Wall clock time and date at job start Tue Mar 31 2020 20:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00232 * 2 1 4 4 C 1.50705 * 109.47333 * 180.02562 * 3 2 1 5 5 S 1.70445 * 124.59116 * 270.02881 * 4 3 2 6 6 C 1.75503 * 92.44606 * 179.97438 * 5 4 3 7 7 C 1.32767 * 110.57596 * 359.97438 * 6 5 4 8 8 C 1.36004 * 124.58970 * 89.72043 * 4 3 2 9 9 C 1.47192 * 123.46670 * 359.96403 * 8 4 3 10 10 O 1.21635 * 119.99462 * 353.66963 * 9 8 4 11 11 N 1.34770 * 120.00500 * 173.66172 * 9 8 4 12 12 C 1.47021 * 125.64779 * 4.91726 * 11 9 8 13 13 C 1.54335 * 107.26727 * 178.84906 * 12 11 9 14 14 C 1.55151 * 103.01915 * 338.14000 * 13 12 11 15 15 H 1.09008 * 111.03327 * 277.21871 * 14 13 12 16 16 C 1.52998 * 111.00502 * 153.38292 * 14 13 12 17 17 H 1.08999 * 109.47255 * 312.44884 * 16 14 13 18 18 C 1.52996 * 109.46998 * 192.44485 * 16 14 13 19 19 N 1.46504 * 109.47084 * 72.44580 * 16 14 13 20 20 C 1.36932 * 120.00074 * 204.99986 * 19 16 14 21 21 H 1.08007 * 120.00202 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00249 * 180.02562 * 20 19 16 23 23 N 1.31612 * 120.00226 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99673 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47338 * 90.00144 * 24 22 20 26 26 H 1.48507 * 109.46895 * 209.99960 * 24 22 20 27 27 H 1.48502 * 109.47292 * 329.99529 * 24 22 20 28 28 C 1.47428 * 125.64980 * 185.22068 * 11 9 8 29 29 H 1.09000 * 109.47067 * 60.00118 * 1 2 3 30 30 H 1.09000 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46958 * 300.00149 * 1 2 3 32 32 H 1.08999 * 109.47059 * 59.99940 * 3 2 1 33 33 H 1.08995 * 109.47144 * 299.99752 * 3 2 1 34 34 H 1.08002 * 124.71188 * 180.02562 * 6 5 4 35 35 H 1.08003 * 123.46278 * 179.97438 * 7 6 5 36 36 H 1.09010 * 109.88008 * 298.39103 * 12 11 9 37 37 H 1.09003 * 109.88610 * 59.55587 * 12 11 9 38 38 H 1.08997 * 110.84869 * 219.66934 * 13 12 11 39 39 H 1.08995 * 110.66598 * 96.52211 * 13 12 11 40 40 H 1.09002 * 109.47587 * 55.10058 * 18 16 14 41 41 H 1.09004 * 109.47028 * 175.09872 * 18 16 14 42 42 H 1.08999 * 109.47791 * 295.09651 * 18 16 14 43 43 H 0.97001 * 119.99965 * 25.00336 * 19 16 14 44 44 H 0.97003 * 120.00524 * 179.97438 * 23 22 20 45 45 H 1.08989 * 110.36460 * 322.93311 * 28 11 9 46 46 H 1.09001 * 110.36325 * 85.14511 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 16 4.4777 1.1090 1.4021 6 6 5.9587 0.9916 0.4677 7 6 5.6927 1.0127 -0.8329 8 6 4.2814 1.1202 -1.1206 9 6 3.7319 1.1565 -2.4856 10 8 2.5279 1.1338 -2.6573 11 7 4.5627 1.2149 -3.5452 12 6 6.0301 1.1458 -3.4883 13 6 6.5490 1.2231 -4.9397 14 6 5.3218 0.7707 -5.7742 15 1 5.2569 -0.3166 -5.8167 16 6 5.3644 1.3700 -7.1813 17 1 5.5807 2.4363 -7.1158 18 6 4.0106 1.1651 -7.8640 19 7 6.4109 0.7067 -7.9631 20 6 6.9928 1.3566 -9.0187 21 1 6.6805 2.3583 -9.2747 22 6 7.9840 0.7279 -9.7598 23 7 8.5428 1.3524 -10.7746 24 14 8.5236 -1.0049 -9.3175 25 1 7.6927 -1.9868 -10.0596 26 1 9.9512 -1.1874 -9.6838 27 1 8.3562 -1.2180 -7.8574 28 6 4.1507 1.3652 -4.9528 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.9488 0.9122 0.8917 35 1 6.4533 0.9528 -1.5973 36 1 6.4185 1.9832 -2.9085 37 1 6.3396 0.2037 -3.0356 38 1 7.3883 0.5437 -5.0884 39 1 6.8323 2.2447 -5.1930 40 1 3.2215 1.5830 -7.2389 41 1 4.0119 1.6673 -8.8315 42 1 3.8339 0.0993 -8.0082 43 1 6.6917 -0.1928 -7.7330 44 1 9.2357 0.9133 -11.2923 45 1 3.2336 0.8074 -5.1412 46 1 4.0103 2.4183 -5.1965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733525601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:28 Heat of formation + Delta-G solvation = -15.316056 kcal Electronic energy + Delta-G solvation = -27215.048866 eV Core-core repulsion = 23425.653709 eV Total energy + Delta-G solvation = -3789.395158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.50063 -38.55818 -37.65895 -36.89180 -35.41142 -32.48445 -31.43753 -30.78943 -29.81185 -28.14161 -27.37271 -26.02201 -24.56735 -23.52224 -23.14127 -21.34608 -20.73040 -19.84309 -19.26547 -17.79540 -17.57043 -16.75225 -16.47949 -16.21680 -15.76724 -15.57671 -15.10428 -14.79633 -14.41956 -14.15468 -13.82253 -13.63637 -13.42105 -13.20248 -13.03155 -12.66939 -12.57444 -12.46183 -12.44744 -12.18525 -12.08166 -11.85836 -11.65471 -11.60476 -11.11062 -10.99828 -10.86453 -10.58224 -10.45358 -10.24943 -10.15866 -9.94328 -9.61839 -9.59552 -9.27955 -8.95518 -8.78943 -8.58963 -7.29583 -5.78565 -3.14112 0.41931 1.18544 1.58878 1.74799 2.98265 3.16682 3.34643 3.38404 3.43935 3.69332 4.35378 4.44603 4.57075 4.62547 4.66720 4.74600 4.94465 4.98841 5.08872 5.11850 5.20331 5.22076 5.32831 5.39254 5.45614 5.46809 5.53822 5.60520 5.65123 5.70982 5.79606 5.86382 5.92525 5.94376 6.09991 6.15169 6.22805 6.36358 6.40205 6.48032 6.78341 6.87733 6.99746 7.45719 7.97478 8.10194 8.40390 9.18797 9.91315 10.11101 11.39830 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.002556 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.972765 B =10954.053207 C =11853.540527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.127 3.873 4 C -0.155 4.155 5 S 0.191 5.809 6 C -0.229 4.229 7 C -0.131 4.131 8 C -0.140 4.140 9 C 0.591 3.409 10 O -0.534 6.534 11 N -0.609 5.609 12 C 0.091 3.909 13 C -0.122 4.122 14 C -0.106 4.106 15 H 0.081 0.919 16 C 0.191 3.809 17 H 0.058 0.942 18 C -0.169 4.169 19 N -0.746 5.746 20 C -0.240 4.240 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 C 0.116 3.884 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.080 0.920 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 0.132 27.267 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C 0.049 3.951 4 C -0.275 4.275 5 S 0.458 5.542 6 C -0.364 4.364 7 C -0.160 4.160 8 C -0.158 4.158 9 C 0.379 3.621 10 O -0.413 6.413 11 N -0.343 5.343 12 C -0.032 4.032 13 C -0.160 4.160 14 C -0.126 4.126 15 H 0.099 0.901 16 C 0.081 3.919 17 H 0.076 0.924 18 C -0.229 4.229 19 N -0.389 5.389 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.714 3.286 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.203 1.203 28 C -0.006 4.006 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.188 0.812 35 H 0.188 0.812 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.501 0.154 28.621 30.487 hybrid contribution 0.781 -1.150 -1.385 1.962 sum -9.720 -0.997 27.237 28.936 Atomic orbital electron populations 1.22724 0.80595 1.02834 1.00049 1.87923 1.19868 1.26438 1.95447 1.20894 0.85872 0.86247 1.02044 1.24126 0.99996 1.06067 0.97358 1.82985 0.95384 1.68723 1.07134 1.25563 1.02424 1.11101 0.97295 1.22183 0.95355 1.01231 0.97190 1.20178 0.92962 1.09090 0.93526 1.17171 0.85382 0.76631 0.82878 1.90748 1.14095 1.50862 1.85596 1.48326 1.07030 1.71991 1.06917 1.22574 0.80253 1.01129 0.99241 1.22692 0.98324 1.03571 0.91438 1.22699 0.93371 1.00797 0.95758 0.90079 1.20102 0.88687 0.96177 0.86908 0.92367 1.22485 0.97874 1.01299 1.01239 1.42753 1.43855 1.16448 1.35872 1.19049 1.14421 0.99720 1.03831 0.89220 1.24659 0.98952 0.97808 0.97726 1.69694 1.29764 1.37480 1.21289 0.86566 0.77969 0.86194 0.77838 1.21189 1.21859 1.20344 1.22329 0.98481 1.01211 0.78581 0.93512 0.89545 0.94307 0.92781 0.88978 0.81163 0.81183 0.90795 0.90986 0.89664 0.89852 0.93952 0.92389 0.93394 0.80697 0.93082 0.90164 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.78 10.69 -35.23 -0.38 -5.15 16 3 C 0.13 1.45 5.56 36.01 0.20 1.65 16 4 C -0.16 -1.79 5.97 -35.11 -0.21 -2.00 16 5 S 0.19 1.61 22.97 -107.50 -2.47 -0.86 16 6 C -0.23 -1.83 11.12 28.86 0.32 -1.51 16 7 C -0.13 -1.27 8.86 -39.02 -0.35 -1.62 16 8 C -0.14 -1.73 5.96 -104.63 -0.62 -2.35 16 9 C 0.59 8.63 7.80 -12.63 -0.10 8.53 16 10 O -0.53 -9.11 14.39 5.25 0.08 -9.04 16 11 N -0.61 -8.07 3.33 -171.86 -0.57 -8.64 16 12 C 0.09 0.98 4.91 -3.06 -0.02 0.97 16 13 C -0.12 -1.57 6.36 -24.89 -0.16 -1.73 16 14 C -0.11 -1.54 2.69 -88.48 -0.24 -1.77 16 15 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 16 C 0.19 3.38 2.48 -67.93 -0.17 3.21 16 17 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16 18 C -0.17 -2.85 9.30 37.16 0.35 -2.50 16 19 N -0.75 -16.55 4.87 -53.43 -0.26 -16.81 16 20 C -0.24 -6.49 10.41 -15.06 -0.16 -6.65 16 21 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 23 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 24 Si 0.88 21.56 27.74 -169.99 -4.71 16.85 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.25 6.52 56.52 0.37 -5.89 16 28 C 0.12 1.59 5.05 -2.53 -0.01 1.58 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.18 6.12 -51.93 -0.32 0.87 16 34 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.17 1.39 3.80 -52.48 -0.20 1.19 16 36 H 0.07 0.68 6.79 -51.92 -0.35 0.33 16 37 H 0.07 0.70 6.78 -51.93 -0.35 0.35 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 40 H 0.04 0.60 6.85 -51.93 -0.36 0.25 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.36 7.91 5.66 -40.82 -0.23 7.68 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.08 1.16 7.80 -51.94 -0.40 0.75 16 46 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -33.33 378.90 -8.82 -42.16 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.85 Total: 6.56 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.14 Total: -2.74 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.06 Total: -53.48 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.30 Total: -14.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.47 Total: -0.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.33 -8.82 -42.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733525601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.843 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds