Wall clock time and date at job start Tue Mar 31 2020 20:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46941 * 2 1 4 4 C 1.52992 * 109.47617 * 239.99587 * 2 1 3 5 5 N 1.46898 * 109.47359 * 185.00193 * 4 2 1 6 6 C 1.46911 * 110.99802 * 293.95064 * 5 4 2 7 7 C 1.46895 * 111.00377 * 170.00274 * 5 4 2 8 8 C 1.50700 * 109.47434 * 189.99780 * 7 5 4 9 9 O 1.21289 * 119.99597 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00198 * 179.97438 * 8 7 5 11 11 C 1.37095 * 120.00083 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00022 * 359.97438 * 11 10 8 13 13 C 1.38956 * 120.00350 * 180.02562 * 11 10 8 14 14 N 1.31406 * 120.00277 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99511 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47399 * 89.99855 * 15 13 11 17 17 H 1.48505 * 109.46530 * 210.00066 * 15 13 11 18 18 H 1.48497 * 109.46886 * 329.99590 * 15 13 11 19 19 N 1.46495 * 109.47037 * 119.99090 * 2 1 3 20 20 C 1.34781 * 120.00673 * 275.00816 * 19 2 1 21 21 O 1.21532 * 119.99220 * 359.97438 * 20 19 2 22 22 C 1.47992 * 120.00325 * 179.97438 * 20 19 2 23 23 C 1.39905 * 120.94298 * 359.97438 * 22 20 19 24 24 C 1.38034 * 119.03436 * 179.72954 * 23 22 20 25 25 N 1.31863 * 120.98629 * 0.02562 * 24 23 22 26 26 C 1.31717 * 122.09312 * 359.97438 * 25 24 23 27 27 C 1.38540 * 120.84602 * 359.97438 * 26 25 24 28 28 F 1.35107 * 120.53999 * 180.02562 * 27 26 25 29 29 H 1.08996 * 109.47352 * 300.00355 * 1 2 3 30 30 H 1.09002 * 109.46468 * 60.00437 * 1 2 3 31 31 H 1.09002 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47346 * 305.00156 * 4 2 1 33 33 H 1.09004 * 109.47124 * 65.00069 * 4 2 1 34 34 H 1.09003 * 109.46803 * 60.00282 * 6 5 4 35 35 H 1.08997 * 109.46847 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.47199 * 300.00180 * 6 5 4 37 37 H 1.08999 * 109.46843 * 309.99512 * 7 5 4 38 38 H 1.08995 * 109.47688 * 69.99349 * 7 5 4 39 39 H 0.97004 * 120.00123 * 359.97438 * 10 8 7 40 40 H 0.97003 * 120.00187 * 180.02562 * 14 13 11 41 41 H 0.97002 * 120.00185 * 94.99989 * 19 2 1 42 42 H 1.07999 * 120.47723 * 359.70413 * 23 22 20 43 43 H 1.08007 * 119.50826 * 179.97438 * 24 23 22 44 44 H 1.07992 * 119.58016 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.1311 0.4994 -1.2719 7 6 4.0110 -1.7144 -2.2451 8 6 5.4727 -1.9937 -2.0074 9 8 6.0368 -1.5012 -1.0533 10 7 6.1530 -2.7906 -2.8550 11 6 7.4826 -3.0451 -2.6385 12 1 7.9850 -2.6066 -1.7889 13 6 8.1843 -3.8663 -3.5126 14 7 9.4588 -4.1098 -3.3053 15 14 7.3158 -4.6230 -4.9833 16 1 7.4259 -3.7081 -6.1478 17 1 7.9480 -5.9251 -5.3152 18 1 5.8834 -4.8374 -4.6559 19 7 2.0183 -0.6904 1.1962 20 6 2.1469 -0.0180 2.3573 21 8 1.8582 1.1613 2.4115 22 6 2.6397 -0.7157 3.5658 23 6 2.9772 -2.0728 3.5257 24 6 3.4381 -2.6828 4.6749 25 7 3.5620 -2.0060 5.7998 26 6 3.2565 -0.7276 5.8846 27 6 2.7873 -0.0346 4.7806 28 9 2.4763 1.2768 4.8744 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6056 -1.7198 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.7911 1.1140 -0.4383 35 1 5.2148 0.3923 -1.2255 36 1 3.8526 0.9757 -2.2118 37 1 3.4548 -2.6517 -2.2295 38 1 3.8860 -1.2340 -3.2155 39 1 5.7018 -3.1848 -3.6179 40 1 9.9487 -4.6828 -3.9158 41 1 2.2490 -1.6316 1.1529 42 1 2.8781 -2.6350 2.6089 43 1 3.7005 -3.7303 4.6527 44 1 3.3740 -0.2128 6.8267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733033638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:40 Heat of formation + Delta-G solvation = -87.540451 kcal Electronic energy + Delta-G solvation = -29227.143573 eV Core-core repulsion = 24900.696105 eV Total energy + Delta-G solvation = -4326.447467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08017 -41.59897 -40.61189 -40.19054 -38.35429 -36.17965 -35.60999 -34.11969 -33.71256 -32.01692 -31.69430 -29.61359 -28.02022 -26.60714 -26.19896 -24.64197 -23.84210 -22.32669 -21.45503 -21.19538 -20.13373 -19.43341 -18.42464 -18.40515 -17.75203 -17.20701 -17.06255 -16.82240 -16.64083 -16.50930 -16.03459 -15.75559 -15.54214 -15.39705 -15.17247 -14.94060 -14.82396 -14.56662 -14.46749 -14.32791 -14.10421 -13.63051 -13.42084 -13.20435 -13.13982 -12.88995 -12.80438 -12.65893 -12.45556 -12.35108 -11.95854 -11.75204 -11.48706 -11.43115 -11.10773 -10.69836 -10.33669 -10.19387 -10.15106 -10.06815 -9.22243 -8.37996 -5.98502 -0.59469 -0.19857 1.32044 1.38221 1.46985 1.70825 1.96661 2.02293 2.25840 2.58699 2.61880 2.83319 3.18888 3.25632 3.36200 3.43326 3.56293 3.66643 3.77520 4.09576 4.18053 4.28329 4.31410 4.40394 4.47174 4.51019 4.55652 4.59119 4.64148 4.71309 4.73150 4.77988 4.81193 5.02065 5.17598 5.29041 5.41647 5.45554 5.56384 5.90948 6.01495 6.16213 6.42015 6.63956 6.64359 6.93565 7.07473 7.45336 8.03909 8.79811 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.002861 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.568069 B = 9783.117124 C =11191.187602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.063 0.937 4 C 0.048 3.952 5 N -0.532 5.532 6 C 0.029 3.971 7 C 0.055 3.945 8 C 0.451 3.549 9 O -0.606 6.606 10 N -0.593 5.593 11 C -0.324 4.324 12 H 0.053 0.947 13 C -0.017 4.017 14 N -0.938 5.938 15 Si 0.965 3.035 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.225 1.225 19 N -0.683 5.683 20 C 0.554 3.446 21 O -0.569 6.569 22 C -0.141 4.141 23 C -0.098 4.098 24 C 0.088 3.912 25 N -0.457 5.457 26 C 0.073 3.927 27 C 0.077 3.923 28 F -0.125 7.125 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.389 0.611 40 H 0.278 0.722 41 H 0.414 0.586 42 H 0.177 0.823 43 H 0.203 0.797 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.287 0.682 6.009 24.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.080 4.080 5 N -0.256 5.256 6 C -0.119 4.119 7 C -0.076 4.076 8 C 0.239 3.761 9 O -0.490 6.490 10 N -0.235 5.235 11 C -0.454 4.454 12 H 0.071 0.929 13 C -0.215 4.215 14 N -0.579 5.579 15 Si 0.785 3.215 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.148 1.148 19 N -0.334 5.334 20 C 0.341 3.659 21 O -0.449 6.449 22 C -0.152 4.152 23 C -0.118 4.118 24 C -0.068 4.068 25 N -0.165 5.165 26 C -0.085 4.085 27 C 0.054 3.946 28 F -0.103 7.103 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.225 0.775 40 H 0.087 0.913 41 H 0.252 0.748 42 H 0.194 0.806 43 H 0.220 0.780 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -22.523 1.165 7.771 23.854 hybrid contribution 0.234 0.536 -2.069 2.150 sum -22.288 1.701 5.702 23.069 Atomic orbital electron populations 1.22073 0.92798 1.03616 1.02638 1.21103 0.94911 0.96527 0.83465 0.91836 1.22605 0.86069 1.03093 0.96194 1.61472 1.05694 1.11393 1.47084 1.22341 1.00325 0.89599 0.99649 1.21867 0.91150 1.00094 0.94507 1.20973 0.90183 0.81372 0.83570 1.90541 1.71698 1.54136 1.32589 1.42035 1.09234 1.45722 1.26543 1.18964 0.85553 1.29079 1.11763 0.92893 1.26120 0.96191 0.97348 1.01881 1.69812 1.09981 1.38453 1.39648 0.85369 0.80237 0.78312 0.77605 1.18594 1.20364 1.14795 1.45646 1.64935 1.14684 1.08142 1.18123 0.77860 0.86084 0.83879 1.90797 1.51823 1.16706 1.85596 1.20731 1.04490 0.96375 0.93633 1.22665 0.95151 0.91873 1.02144 1.23435 0.94411 1.02252 0.86678 1.67684 1.12697 1.07317 1.28833 1.23293 0.96352 0.90723 0.98171 1.19218 1.00457 0.79441 0.95465 1.91561 1.90028 1.32143 1.96575 0.93953 0.89642 0.90131 0.86876 0.91057 0.92508 0.93070 0.94545 0.85118 0.90397 0.77517 0.91294 0.74793 0.80612 0.78009 0.78746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.48 71.98 0.68 -1.43 16 2 C 0.14 2.67 2.35 44.99 0.11 2.78 16 3 H 0.06 1.56 6.23 -2.39 -0.01 1.54 16 4 C 0.05 0.73 4.52 86.30 0.39 1.12 16 5 N -0.53 -13.28 4.22 -927.07 -3.92 -17.20 16 6 C 0.03 0.87 8.96 127.69 1.14 2.01 16 7 C 0.05 1.39 5.45 85.56 0.47 1.86 16 8 C 0.45 18.65 7.48 87.66 0.66 19.30 16 9 O -0.61 -31.55 13.91 -3.06 -0.04 -31.60 16 10 N -0.59 -26.13 5.09 -306.99 -1.56 -27.69 16 11 C -0.32 -18.34 10.16 84.04 0.85 -17.48 16 12 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 13 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 14 N -0.94 -55.71 13.96 21.66 0.30 -55.41 16 15 Si 0.96 37.13 27.74 68.60 1.90 39.04 16 16 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.22 -6.98 6.52 99.48 0.65 -6.33 16 19 N -0.68 -14.00 4.76 -445.28 -2.12 -16.12 16 20 C 0.55 15.02 7.76 86.83 0.67 15.69 16 21 O -0.57 -19.79 15.14 -3.82 -0.06 -19.85 16 22 C -0.14 -3.36 5.91 -19.85 -0.12 -3.48 16 23 C -0.10 -1.69 9.61 22.63 0.22 -1.47 16 24 C 0.09 1.45 11.17 84.64 0.95 2.39 16 25 N -0.46 -9.20 10.33 -195.82 -2.02 -11.23 16 26 C 0.07 1.47 11.17 84.78 0.95 2.42 16 27 C 0.08 1.92 7.33 22.78 0.17 2.08 16 28 F -0.12 -3.66 15.72 44.97 0.71 -2.95 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 1.09 7.93 -2.39 -0.02 1.08 16 33 H 0.07 0.88 8.12 -2.38 -0.02 0.86 16 34 H 0.06 1.73 6.58 -2.39 -0.02 1.71 16 35 H 0.05 2.01 5.82 -2.39 -0.01 2.00 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.13 2.36 7.93 -2.39 -0.02 2.34 16 38 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 39 H 0.39 13.91 5.76 -92.71 -0.53 13.38 16 40 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.41 6.70 6.74 -92.71 -0.63 6.08 16 42 H 0.18 2.01 6.54 -2.91 -0.02 1.99 16 43 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -85.13 372.60 0.64 -84.49 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.15 Total: 33.17 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 7.60 Total: 25.34 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -9.32 Total: -127.64 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.10 Total: -51.44 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.71 Total: -2.95 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 1.90 Total: 39.04 kcal Total: -85.13 0.64 -84.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733033638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.048 kcal (2) G-P(sol) polarization free energy of solvation -85.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds