Wall clock time and date at job start Tue Mar 31 2020 20:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47111 * 2 1 4 4 N 1.46503 * 109.46980 * 119.99334 * 2 1 3 5 5 C 1.34773 * 120.00246 * 275.00301 * 4 2 1 6 6 O 1.21525 * 120.00208 * 359.97438 * 5 4 2 7 7 C 1.48005 * 119.99867 * 180.02562 * 5 4 2 8 8 C 1.39895 * 120.93971 * 359.97438 * 7 5 4 9 9 C 1.38045 * 119.03190 * 180.02562 * 8 7 5 10 10 N 1.31859 * 120.98350 * 0.02562 * 9 8 7 11 11 C 1.31716 * 122.09186 * 359.97438 * 10 9 8 12 12 C 1.38539 * 120.85209 * 0.02562 * 11 10 9 13 13 F 1.35100 * 120.54014 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47035 * 239.99595 * 2 1 3 15 15 H 1.08994 * 109.46919 * 299.99761 * 14 2 1 16 16 C 1.53002 * 109.46843 * 180.02562 * 14 2 1 17 17 N 1.46894 * 109.47077 * 60.00326 * 14 2 1 18 18 C 1.46897 * 110.99789 * 204.99927 * 17 14 2 19 19 C 1.50700 * 109.46976 * 179.97438 * 18 17 14 20 20 O 1.21298 * 120.00434 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00153 * 179.97438 * 19 18 17 22 22 C 1.37093 * 120.00174 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00121 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99737 * 180.02562 * 22 21 19 25 25 N 1.31402 * 120.00129 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99790 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47015 * 59.99711 * 26 24 22 28 28 H 1.48491 * 109.47034 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46775 * 299.99849 * 26 24 22 30 30 H 1.09002 * 109.47054 * 59.99921 * 1 2 3 31 31 H 1.08991 * 109.47308 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47222 * 300.00813 * 1 2 3 33 33 H 0.97001 * 119.99715 * 95.00044 * 4 2 1 34 34 H 1.07999 * 120.48890 * 0.04785 * 8 7 5 35 35 H 1.08005 * 119.50429 * 179.72485 * 9 8 7 36 36 H 1.08002 * 119.57433 * 179.97438 * 11 10 9 37 37 H 1.09007 * 109.47139 * 299.99583 * 16 14 2 38 38 H 1.09001 * 109.47368 * 59.99830 * 16 14 2 39 39 H 1.08998 * 109.46885 * 180.02562 * 16 14 2 40 40 H 1.00903 * 111.00129 * 328.95500 * 17 14 2 41 41 H 1.08999 * 109.47219 * 299.99974 * 18 17 14 42 42 H 1.08994 * 109.47296 * 60.00132 * 18 17 14 43 43 H 0.97006 * 119.99545 * 359.97438 * 21 19 18 44 44 H 0.97005 * 120.00302 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8584 1.1611 2.4116 7 6 2.6408 -0.7156 3.5655 8 6 2.9792 -2.0724 3.5250 9 6 3.4353 -2.6838 4.6756 10 7 3.5537 -2.0084 5.8019 11 6 3.2471 -0.7303 5.8870 12 6 2.7815 -0.0362 4.7821 13 9 2.4684 1.2746 4.8766 14 6 2.0400 -0.7213 -1.2492 15 1 1.6767 -1.7490 -1.2491 16 6 3.5700 -0.7219 -1.2488 17 7 1.5504 -0.0289 -2.4486 18 6 1.4876 -0.9441 -3.5960 19 6 0.9816 -0.2000 -4.8049 20 8 0.7013 0.9770 -4.7192 21 7 0.8414 -0.8421 -5.9815 22 6 0.3816 -0.1651 -7.0814 23 1 0.1313 0.8827 -7.0049 24 6 0.2366 -0.8274 -8.2944 25 7 0.5407 -2.1023 -8.3873 26 14 -0.3906 0.0950 -9.7929 27 1 0.5305 1.2174 -10.1047 28 1 -0.4535 -0.8300 -10.9529 29 1 -1.7468 0.6309 -9.5124 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.8853 -2.6334 2.6069 35 1 3.6945 -3.7320 4.6541 36 1 3.3592 -0.2169 6.8305 37 1 3.9337 0.3057 -1.2487 38 1 3.9330 -1.2359 -0.3588 39 1 3.9333 -1.2354 -2.1390 40 1 0.6527 0.3992 -2.2780 41 1 2.4830 -1.3378 -3.8016 42 1 0.8112 -1.7676 -3.3673 43 1 1.0666 -1.7832 -6.0503 44 1 0.4399 -2.5646 -9.2342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733966262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:20 Heat of formation + Delta-G solvation = -101.504548 kcal Electronic energy + Delta-G solvation = -28271.598423 eV Core-core repulsion = 23944.545427 eV Total energy + Delta-G solvation = -4327.052996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08460 -41.68613 -40.56594 -40.10781 -38.51210 -36.07283 -35.49883 -34.02549 -33.25937 -31.99953 -31.65984 -30.81278 -28.05658 -26.35961 -25.91771 -24.77359 -24.04857 -21.98042 -21.59248 -21.10044 -19.93549 -19.48551 -18.49415 -18.41938 -17.77111 -17.31160 -17.08049 -17.04741 -16.53897 -16.40151 -16.02644 -15.84826 -15.45992 -15.38989 -15.21678 -14.88881 -14.75032 -14.53240 -14.45774 -14.19228 -14.11096 -13.54430 -13.47825 -13.20171 -13.13416 -12.90141 -12.69325 -12.64070 -12.42807 -12.36079 -12.12399 -11.65457 -11.56896 -11.49907 -11.12999 -10.70627 -10.33784 -10.31115 -10.10307 -10.00913 -9.35228 -8.46283 -5.94576 -0.61562 -0.19405 1.39850 1.42128 1.52494 1.65695 1.73511 2.06362 2.29811 2.58030 2.83153 2.93693 3.21238 3.31342 3.39987 3.50533 3.51637 3.59927 3.66574 3.91673 4.13849 4.28408 4.31649 4.39337 4.47016 4.50163 4.54287 4.60486 4.64979 4.69099 4.74787 4.84508 4.91682 4.99382 5.16758 5.25469 5.39720 5.41818 5.43867 5.89790 6.10716 6.30658 6.37365 6.61123 6.66301 6.98883 7.13508 7.57278 8.13144 8.70656 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.001790 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.036105 B =15641.748478 C =16158.579686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.071 0.929 4 N -0.690 5.690 5 C 0.556 3.444 6 O -0.564 6.564 7 C -0.139 4.139 8 C -0.094 4.094 9 C 0.092 3.908 10 N -0.457 5.457 11 C 0.074 3.926 12 C 0.076 3.924 13 F -0.128 7.128 14 C 0.084 3.916 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.681 5.681 18 C 0.068 3.932 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.419 0.581 34 H 0.188 0.812 35 H 0.210 0.790 36 H 0.191 0.809 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.346 0.654 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.673 -9.850 26.502 29.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.089 0.911 4 N -0.344 5.344 5 C 0.342 3.658 6 O -0.442 6.442 7 C -0.151 4.151 8 C -0.114 4.114 9 C -0.064 4.064 10 N -0.166 5.166 11 C -0.085 4.085 12 C 0.053 3.947 13 F -0.106 7.106 14 C -0.026 4.026 15 H 0.097 0.903 16 C -0.198 4.198 17 N -0.317 5.317 18 C -0.064 4.064 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.559 5.559 26 Si 0.814 3.186 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.198 1.198 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.258 0.742 34 H 0.206 0.794 35 H 0.226 0.774 36 H 0.208 0.792 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.168 0.832 41 H 0.125 0.875 42 H 0.092 0.908 43 H 0.232 0.768 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.167 -8.507 26.965 29.169 hybrid contribution -1.345 0.291 -1.534 2.061 sum 5.821 -8.216 25.431 27.352 Atomic orbital electron populations 1.22207 0.94787 1.03324 1.02156 1.20893 0.94124 0.97117 0.83497 0.91125 1.45583 1.66132 1.14654 1.08001 1.18251 0.77771 0.86080 0.83678 1.90861 1.50902 1.17232 1.85243 1.20608 1.04902 0.96707 0.92896 1.22746 0.94850 0.91127 1.02712 1.23549 0.94190 1.02299 0.86388 1.67698 1.12690 1.07086 1.29131 1.23243 0.96413 0.90794 0.98003 1.19285 1.00354 0.79442 0.95603 1.91573 1.89973 1.32505 1.96595 1.21773 0.96884 0.96785 0.87111 0.90328 1.21841 0.93428 1.01918 1.02568 1.60154 1.35366 1.32684 1.03527 1.21580 1.02608 0.93601 0.88656 1.20950 0.83223 0.87991 0.85544 1.90507 1.56707 1.18374 1.85642 1.41906 1.58233 1.12622 1.08140 1.19610 1.42228 0.95939 0.88676 0.90498 1.25995 0.97249 0.96629 1.01257 1.69649 1.48485 1.09560 1.28180 0.85025 0.78678 0.77852 0.77001 1.19929 1.19398 1.19778 0.91745 0.90191 0.92942 0.74212 0.79446 0.77369 0.79193 0.94000 0.89894 0.92110 0.83214 0.87500 0.90814 0.76846 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.25 71.98 0.67 -2.75 16 2 C 0.15 3.02 2.29 44.99 0.10 3.12 16 3 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 4 N -0.69 -10.05 4.34 -445.26 -1.93 -11.98 16 5 C 0.56 11.60 7.76 86.83 0.67 12.27 16 6 O -0.56 -17.70 15.14 -3.80 -0.06 -17.76 16 7 C -0.14 -2.15 5.91 -19.85 -0.12 -2.27 16 8 C -0.09 -0.57 9.61 22.63 0.22 -0.36 16 9 C 0.09 0.55 11.17 84.64 0.95 1.49 16 10 N -0.46 -5.38 10.33 -195.81 -2.02 -7.41 16 11 C 0.07 0.96 11.17 84.78 0.95 1.91 16 12 C 0.08 1.37 7.33 22.78 0.17 1.54 16 13 F -0.13 -3.14 15.72 44.97 0.71 -2.43 16 14 C 0.08 1.63 2.28 44.92 0.10 1.73 16 15 H 0.08 1.11 7.80 -2.39 -0.02 1.09 16 16 C -0.14 -2.53 9.26 71.98 0.67 -1.86 16 17 N -0.68 -19.97 5.93 -495.61 -2.94 -22.91 16 18 C 0.07 2.13 5.97 85.56 0.51 2.64 16 19 C 0.44 20.15 7.82 87.66 0.69 20.84 16 20 O -0.63 -34.49 15.78 -3.09 -0.05 -34.53 16 21 N -0.57 -28.62 5.29 -306.97 -1.62 -30.24 16 22 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 26 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 29 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 30 H 0.06 1.50 6.21 -2.39 -0.01 1.48 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.42 2.54 6.53 -92.71 -0.61 1.93 16 34 H 0.19 -0.43 6.54 -2.91 -0.02 -0.44 16 35 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 36 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.08 0.96 7.44 -2.39 -0.02 0.94 16 39 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 40 H 0.35 10.93 5.86 -89.69 -0.53 10.41 16 41 H 0.11 2.97 7.44 -2.39 -0.02 2.96 16 42 H 0.07 1.91 8.05 -2.39 -0.02 1.89 16 43 H 0.40 18.65 7.90 -92.70 -0.73 17.91 16 44 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 Total: -1.00 -79.90 376.26 0.46 -79.45 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.78 Total: 31.31 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.85 Total: 20.15 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -8.24 Total: -120.83 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.11 Total: -52.29 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.71 Total: -2.43 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -79.90 0.46 -79.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.058 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds