 -1.46 5.91 -104.60 -0.62 -2.08 16 23 C -0.10 -0.97 9.61 -39.03 -0.38 -1.35 16 24 C 0.08 0.77 11.17 -17.61 -0.20 0.58 16 25 N -0.44 -4.69 10.33 -13.25 -0.14 -4.82 16 26 C 0.07 0.69 11.17 -17.49 -0.20 0.49 16 27 C 0.10 1.24 7.33 -38.79 -0.28 0.96 16 28 F -0.11 -1.47 15.72 2.25 0.04 -1.43 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 33 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.06 0.93 6.58 -51.93 -0.34 0.58 16 35 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 36 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 38 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 39 H 0.37 7.32 5.76 -40.82 -0.24 7.09 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.40 3.80 6.74 -40.82 -0.28 3.52 16 42 H 0.15 1.06 6.54 -52.49 -0.34 0.72 16 43 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -34.76 372.60 -6.61 -41.37 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.58 Total: 11.66 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.41 Total: 10.18 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.71 Total: -58.78 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.16 Total: -22.63 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.72 Total: 14.03 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.76 -6.61 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733033638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.820 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds