Wall clock time and date at job start Tue Mar 31 2020 20:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47192 * 2 1 4 4 N 1.46900 * 109.47049 * 119.99484 * 2 1 3 5 5 C 1.46897 * 111.00246 * 275.00479 * 4 2 1 6 6 C 1.50704 * 109.47119 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00039 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99727 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99686 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00180 * 0.02562 * 9 8 6 11 11 C 1.38950 * 119.99704 * 179.97438 * 9 8 6 12 12 N 1.31406 * 120.00174 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99881 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47066 * 89.99910 * 13 11 9 15 15 H 1.48497 * 109.47217 * 210.00247 * 13 11 9 16 16 H 1.48508 * 109.47121 * 330.00104 * 13 11 9 17 17 C 1.52991 * 109.47261 * 239.99700 * 2 1 3 18 18 H 1.09002 * 109.47010 * 299.99801 * 17 2 1 19 19 C 1.53007 * 109.47116 * 180.02562 * 17 2 1 20 20 N 1.46500 * 109.47541 * 60.00325 * 17 2 1 21 21 C 1.34773 * 120.00401 * 205.00202 * 20 17 2 22 22 O 1.21533 * 119.99589 * 359.97438 * 21 20 17 23 23 C 1.47990 * 120.00367 * 179.97438 * 21 20 17 24 24 C 1.39901 * 120.94000 * 0.02562 * 23 21 20 25 25 C 1.38045 * 119.03683 * 179.97438 * 24 23 21 26 26 N 1.31857 * 120.98120 * 0.02562 * 25 24 23 27 27 C 1.31724 * 122.09297 * 359.97438 * 26 25 24 28 28 C 1.38530 * 120.84730 * 359.97438 * 27 26 25 29 29 F 1.35102 * 120.53617 * 179.97438 * 28 27 26 30 30 H 1.09008 * 109.47321 * 300.00355 * 1 2 3 31 31 H 1.09003 * 109.46906 * 60.00192 * 1 2 3 32 32 H 1.08999 * 109.47192 * 179.97438 * 1 2 3 33 33 H 1.00900 * 111.00534 * 151.04566 * 4 2 1 34 34 H 1.09004 * 109.47218 * 299.99557 * 5 4 2 35 35 H 1.08994 * 109.47633 * 59.99494 * 5 4 2 36 36 H 0.96998 * 120.00524 * 359.97438 * 8 6 5 37 37 H 0.97008 * 120.00203 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.47055 * 299.99420 * 19 17 2 39 39 H 1.09003 * 109.47133 * 60.00058 * 19 17 2 40 40 H 1.09004 * 109.46729 * 179.97438 * 19 17 2 41 41 H 0.97001 * 119.99807 * 24.99692 * 20 17 2 42 42 H 1.08001 * 120.48443 * 0.24448 * 24 23 21 43 43 H 1.08004 * 119.50856 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.57486 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5871 -0.5217 3.5561 7 8 2.8667 -1.6987 3.4706 8 7 2.7280 0.1207 4.7326 9 6 3.1868 -0.5566 5.8328 10 1 3.4357 -1.6048 5.7566 11 6 3.3324 0.1058 7.0455 12 7 3.0300 1.3812 7.1380 13 14 3.9569 -0.8172 8.5447 14 1 5.4380 -0.7262 8.6006 15 1 3.3773 -0.2164 9.7728 16 1 3.5517 -2.2430 8.4525 17 6 2.0399 -0.7213 -1.2491 18 1 1.6766 -1.7490 -1.2490 19 6 3.5700 -0.7218 -1.2488 20 7 1.5517 -0.0308 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7125 -1.8822 -3.6609 23 6 0.9293 -0.0057 -4.8146 24 6 0.5910 1.3512 -4.7742 25 6 0.1350 1.9626 -5.9248 26 7 0.0157 1.2870 -7.0508 27 6 0.3221 0.0087 -7.1359 28 6 0.7885 -0.6849 -6.0312 29 9 1.1005 -1.9961 -6.1254 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.9172 -1.1205 1.0289 34 1 2.7587 1.0463 2.1183 35 1 1.0870 0.6165 2.5525 36 1 2.5047 1.0622 4.8009 37 1 3.1314 1.8436 7.9848 38 1 3.9337 0.3057 -1.2487 39 1 3.9330 -1.2359 -0.3587 40 1 3.9333 -1.2361 -2.1385 41 1 1.3210 0.9104 -2.4019 42 1 0.6894 1.9133 -3.8572 43 1 -0.1287 3.0097 -5.9021 44 1 0.2091 -0.5049 -8.0792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733966264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:24 Heat of formation + Delta-G solvation = -74.130341 kcal Electronic energy + Delta-G solvation = -28270.547251 eV Core-core repulsion = 23944.681289 eV Total energy + Delta-G solvation = -4325.865961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.38118 -41.03224 -39.81651 -38.49804 -37.34174 -34.69535 -33.90720 -33.33074 -31.50577 -31.29817 -30.65559 -29.92681 -26.50380 -25.69546 -24.36541 -24.12582 -23.20849 -21.17547 -20.71230 -19.37972 -18.77290 -17.99388 -17.79200 -17.77634 -16.49914 -16.47928 -16.30253 -15.85367 -15.45428 -15.16829 -14.97806 -14.65349 -14.48206 -14.16534 -14.04588 -13.93661 -13.86706 -13.71295 -13.60792 -13.08330 -12.70825 -12.53659 -12.44654 -11.99326 -11.77554 -11.66464 -11.50450 -11.41059 -11.07029 -10.79629 -10.72388 -10.55538 -10.41081 -10.24266 -10.10434 -9.61672 -9.53659 -9.46915 -8.50487 -8.16431 -7.99162 -6.44437 -3.85219 -0.04041 0.26301 2.37299 2.50358 3.10491 3.16170 3.25152 3.31298 3.35348 3.77844 3.86595 3.89634 4.00979 4.06207 4.13644 4.27741 4.48136 4.68176 4.74043 4.95704 5.01957 5.07330 5.10285 5.13264 5.21934 5.27231 5.38499 5.53608 5.58576 5.71225 5.76603 5.86674 5.88595 5.91022 6.04525 6.08798 6.18764 6.28560 6.98559 7.11451 7.12518 7.52918 7.56334 7.71598 8.03451 8.58131 9.15244 9.51043 10.02331 10.73207 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.001790 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.001939 B =15641.887868 C =16158.583970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.047 0.953 4 N -0.660 5.660 5 C 0.052 3.948 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.141 3.859 18 H 0.103 0.897 19 C -0.171 4.171 20 N -0.710 5.710 21 C 0.557 3.443 22 O -0.511 6.511 23 C -0.125 4.125 24 C -0.112 4.112 25 C 0.084 3.916 26 N -0.441 5.441 27 C 0.072 3.928 28 C 0.107 3.893 29 F -0.104 7.104 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 6.484 -26.100 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 H 0.065 0.935 4 N -0.296 5.296 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.036 3.964 18 H 0.121 0.879 19 C -0.230 4.230 20 N -0.363 5.363 21 C 0.342 3.658 22 O -0.386 6.386 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.072 4.072 26 N -0.150 5.150 27 C -0.088 4.088 28 C 0.084 3.916 29 F -0.082 7.082 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.175 0.825 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.234 0.766 42 H 0.167 0.833 43 H 0.189 0.811 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.444 5.065 -26.547 27.784 hybrid contribution 1.172 0.702 1.467 2.005 sum -5.272 5.768 -25.080 26.269 Atomic orbital electron populations 1.21821 0.94084 1.02937 1.01020 1.21732 0.96590 0.95847 0.89119 0.93467 1.60170 1.35433 1.31844 1.02185 1.21726 1.01384 0.93815 0.91182 1.19775 0.85061 0.88216 0.84433 1.90533 1.55264 1.16084 1.84718 1.41857 1.57765 1.12392 1.07958 1.19710 1.39957 0.96443 0.86783 0.87886 1.25263 0.97630 0.95792 0.99257 1.69608 1.48623 1.08851 1.27231 0.85853 0.78757 0.79547 0.80115 1.20423 1.20913 1.19378 1.21170 0.94175 0.98382 0.82624 0.87879 1.22271 0.94856 1.02385 1.03445 1.45846 1.67099 1.13948 1.09382 1.17856 0.78625 0.86592 0.82716 1.90885 1.48488 1.14803 1.84397 1.20644 1.03549 0.95246 0.94247 1.22362 0.96979 0.92860 1.01062 1.22855 0.96145 1.00911 0.87300 1.67611 1.12271 1.07232 1.27865 1.23043 0.97072 0.90671 0.97981 1.18924 0.98399 0.79997 0.94303 1.91642 1.89410 1.30734 1.96404 0.92101 0.93058 0.91615 0.82503 0.93788 0.89495 0.77478 0.91868 0.92354 0.90481 0.91587 0.76585 0.83272 0.81118 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.26 37.15 0.34 -1.11 16 2 C 0.08 0.85 2.28 -67.72 -0.15 0.70 16 3 H 0.05 0.45 7.80 -51.93 -0.40 0.05 16 4 N -0.66 -10.03 5.93 -108.00 -0.64 -10.67 16 5 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 6 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 7 O -0.58 -15.61 15.78 5.55 0.09 -15.53 16 8 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 9 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 13 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 C 0.14 1.49 2.29 -67.93 -0.16 1.33 16 18 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 19 C -0.17 -1.81 9.25 37.16 0.34 -1.46 16 20 N -0.71 -5.91 4.34 -54.71 -0.24 -6.15 16 21 C 0.56 5.93 7.76 -12.26 -0.10 5.83 16 22 O -0.51 -7.60 15.15 5.34 0.08 -7.52 16 23 C -0.12 -1.04 5.91 -104.60 -0.62 -1.66 16 24 C -0.11 -0.55 9.61 -39.03 -0.38 -0.93 16 25 C 0.08 0.41 11.17 -17.61 -0.20 0.22 16 26 N -0.44 -3.12 10.33 -13.24 -0.14 -3.26 16 27 C 0.07 0.50 11.17 -17.49 -0.20 0.30 16 28 C 0.11 0.95 7.33 -38.80 -0.28 0.67 16 29 F -0.10 -1.17 15.72 2.25 0.04 -1.14 16 30 H 0.06 0.65 7.45 -51.92 -0.39 0.27 16 31 H 0.05 0.40 7.45 -51.93 -0.39 0.01 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.35 5.57 5.87 -39.29 -0.23 5.34 16 34 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 35 H 0.09 1.34 7.43 -51.93 -0.39 0.95 16 36 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.88 6.21 -51.93 -0.32 0.56 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 2.06 6.53 -40.82 -0.27 1.80 16 42 H 0.15 0.26 6.54 -52.49 -0.34 -0.08 16 43 H 0.17 0.31 8.06 -52.48 -0.42 -0.11 16 44 H 0.18 0.78 8.06 -52.48 -0.42 0.35 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -34.68 376.26 -6.73 -41.41 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.49 Total: 11.98 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.74 Total: 6.87 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.35 Total: -57.62 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.68 -6.73 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.722 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds