Wall clock time and date at job start Tue Mar 31 2020 20:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.50697 * 109.46908 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00522 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99988 * 180.02562 * 6 5 4 9 9 C 1.37094 * 120.00145 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99696 * 359.97438 * 9 8 6 11 11 C 1.38952 * 120.00073 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99612 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00207 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46718 * 59.99961 * 13 11 9 15 15 H 1.48501 * 109.47084 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47029 * 300.00433 * 13 11 9 17 17 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 18 18 H 1.08996 * 109.47729 * 184.99759 * 17 2 1 19 19 C 1.53001 * 109.47279 * 65.00040 * 17 2 1 20 20 N 1.46496 * 109.47128 * 305.00336 * 17 2 1 21 21 C 1.34781 * 120.00209 * 204.99948 * 20 17 2 22 22 O 1.21537 * 119.99589 * 359.97438 * 21 20 17 23 23 C 1.47994 * 120.00185 * 180.02562 * 21 20 17 24 24 C 1.39897 * 120.94581 * 359.97438 * 23 21 20 25 25 C 1.38031 * 119.03862 * 179.97438 * 24 23 21 26 26 N 1.31864 * 120.98315 * 0.02562 * 25 24 23 27 27 C 1.31713 * 122.09364 * 359.97438 * 26 25 24 28 28 C 1.38538 * 120.84879 * 359.74075 * 27 26 25 29 29 F 1.35099 * 120.54268 * 180.28619 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.00896 * 110.99793 * 208.95333 * 4 2 1 34 34 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 35 35 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 36 36 H 0.97005 * 119.99644 * 359.97438 * 8 6 5 37 37 H 0.97005 * 119.99274 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47832 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.46924 * 300.00271 * 19 17 2 40 40 H 1.09000 * 109.47104 * 59.99686 * 19 17 2 41 41 H 0.96999 * 120.00528 * 24.99813 * 20 17 2 42 42 H 1.08004 * 120.47896 * 359.96336 * 24 23 21 43 43 H 1.08003 * 119.51101 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.57783 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5216 -3.5560 7 8 2.8678 -1.6985 -3.4703 8 7 2.7283 0.1207 -4.7325 9 6 3.1881 -0.5563 -5.8324 10 1 3.4378 -1.6042 -5.7560 11 6 3.3329 0.1058 -7.0454 12 7 3.0286 1.3808 -7.1384 13 14 3.9601 -0.8164 -8.5439 14 1 3.0392 -1.9389 -8.8555 15 1 4.0228 0.1085 -9.7040 16 1 5.3164 -1.3523 -8.2634 17 6 2.0400 -0.7212 1.2491 18 1 3.1263 -0.6444 1.2951 19 6 1.6353 -2.1955 1.1879 20 7 1.4559 -0.1037 2.4423 21 6 2.0913 -0.1939 3.6275 22 8 3.1487 -0.7878 3.7064 23 6 1.5009 0.4294 4.8329 24 6 0.2846 1.1173 4.7648 25 6 -0.2304 1.6831 5.9136 26 7 0.4065 1.5834 7.0639 27 6 1.5536 0.9457 7.1756 28 6 2.1411 0.3424 6.0756 29 9 3.3150 -0.3150 6.1984 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.9173 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 2.5044 1.0621 -4.8010 37 1 3.1293 1.8429 -7.9853 38 1 1.9983 -2.7093 2.0779 39 1 0.5490 -2.2724 1.1420 40 1 2.0699 -2.6549 0.3001 41 1 0.6118 0.3700 2.3794 42 1 -0.2436 1.2045 3.8267 43 1 -1.1687 2.2163 5.8696 44 1 2.0402 0.8886 8.1381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733966260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:18 Heat of formation + Delta-G solvation = -72.458656 kcal Electronic energy + Delta-G solvation = -28273.505173 eV Core-core repulsion = 23947.711701 eV Total energy + Delta-G solvation = -4325.793472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.38137 -41.03643 -39.82895 -38.49166 -37.39909 -34.68697 -33.90118 -33.33308 -31.50864 -31.30731 -30.81469 -29.23910 -26.64124 -25.80829 -24.65132 -24.11654 -23.37627 -21.34092 -20.01218 -19.39768 -18.83099 -17.97427 -17.78830 -17.77178 -16.46687 -16.38482 -16.24191 -15.80631 -15.63057 -15.10599 -15.00479 -14.92311 -14.48319 -14.33463 -14.03168 -13.96026 -13.88213 -13.75365 -13.25432 -12.89511 -12.71254 -12.60051 -12.29095 -12.12348 -11.87746 -11.64553 -11.48579 -11.13744 -10.98844 -10.80631 -10.76924 -10.55441 -10.45779 -10.23435 -10.10116 -9.61423 -9.52217 -9.44595 -8.51200 -8.17536 -7.98762 -6.43914 -3.84769 -0.03978 0.26379 2.37422 2.52278 3.10580 3.18856 3.24700 3.29164 3.35402 3.77908 3.87056 3.90290 4.01066 4.05581 4.13821 4.27831 4.47881 4.68050 4.76135 4.95513 5.04833 5.07762 5.11043 5.13505 5.22520 5.31869 5.47077 5.48208 5.62832 5.71076 5.83998 5.86088 5.88745 5.90589 6.04638 6.22160 6.24633 6.35166 6.98154 7.11240 7.12224 7.52861 7.53293 7.71940 8.03539 8.58519 9.15499 9.51459 10.02723 10.73670 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.001798 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.590797 B =15572.459877 C =15925.526741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.049 0.951 4 N -0.656 5.656 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 C 0.141 3.859 18 H 0.090 0.910 19 C -0.158 4.158 20 N -0.712 5.712 21 C 0.556 3.444 22 O -0.513 6.513 23 C -0.125 4.125 24 C -0.112 4.112 25 C 0.084 3.916 26 N -0.441 5.441 27 C 0.072 3.928 28 C 0.107 3.893 29 F -0.104 7.104 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.352 0.648 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.399 0.601 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 4.324 25.797 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.067 0.933 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.037 3.963 18 H 0.108 0.892 19 C -0.216 4.216 20 N -0.366 5.366 21 C 0.341 3.659 22 O -0.388 6.388 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.072 4.072 26 N -0.150 5.150 27 C -0.087 4.087 28 C 0.084 3.916 29 F -0.082 7.082 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.173 0.827 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.237 0.763 42 H 0.167 0.833 43 H 0.189 0.811 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.759 3.327 26.260 27.881 hybrid contribution 1.017 0.602 -1.450 1.871 sum -7.742 3.929 24.809 26.284 Atomic orbital electron populations 1.21895 0.94419 1.03047 1.00888 1.21721 0.96584 0.95965 0.89209 0.93350 1.60196 1.35031 1.31664 1.02091 1.21738 1.01372 0.93874 0.91220 1.19763 0.85068 0.88207 0.84408 1.90528 1.55295 1.16104 1.84714 1.41853 1.57711 1.12407 1.07981 1.19656 1.40054 0.96445 0.86799 0.87942 1.25268 0.97620 0.95790 0.99264 1.69608 1.48572 1.08860 1.27281 0.85908 0.79443 0.78831 0.79986 1.19874 1.20978 1.19900 1.21172 0.98874 0.93609 0.82626 0.89170 1.22135 1.02197 0.94315 1.02980 1.46029 1.25820 1.56803 1.07955 1.17895 0.84725 0.80473 0.82850 1.90880 1.21430 1.41389 1.85075 1.20652 0.97036 1.02031 0.93982 1.22355 0.93931 0.95728 1.01269 1.22853 0.99959 0.97291 0.87084 1.67611 1.06706 1.13143 1.27509 1.23044 0.92556 0.94914 0.98235 1.18930 0.83876 0.94743 0.94083 1.91640 1.42993 1.77326 1.96234 0.93457 0.91006 0.91819 0.82734 0.89502 0.93774 0.77478 0.91813 0.92757 0.92016 0.89678 0.76348 0.83323 0.81094 0.80710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.93 37.16 0.33 -0.97 16 2 C 0.08 0.82 2.66 -67.71 -0.18 0.64 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 4 N -0.66 -9.67 5.14 -108.00 -0.55 -10.22 16 5 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 6 C 0.44 10.11 7.82 -10.98 -0.09 10.03 16 7 O -0.58 -15.48 15.78 5.55 0.09 -15.39 16 8 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 9 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 10 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 11 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 12 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 13 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.14 1.50 2.30 -67.94 -0.16 1.35 16 18 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 19 C -0.16 -1.78 9.02 37.16 0.34 -1.44 16 20 N -0.71 -6.15 4.95 -54.71 -0.27 -6.42 16 21 C 0.56 6.06 7.76 -12.26 -0.10 5.96 16 22 O -0.51 -7.71 15.15 5.33 0.08 -7.63 16 23 C -0.13 -1.07 5.91 -104.60 -0.62 -1.69 16 24 C -0.11 -0.58 9.61 -39.04 -0.38 -0.95 16 25 C 0.08 0.42 11.17 -17.61 -0.20 0.23 16 26 N -0.44 -3.15 10.33 -13.25 -0.14 -3.29 16 27 C 0.07 0.51 11.17 -17.49 -0.20 0.31 16 28 C 0.11 0.97 7.33 -38.79 -0.28 0.68 16 29 F -0.10 -1.19 15.72 2.25 0.04 -1.15 16 30 H 0.05 0.28 6.29 -51.93 -0.33 -0.05 16 31 H 0.07 0.71 6.57 -51.93 -0.34 0.37 16 32 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 33 H 0.35 5.54 7.62 -39.29 -0.30 5.24 16 34 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 35 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 40 H 0.08 1.08 7.17 -51.93 -0.37 0.71 16 41 H 0.40 2.27 4.72 -40.82 -0.19 2.07 16 42 H 0.15 0.30 6.54 -52.48 -0.34 -0.04 16 43 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 44 H 0.18 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -34.35 372.49 -6.60 -40.95 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.31 Total: 12.25 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.79 Total: 7.02 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.30 Total: -57.58 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.35 -6.60 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.505 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds