Wall clock time and date at job start Tue Mar 31 2020 20:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47111 * 2 1 4 4 N 1.46503 * 109.46980 * 119.99334 * 2 1 3 5 5 C 1.34773 * 120.00246 * 275.00301 * 4 2 1 6 6 O 1.21525 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.48005 * 119.99867 * 180.02562 * 5 4 2 8 8 C 1.39895 * 120.93971 * 359.97438 * 7 5 4 9 9 C 1.38045 * 119.03190 * 180.02562 * 8 7 5 10 10 N 1.31859 * 120.98350 * 0.02562 * 9 8 7 11 11 C 1.31716 * 122.09186 * 359.97438 * 10 9 8 12 12 C 1.38539 * 120.85209 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.54014 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47035 * 239.99595 * 2 1 3 15 15 H 1.08994 * 109.46919 * 299.99761 * 14 2 1 16 16 C 1.53002 * 109.46843 * 180.02562 * 14 2 1 17 17 N 1.46894 * 109.47077 * 60.00326 * 14 2 1 18 18 C 1.46897 * 110.99789 * 204.99927 * 17 14 2 19 19 C 1.50700 * 109.46976 * 179.97438 * 18 17 14 20 20 O 1.21298 * 120.00434 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00153 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00174 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00121 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99737 * 180.02562 * 22 21 19 25 25 N 1.31402 * 120.00129 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99790 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47015 * 59.99711 * 26 24 22 28 28 H 1.48491 * 109.47034 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46775 * 299.99849 * 26 24 22 30 30 H 1.09002 * 109.47054 * 59.99921 * 1 2 3 31 31 H 1.08991 * 109.47308 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47222 * 300.00813 * 1 2 3 33 33 H 0.97001 * 119.99715 * 95.00044 * 4 2 1 34 34 H 1.07999 * 120.48890 * 0.04785 * 8 7 5 35 35 H 1.08005 * 119.50429 * 179.72485 * 9 8 7 36 36 H 1.08002 * 119.57433 * 179.97438 * 11 10 9 37 37 H 1.09007 * 109.47139 * 299.99583 * 16 14 2 38 38 H 1.09001 * 109.47368 * 59.99830 * 16 14 2 39 39 H 1.08998 * 109.46885 * 180.02562 * 16 14 2 40 40 H 1.00903 * 111.00129 * 328.95500 * 17 14 2 41 41 H 1.08999 * 109.47219 * 299.99974 * 18 17 14 42 42 H 1.08994 * 109.47296 * 60.00132 * 18 17 14 43 43 H 0.97006 * 119.99545 * 359.97438 * 21 19 18 44 44 H 0.97005 * 120.00302 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8584 1.1611 2.4116 7 6 2.6408 -0.7156 3.5655 8 6 2.9792 -2.0724 3.5250 9 6 3.4353 -2.6838 4.6756 10 7 3.5537 -2.0084 5.8019 11 6 3.2471 -0.7303 5.8870 12 6 2.7815 -0.0362 4.7821 13 9 2.4684 1.2746 4.8766 14 6 2.0400 -0.7213 -1.2492 15 1 1.6767 -1.7490 -1.2491 16 6 3.5700 -0.7219 -1.2488 17 7 1.5504 -0.0289 -2.4486 18 6 1.4876 -0.9441 -3.5960 19 6 0.9816 -0.2000 -4.8049 20 8 0.7013 0.9770 -4.7192 21 7 0.8414 -0.8421 -5.9815 22 6 0.3816 -0.1651 -7.0814 23 1 0.1313 0.8827 -7.0049 24 6 0.2366 -0.8274 -8.2944 25 7 0.5407 -2.1023 -8.3873 26 14 -0.3906 0.0950 -9.7929 27 1 0.5305 1.2174 -10.1047 28 1 -0.4535 -0.8300 -10.9529 29 1 -1.7468 0.6309 -9.5124 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.8853 -2.6334 2.6069 35 1 3.6945 -3.7320 4.6541 36 1 3.3592 -0.2169 6.8305 37 1 3.9337 0.3057 -1.2487 38 1 3.9330 -1.2359 -0.3588 39 1 3.9333 -1.2354 -2.1390 40 1 0.6527 0.3992 -2.2780 41 1 2.4830 -1.3378 -3.8016 42 1 0.8112 -1.7676 -3.3673 43 1 1.0666 -1.7832 -6.0503 44 1 0.4399 -2.5646 -9.2342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733966262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:21 Heat of formation + Delta-G solvation = -74.089751 kcal Electronic energy + Delta-G solvation = -28270.409628 eV Core-core repulsion = 23944.545427 eV Total energy + Delta-G solvation = -4325.864201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.38118 -41.03214 -39.81659 -38.49569 -37.34021 -34.69539 -33.90498 -33.33037 -31.50500 -31.29755 -30.65519 -29.92642 -26.50313 -25.69431 -24.36436 -24.12518 -23.20756 -21.17483 -20.71191 -19.37817 -18.77240 -17.99315 -17.79183 -17.77597 -16.49938 -16.47799 -16.30228 -15.85295 -15.45223 -15.16838 -14.97768 -14.65059 -14.48379 -14.16683 -14.04543 -13.93679 -13.86651 -13.71251 -13.60733 -13.08179 -12.70808 -12.53351 -12.44603 -11.99311 -11.77480 -11.66303 -11.50428 -11.40808 -11.04848 -10.79609 -10.72235 -10.55550 -10.45964 -10.23698 -10.10377 -9.61609 -9.52573 -9.46877 -8.50369 -8.16339 -7.99087 -6.44242 -3.85059 -0.03957 0.26312 2.37349 2.50401 3.10524 3.18665 3.24515 3.29044 3.35347 3.77868 3.86648 3.89713 4.01022 4.06319 4.13685 4.27743 4.48168 4.68221 4.74103 4.95743 5.02023 5.07426 5.10381 5.13297 5.22007 5.27252 5.38562 5.53637 5.58621 5.71294 5.76627 5.86692 5.88631 5.91123 6.04596 6.08829 6.18830 6.28603 6.98614 7.11494 7.12591 7.52816 7.56397 7.71645 8.03316 8.58285 9.15249 9.51082 10.02484 10.73321 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.001790 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.036105 B =15641.748478 C =16158.579686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 H 0.103 0.897 4 N -0.710 5.710 5 C 0.557 3.443 6 O -0.511 6.511 7 C -0.125 4.125 8 C -0.112 4.112 9 C 0.084 3.916 10 N -0.441 5.441 11 C 0.072 3.928 12 C 0.107 3.893 13 F -0.104 7.104 14 C 0.078 3.922 15 H 0.047 0.953 16 C -0.141 4.141 17 N -0.660 5.660 18 C 0.052 3.948 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.399 0.601 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.176 0.824 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.352 0.648 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.961 -6.506 26.078 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.037 3.963 3 H 0.121 0.879 4 N -0.363 5.363 5 C 0.342 3.658 6 O -0.386 6.386 7 C -0.137 4.137 8 C -0.133 4.133 9 C -0.072 4.072 10 N -0.150 5.150 11 C -0.088 4.088 12 C 0.084 3.916 13 F -0.082 7.082 14 C -0.033 4.033 15 H 0.065 0.935 16 C -0.199 4.199 17 N -0.296 5.296 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.193 0.807 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.175 0.825 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.428 -5.096 26.523 27.763 hybrid contribution -1.163 -0.686 -1.465 1.992 sum 5.266 -5.781 25.058 26.250 Atomic orbital electron populations 1.22269 0.94857 1.02388 1.03443 1.21172 0.94170 0.98383 0.82624 0.87877 1.45848 1.67101 1.13951 1.09381 1.17857 0.78622 0.86592 0.82716 1.90883 1.48503 1.14789 1.84393 1.20647 1.03555 0.95232 0.94254 1.22360 0.96962 0.92865 1.01074 1.22856 0.96133 1.00915 0.87310 1.67609 1.12259 1.07246 1.27865 1.23043 0.97082 0.90665 0.97976 1.18926 0.98397 0.80002 0.94301 1.91641 1.89380 1.30764 1.96401 1.21733 0.96589 0.95846 0.89120 0.93470 1.21822 0.94088 1.02940 1.01018 1.60170 1.35435 1.31838 1.02185 1.21723 1.01372 0.93814 0.91183 1.19778 0.85088 0.88217 0.84437 1.90536 1.55289 1.16083 1.84726 1.41849 1.57697 1.12434 1.07942 1.19661 1.40045 0.96456 0.86809 0.87939 1.25263 0.97614 0.95781 0.99247 1.69598 1.48572 1.08857 1.27289 0.85912 0.79441 0.78850 0.79993 1.19861 1.20975 1.19905 0.90479 0.92354 0.91592 0.76585 0.83271 0.81119 0.80724 0.91618 0.93050 0.92104 0.82500 0.89493 0.93795 0.77476 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.25 37.16 0.34 -1.46 16 2 C 0.14 1.49 2.29 -67.93 -0.16 1.33 16 3 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 4 N -0.71 -5.92 4.34 -54.70 -0.24 -6.15 16 5 C 0.56 5.93 7.76 -12.26 -0.10 5.84 16 6 O -0.51 -7.60 15.14 5.34 0.08 -7.52 16 7 C -0.12 -1.04 5.91 -104.60 -0.62 -1.66 16 8 C -0.11 -0.55 9.61 -39.03 -0.38 -0.93 16 9 C 0.08 0.41 11.17 -17.61 -0.20 0.22 16 10 N -0.44 -3.12 10.33 -13.24 -0.14 -3.26 16 11 C 0.07 0.50 11.17 -17.49 -0.20 0.30 16 12 C 0.11 0.95 7.33 -38.79 -0.28 0.67 16 13 F -0.10 -1.17 15.72 2.25 0.04 -1.14 16 14 C 0.08 0.85 2.28 -67.71 -0.15 0.70 16 15 H 0.05 0.45 7.80 -51.93 -0.41 0.05 16 16 C -0.14 -1.45 9.26 37.16 0.34 -1.11 16 17 N -0.66 -10.03 5.93 -108.00 -0.64 -10.67 16 18 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 19 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 20 O -0.58 -15.63 15.78 5.54 0.09 -15.54 16 21 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 26 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 30 H 0.08 0.88 6.21 -51.93 -0.32 0.56 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 2.06 6.53 -40.82 -0.27 1.80 16 34 H 0.15 0.27 6.54 -52.49 -0.34 -0.08 16 35 H 0.17 0.31 8.06 -52.48 -0.42 -0.11 16 36 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.05 0.40 7.44 -51.93 -0.39 0.01 16 39 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 40 H 0.35 5.58 5.86 -39.29 -0.23 5.35 16 41 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 42 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 43 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -34.65 376.26 -6.73 -41.38 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.49 Total: 12.03 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.74 Total: 6.86 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.35 Total: -57.62 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.06 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.65 -6.73 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.710 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds