Wall clock time and date at job start Tue Mar 31 2020 20:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00232 * 2 1 4 4 C 1.50705 * 109.47333 * 180.02562 * 3 2 1 5 5 S 1.70445 * 124.59116 * 270.02881 * 4 3 2 6 6 C 1.75503 * 92.44606 * 179.97438 * 5 4 3 7 7 C 1.32767 * 110.57596 * 359.97438 * 6 5 4 8 8 C 1.36004 * 124.58970 * 89.72043 * 4 3 2 9 9 C 1.47192 * 123.46670 * 359.96403 * 8 4 3 10 10 O 1.21635 * 119.99462 * 353.66963 * 9 8 4 11 11 N 1.34770 * 120.00500 * 173.66172 * 9 8 4 12 12 C 1.47021 * 125.64779 * 4.91726 * 11 9 8 13 13 C 1.54335 * 107.26727 * 178.84906 * 12 11 9 14 14 C 1.55151 * 103.01915 * 338.14000 * 13 12 11 15 15 H 1.09008 * 111.03327 * 277.21871 * 14 13 12 16 16 C 1.52998 * 111.00502 * 153.38292 * 14 13 12 17 17 H 1.08999 * 109.47255 * 312.44884 * 16 14 13 18 18 C 1.52996 * 109.46998 * 192.44485 * 16 14 13 19 19 N 1.46504 * 109.47084 * 72.44580 * 16 14 13 20 20 C 1.36932 * 120.00074 * 204.99986 * 19 16 14 21 21 H 1.08007 * 120.00202 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00249 * 180.02562 * 20 19 16 23 23 N 1.31612 * 120.00226 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99673 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47338 * 90.00144 * 24 22 20 26 26 H 1.48507 * 109.46895 * 209.99960 * 24 22 20 27 27 H 1.48502 * 109.47292 * 329.99529 * 24 22 20 28 28 C 1.47428 * 125.64980 * 185.22068 * 11 9 8 29 29 H 1.09000 * 109.47067 * 60.00118 * 1 2 3 30 30 H 1.09000 * 109.47214 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46958 * 300.00149 * 1 2 3 32 32 H 1.08999 * 109.47059 * 59.99940 * 3 2 1 33 33 H 1.08995 * 109.47144 * 299.99752 * 3 2 1 34 34 H 1.08002 * 124.71188 * 180.02562 * 6 5 4 35 35 H 1.08003 * 123.46278 * 179.97438 * 7 6 5 36 36 H 1.09010 * 109.88008 * 298.39103 * 12 11 9 37 37 H 1.09003 * 109.88610 * 59.55587 * 12 11 9 38 38 H 1.08997 * 110.84869 * 219.66934 * 13 12 11 39 39 H 1.08995 * 110.66598 * 96.52211 * 13 12 11 40 40 H 1.09002 * 109.47587 * 55.10058 * 18 16 14 41 41 H 1.09004 * 109.47028 * 175.09872 * 18 16 14 42 42 H 1.08999 * 109.47791 * 295.09651 * 18 16 14 43 43 H 0.97001 * 119.99965 * 25.00336 * 19 16 14 44 44 H 0.97003 * 120.00524 * 179.97438 * 23 22 20 45 45 H 1.08989 * 110.36460 * 322.93311 * 28 11 9 46 46 H 1.09001 * 110.36325 * 85.14511 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 16 4.4777 1.1090 1.4021 6 6 5.9587 0.9916 0.4677 7 6 5.6927 1.0127 -0.8329 8 6 4.2814 1.1202 -1.1206 9 6 3.7319 1.1565 -2.4856 10 8 2.5279 1.1338 -2.6573 11 7 4.5627 1.2149 -3.5452 12 6 6.0301 1.1458 -3.4883 13 6 6.5490 1.2231 -4.9397 14 6 5.3218 0.7707 -5.7742 15 1 5.2569 -0.3166 -5.8167 16 6 5.3644 1.3700 -7.1813 17 1 5.5807 2.4363 -7.1158 18 6 4.0106 1.1651 -7.8640 19 7 6.4109 0.7067 -7.9631 20 6 6.9928 1.3566 -9.0187 21 1 6.6805 2.3583 -9.2747 22 6 7.9840 0.7279 -9.7598 23 7 8.5428 1.3524 -10.7746 24 14 8.5236 -1.0049 -9.3175 25 1 7.6927 -1.9868 -10.0596 26 1 9.9512 -1.1874 -9.6838 27 1 8.3562 -1.2180 -7.8574 28 6 4.1507 1.3652 -4.9528 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.9488 0.9122 0.8917 35 1 6.4533 0.9528 -1.5973 36 1 6.4185 1.9832 -2.9085 37 1 6.3396 0.2037 -3.0356 38 1 7.3883 0.5437 -5.0884 39 1 6.8323 2.2447 -5.1930 40 1 3.2215 1.5830 -7.2389 41 1 4.0119 1.6673 -8.8315 42 1 3.8339 0.0993 -8.0082 43 1 6.6917 -0.1928 -7.7330 44 1 9.2357 0.9133 -11.2923 45 1 3.2336 0.8074 -5.1412 46 1 4.0103 2.4183 -5.1965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733525601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:28 Heat of formation + Delta-G solvation = -37.551031 kcal Electronic energy + Delta-G solvation = -27216.013047 eV Core-core repulsion = 23425.653709 eV Total energy + Delta-G solvation = -3790.359339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50510 -39.57305 -38.65976 -37.73356 -36.92876 -34.29604 -32.34768 -32.12294 -31.18381 -29.34717 -28.23801 -26.91497 -25.98344 -24.70337 -24.20489 -22.73121 -21.54619 -21.28366 -20.22771 -19.48453 -18.53738 -17.68303 -17.42962 -17.28614 -16.74619 -16.60279 -16.38680 -15.93276 -15.53037 -15.27034 -15.03711 -14.94746 -14.70932 -14.31191 -14.15971 -13.94010 -13.76843 -13.65207 -13.46534 -13.37181 -13.21550 -12.95169 -12.85020 -12.68206 -12.43264 -12.35972 -12.01927 -11.90852 -11.88104 -11.71379 -11.56434 -11.34749 -11.10633 -10.93589 -10.53126 -10.03564 -9.67081 -9.38803 -9.28384 -7.97442 -5.30239 -0.36686 0.50016 0.91049 0.99021 1.40681 1.44496 1.51558 1.98192 2.20767 2.52624 2.92851 3.29843 3.36368 3.60468 3.63521 3.70041 3.81862 3.93361 4.04273 4.25196 4.27516 4.32922 4.43028 4.46561 4.47949 4.51003 4.56356 4.61036 4.63523 4.69776 4.79516 4.86060 4.87625 4.93649 5.01413 5.05055 5.15956 5.18713 5.25226 5.32999 5.36075 5.56485 5.82731 6.10076 6.26323 6.44465 7.05874 7.13086 7.88952 8.08580 9.24282 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.002556 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.972765 B =10954.053207 C =11853.540527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.127 3.873 4 C -0.182 4.182 5 S 0.239 5.761 6 C -0.218 4.218 7 C -0.144 4.144 8 C -0.162 4.162 9 C 0.583 3.417 10 O -0.571 6.571 11 N -0.610 5.610 12 C 0.095 3.905 13 C -0.120 4.120 14 C -0.097 4.097 15 H 0.083 0.917 16 C 0.188 3.812 17 H 0.050 0.950 18 C -0.163 4.163 19 N -0.746 5.746 20 C -0.220 4.220 21 H 0.056 0.944 22 C -0.066 4.066 23 N -0.987 5.987 24 Si 0.952 3.048 25 H -0.286 1.286 26 H -0.300 1.300 27 H -0.244 1.244 28 C 0.121 3.879 29 H 0.037 0.963 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.204 0.796 35 H 0.185 0.815 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.365 0.635 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.044 -1.125 30.827 32.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.049 3.951 4 C -0.303 4.303 5 S 0.507 5.493 6 C -0.353 4.353 7 C -0.171 4.171 8 C -0.181 4.181 9 C 0.373 3.627 10 O -0.453 6.453 11 N -0.343 5.343 12 C -0.027 4.027 13 C -0.158 4.158 14 C -0.117 4.117 15 H 0.101 0.899 16 C 0.080 3.920 17 H 0.068 0.932 18 C -0.222 4.222 19 N -0.389 5.389 20 C -0.351 4.351 21 H 0.074 0.926 22 C -0.257 4.257 23 N -0.638 5.638 24 Si 0.780 3.220 25 H -0.213 1.213 26 H -0.227 1.227 27 H -0.168 1.168 28 C -0.002 4.002 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.221 0.779 35 H 0.202 0.798 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.199 0.801 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.853 -1.102 32.242 33.732 hybrid contribution 0.465 -0.655 -2.421 2.551 sum -9.389 -1.757 29.820 31.313 Atomic orbital electron populations 1.22886 0.79201 1.03824 1.00712 1.87871 1.21582 1.27303 1.95583 1.20890 0.86337 0.85850 1.02026 1.24403 1.00438 1.06479 0.98938 1.82810 0.94576 1.66937 1.05005 1.26003 1.03710 1.08904 0.96726 1.22234 0.94153 1.02344 0.98354 1.20229 0.94578 1.10967 0.92353 1.17630 0.85087 0.76025 0.83971 1.90724 1.15661 1.52656 1.86256 1.48363 1.08064 1.71552 1.06292 1.22702 0.78633 1.03151 0.98164 1.22674 0.97558 1.03182 0.92395 1.22487 0.94898 1.00584 0.93742 0.89881 1.20253 0.87681 0.95661 0.88450 0.93228 1.22379 0.98221 1.01238 1.00397 1.42714 1.44530 1.16589 1.35103 1.18978 1.13442 0.98368 1.04329 0.92631 1.25459 0.99759 1.02436 0.98048 1.69883 1.31047 1.39672 1.23212 0.85447 0.76660 0.80484 0.79396 1.21280 1.22683 1.16795 1.22180 0.97701 1.01058 0.79236 0.94423 0.88453 0.92032 0.90446 0.91339 0.77880 0.79836 0.88559 0.89088 0.89396 0.90439 0.91316 0.94750 0.93290 0.80147 0.93550 0.91073 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -10.07 10.69 -148.98 -1.59 -11.66 16 3 C 0.13 2.84 5.56 71.24 0.40 3.24 16 4 C -0.18 -3.95 5.97 25.17 0.15 -3.80 16 5 S 0.24 3.30 22.97 -56.49 -1.30 2.01 16 6 C -0.22 -2.61 11.12 66.64 0.74 -1.87 16 7 C -0.14 -2.32 8.86 22.67 0.20 -2.12 16 8 C -0.16 -3.79 5.96 -19.87 -0.12 -3.91 16 9 C 0.58 16.71 7.80 86.60 0.68 17.39 16 10 O -0.57 -19.92 14.39 -4.14 -0.06 -19.98 16 11 N -0.61 -15.31 3.33 -815.90 -2.71 -18.02 16 12 C 0.10 1.79 4.91 86.73 0.43 2.22 16 13 C -0.12 -2.80 6.36 31.78 0.20 -2.60 16 14 C -0.10 -2.66 2.69 -9.40 -0.03 -2.68 16 15 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 16 C 0.19 6.54 2.48 44.99 0.11 6.65 16 17 H 0.05 1.83 7.92 -2.39 -0.02 1.81 16 18 C -0.16 -5.42 9.30 71.98 0.67 -4.76 16 19 N -0.75 -32.48 4.87 -322.94 -1.57 -34.05 16 20 C -0.22 -12.05 10.41 84.03 0.87 -11.17 16 21 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 22 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.99 -62.57 13.97 21.65 0.30 -62.27 16 24 Si 0.95 44.26 27.74 68.60 1.90 46.16 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.24 -9.86 6.52 99.48 0.65 -9.21 16 28 C 0.12 3.19 5.05 86.85 0.44 3.63 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.83 6.12 -2.39 -0.01 1.82 16 34 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.19 2.29 3.80 -2.91 -0.01 2.28 16 36 H 0.10 1.44 6.79 -2.38 -0.02 1.42 16 37 H 0.09 1.43 6.78 -2.39 -0.02 1.41 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 1.91 7.92 -2.39 -0.02 1.89 16 40 H 0.07 1.91 6.85 -2.39 -0.02 1.90 16 41 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.37 15.24 5.66 -92.71 -0.52 14.72 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.07 2.01 7.80 -2.39 -0.02 2.00 16 46 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 Total: -1.00 -74.84 378.90 1.84 -73.00 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.41 Total: 26.16 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.46 Total: -1.34 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.98 Total: -114.34 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.65 Total: -31.64 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.30 Total: 2.01 kcal Total: -74.84 1.84 -73.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733525601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.447 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds