Wall clock time and date at job start Tue Mar 31 2020 20:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 C 1.50697 * 109.46908 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00522 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99988 * 180.02562 * 6 5 4 9 9 C 1.37094 * 120.00145 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99696 * 359.97438 * 9 8 6 11 11 C 1.38952 * 120.00073 * 179.97438 * 9 8 6 12 12 N 1.31416 * 119.99612 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00207 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46718 * 59.99961 * 13 11 9 15 15 H 1.48501 * 109.47084 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47029 * 300.00433 * 13 11 9 17 17 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 18 18 H 1.08996 * 109.47729 * 184.99759 * 17 2 1 19 19 C 1.53001 * 109.47279 * 65.00040 * 17 2 1 20 20 N 1.46496 * 109.47128 * 305.00336 * 17 2 1 21 21 C 1.34781 * 120.00209 * 204.99948 * 20 17 2 22 22 O 1.21537 * 119.99589 * 359.97438 * 21 20 17 23 23 C 1.47994 * 120.00185 * 180.02562 * 21 20 17 24 24 C 1.39897 * 120.94581 * 359.97438 * 23 21 20 25 25 C 1.38031 * 119.03862 * 179.97438 * 24 23 21 26 26 N 1.31864 * 120.98315 * 0.02562 * 25 24 23 27 27 C 1.31713 * 122.09364 * 359.97438 * 26 25 24 28 28 C 1.38538 * 120.84879 * 359.74075 * 27 26 25 29 29 F 1.35099 * 120.54268 * 180.28619 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.00896 * 110.99793 * 208.95333 * 4 2 1 34 34 H 1.09005 * 109.47066 * 299.99968 * 5 4 2 35 35 H 1.09001 * 109.47085 * 59.99954 * 5 4 2 36 36 H 0.97005 * 119.99644 * 359.97438 * 8 6 5 37 37 H 0.97005 * 119.99274 * 180.02562 * 12 11 9 38 38 H 1.08993 * 109.47832 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.46924 * 300.00271 * 19 17 2 40 40 H 1.09000 * 109.47104 * 59.99686 * 19 17 2 41 41 H 0.96999 * 120.00528 * 24.99813 * 20 17 2 42 42 H 1.08004 * 120.47896 * 359.96336 * 24 23 21 43 43 H 1.08003 * 119.51101 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.57783 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5216 -3.5560 7 8 2.8678 -1.6985 -3.4703 8 7 2.7283 0.1207 -4.7325 9 6 3.1881 -0.5563 -5.8324 10 1 3.4378 -1.6042 -5.7560 11 6 3.3329 0.1058 -7.0454 12 7 3.0286 1.3808 -7.1384 13 14 3.9601 -0.8164 -8.5439 14 1 3.0392 -1.9389 -8.8555 15 1 4.0228 0.1085 -9.7040 16 1 5.3164 -1.3523 -8.2634 17 6 2.0400 -0.7212 1.2491 18 1 3.1263 -0.6444 1.2951 19 6 1.6353 -2.1955 1.1879 20 7 1.4559 -0.1037 2.4423 21 6 2.0913 -0.1939 3.6275 22 8 3.1487 -0.7878 3.7064 23 6 1.5009 0.4294 4.8329 24 6 0.2846 1.1173 4.7648 25 6 -0.2304 1.6831 5.9136 26 7 0.4065 1.5834 7.0639 27 6 1.5536 0.9457 7.1756 28 6 2.1411 0.3424 6.0756 29 9 3.3150 -0.3150 6.1984 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 2.9173 -1.1204 -1.0288 34 1 1.0870 0.6164 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 2.5044 1.0621 -4.8010 37 1 3.1293 1.8429 -7.9853 38 1 1.9983 -2.7093 2.0779 39 1 0.5490 -2.2724 1.1420 40 1 2.0699 -2.6549 0.3001 41 1 0.6118 0.3700 2.3794 42 1 -0.2436 1.2045 3.8267 43 1 -1.1687 2.2163 5.8696 44 1 2.0402 0.8886 8.1381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733966260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:17 Heat of formation + Delta-G solvation = -99.519545 kcal Electronic energy + Delta-G solvation = -28274.678621 eV Core-core repulsion = 23947.711701 eV Total energy + Delta-G solvation = -4326.966920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.09327 -41.70653 -40.58050 -40.11123 -38.56328 -36.08622 -35.49449 -34.05154 -33.25922 -32.03039 -31.80479 -30.10429 -28.14784 -26.50585 -26.09478 -24.92085 -24.23699 -22.13911 -21.12579 -20.88238 -19.94426 -19.56267 -18.48887 -18.41029 -17.72977 -17.22259 -17.06261 -16.96566 -16.69911 -16.42048 -16.12636 -15.86111 -15.62165 -15.41943 -15.29640 -15.02819 -14.66300 -14.50160 -14.40290 -14.25628 -13.72119 -13.52903 -13.43001 -13.20068 -13.09697 -13.08671 -12.84053 -12.54314 -12.42724 -12.12748 -11.97544 -11.71189 -11.56336 -11.49855 -11.14175 -10.71653 -10.37723 -10.27519 -10.11076 -10.01152 -9.38303 -8.46544 -5.94949 -0.62897 -0.20288 1.39773 1.41832 1.52414 1.64070 1.73560 2.06206 2.29531 2.56970 2.82159 2.92300 3.20898 3.29717 3.39187 3.49092 3.53168 3.61970 3.65788 3.90868 4.15576 4.27587 4.30725 4.42290 4.46568 4.51227 4.58636 4.62122 4.64228 4.73635 4.76009 4.83292 4.93837 5.04905 5.23507 5.33968 5.41114 5.43015 5.51585 5.87774 6.08630 6.29170 6.31841 6.60547 6.65408 6.96436 7.13071 7.56922 8.12451 8.70497 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.001798 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.590797 B =15572.459877 C =15925.526741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.062 0.938 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.149 3.851 18 H 0.067 0.933 19 C -0.151 4.151 20 N -0.692 5.692 21 C 0.554 3.446 22 O -0.564 6.564 23 C -0.140 4.140 24 C -0.095 4.095 25 C 0.093 3.907 26 N -0.457 5.457 27 C 0.074 3.926 28 C 0.076 3.924 29 F -0.128 7.128 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.343 0.657 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.417 0.583 42 H 0.187 0.813 43 H 0.210 0.790 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 6.254 26.273 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.080 0.920 4 N -0.302 5.302 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.199 1.199 17 C 0.044 3.956 18 H 0.085 0.915 19 C -0.209 4.209 20 N -0.347 5.347 21 C 0.340 3.660 22 O -0.443 6.443 23 C -0.152 4.152 24 C -0.116 4.116 25 C -0.063 4.063 26 N -0.165 5.165 27 C -0.084 4.084 28 C 0.053 3.947 29 F -0.106 7.106 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.258 0.742 42 H 0.204 0.796 43 H 0.227 0.773 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.288 5.304 26.753 29.517 hybrid contribution 1.705 0.026 -1.528 2.290 sum -9.583 5.330 25.225 27.505 Atomic orbital electron populations 1.21932 0.92409 1.03133 1.02731 1.21781 0.97926 0.95937 0.87207 0.92040 1.60237 1.34635 1.32093 1.03221 1.21590 1.02571 0.93543 0.88894 1.20901 0.83203 0.87997 0.85447 1.90500 1.56588 1.18270 1.85587 1.41921 1.58319 1.12576 1.08231 1.19617 1.42180 0.95955 0.88624 0.90394 1.26019 0.97270 0.96639 1.01335 1.69664 1.48569 1.09615 1.28166 0.85007 0.78665 0.77860 0.76922 1.19736 1.19462 1.19858 1.20922 0.97794 0.93415 0.83486 0.91459 1.22043 1.02903 0.94579 1.01413 1.45776 1.26115 1.56152 1.06690 1.18299 0.84109 0.79731 0.83829 1.90858 1.23806 1.43760 1.85870 1.20615 0.98595 1.03386 0.92613 1.22737 0.92166 0.93629 1.03023 1.23549 1.00596 0.96048 0.86147 1.67703 1.06692 1.13375 1.28776 1.23253 0.92567 0.94245 0.98317 1.19285 0.83850 0.96196 0.95326 1.91572 1.44476 1.78151 1.96421 0.89542 0.91826 0.92098 0.83812 0.87212 0.91663 0.76930 0.91306 0.94022 0.90494 0.91564 0.74220 0.79596 0.77297 0.79121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.93 71.98 0.64 -1.43 16 2 C 0.08 1.57 2.66 44.91 0.12 1.69 16 3 H 0.06 1.09 7.80 -2.39 -0.02 1.07 16 4 N -0.67 -19.13 5.14 -495.59 -2.55 -21.67 16 5 C 0.07 2.11 5.96 85.56 0.51 2.62 16 6 C 0.44 20.24 7.82 87.66 0.69 20.93 16 7 O -0.62 -34.03 15.78 -3.05 -0.05 -34.08 16 8 N -0.57 -28.89 5.29 -306.99 -1.62 -30.51 16 9 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 10 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 12 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 13 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 17 C 0.15 3.04 2.30 44.99 0.10 3.14 16 18 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 19 C -0.15 -3.39 9.02 71.98 0.65 -2.74 16 20 N -0.69 -10.55 4.95 -445.28 -2.20 -12.75 16 21 C 0.55 11.80 7.76 86.83 0.67 12.48 16 22 O -0.56 -17.77 15.15 -3.83 -0.06 -17.83 16 23 C -0.14 -2.22 5.91 -19.85 -0.12 -2.34 16 24 C -0.10 -0.62 9.61 22.62 0.22 -0.40 16 25 C 0.09 0.57 11.17 84.64 0.95 1.51 16 26 N -0.46 -5.41 10.33 -195.82 -2.02 -7.43 16 27 C 0.07 0.98 11.17 84.78 0.95 1.93 16 28 C 0.08 1.39 7.33 22.78 0.17 1.56 16 29 F -0.13 -3.14 15.72 44.97 0.71 -2.43 16 30 H 0.09 0.55 6.29 -2.39 -0.02 0.53 16 31 H 0.06 1.06 6.57 -2.39 -0.02 1.04 16 32 H 0.06 0.96 7.45 -2.38 -0.02 0.94 16 33 H 0.34 10.94 7.62 -89.70 -0.68 10.26 16 34 H 0.11 3.03 7.44 -2.38 -0.02 3.01 16 35 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 36 H 0.40 18.86 7.90 -92.70 -0.73 18.13 16 37 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.46 6.57 -2.39 -0.02 1.45 16 40 H 0.07 1.74 7.17 -2.39 -0.02 1.73 16 41 H 0.42 3.02 4.72 -92.71 -0.44 2.58 16 42 H 0.19 -0.31 6.54 -2.91 -0.02 -0.33 16 43 H 0.21 -0.38 8.06 -2.91 -0.02 -0.40 16 44 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -78.79 372.49 0.58 -78.21 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.76 Total: 31.79 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.82 Total: 20.69 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -8.11 Total: -121.15 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.11 Total: -51.91 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.71 Total: -2.43 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -78.79 0.58 -78.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.310 kcal (2) G-P(sol) polarization free energy of solvation -78.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds