Wall clock time and date at job start Tue Mar 31 2020 20:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47192 * 2 1 4 4 N 1.46900 * 109.47049 * 119.99484 * 2 1 3 5 5 C 1.46897 * 111.00246 * 275.00479 * 4 2 1 6 6 C 1.50704 * 109.47119 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00039 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99727 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99686 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00180 * 0.02562 * 9 8 6 11 11 C 1.38950 * 119.99704 * 179.97438 * 9 8 6 12 12 N 1.31406 * 120.00174 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99881 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47066 * 89.99910 * 13 11 9 15 15 H 1.48497 * 109.47217 * 210.00247 * 13 11 9 16 16 H 1.48508 * 109.47121 * 330.00104 * 13 11 9 17 17 C 1.52991 * 109.47261 * 239.99700 * 2 1 3 18 18 H 1.09002 * 109.47010 * 299.99801 * 17 2 1 19 19 C 1.53007 * 109.47116 * 180.02562 * 17 2 1 20 20 N 1.46500 * 109.47541 * 60.00325 * 17 2 1 21 21 C 1.34773 * 120.00401 * 205.00202 * 20 17 2 22 22 O 1.21533 * 119.99589 * 359.97438 * 21 20 17 23 23 C 1.47990 * 120.00367 * 179.97438 * 21 20 17 24 24 C 1.39901 * 120.94000 * 0.02562 * 23 21 20 25 25 C 1.38045 * 119.03683 * 179.97438 * 24 23 21 26 26 N 1.31857 * 120.98120 * 0.02562 * 25 24 23 27 27 C 1.31724 * 122.09297 * 359.97438 * 26 25 24 28 28 C 1.38530 * 120.84730 * 359.97438 * 27 26 25 29 29 F 1.35102 * 120.53617 * 179.97438 * 28 27 26 30 30 H 1.09008 * 109.47321 * 300.00355 * 1 2 3 31 31 H 1.09003 * 109.46906 * 60.00192 * 1 2 3 32 32 H 1.08999 * 109.47192 * 179.97438 * 1 2 3 33 33 H 1.00900 * 111.00534 * 151.04566 * 4 2 1 34 34 H 1.09004 * 109.47218 * 299.99557 * 5 4 2 35 35 H 1.08994 * 109.47633 * 59.99494 * 5 4 2 36 36 H 0.96998 * 120.00524 * 359.97438 * 8 6 5 37 37 H 0.97008 * 120.00203 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.47055 * 299.99420 * 19 17 2 39 39 H 1.09003 * 109.47133 * 60.00058 * 19 17 2 40 40 H 1.09004 * 109.46729 * 179.97438 * 19 17 2 41 41 H 0.97001 * 119.99807 * 24.99692 * 20 17 2 42 42 H 1.08001 * 120.48443 * 0.24448 * 24 23 21 43 43 H 1.08004 * 119.50856 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.57486 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5871 -0.5217 3.5561 7 8 2.8667 -1.6987 3.4706 8 7 2.7280 0.1207 4.7326 9 6 3.1868 -0.5566 5.8328 10 1 3.4357 -1.6048 5.7566 11 6 3.3324 0.1058 7.0455 12 7 3.0300 1.3812 7.1380 13 14 3.9569 -0.8172 8.5447 14 1 5.4380 -0.7262 8.6006 15 1 3.3773 -0.2164 9.7728 16 1 3.5517 -2.2430 8.4525 17 6 2.0399 -0.7213 -1.2491 18 1 1.6766 -1.7490 -1.2490 19 6 3.5700 -0.7218 -1.2488 20 7 1.5517 -0.0308 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7125 -1.8822 -3.6609 23 6 0.9293 -0.0057 -4.8146 24 6 0.5910 1.3512 -4.7742 25 6 0.1350 1.9626 -5.9248 26 7 0.0157 1.2870 -7.0508 27 6 0.3221 0.0087 -7.1359 28 6 0.7885 -0.6849 -6.0312 29 9 1.1005 -1.9961 -6.1254 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.9172 -1.1205 1.0289 34 1 2.7587 1.0463 2.1183 35 1 1.0870 0.6165 2.5525 36 1 2.5047 1.0622 4.8009 37 1 3.1314 1.8436 7.9848 38 1 3.9337 0.3057 -1.2487 39 1 3.9330 -1.2359 -0.3587 40 1 3.9333 -1.2361 -2.1385 41 1 1.3210 0.9104 -2.4019 42 1 0.6894 1.9133 -3.8572 43 1 -0.1287 3.0097 -5.9021 44 1 0.2091 -0.5049 -8.0792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733966264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:23 Heat of formation + Delta-G solvation = -101.576699 kcal Electronic energy + Delta-G solvation = -28271.737414 eV Core-core repulsion = 23944.681289 eV Total energy + Delta-G solvation = -4327.056125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.08441 -41.68592 -40.56621 -40.11008 -38.51249 -36.07445 -35.49944 -34.02544 -33.26016 -32.00011 -31.66002 -30.81275 -28.05758 -26.36062 -25.91918 -24.77375 -24.04877 -21.98076 -21.59247 -21.10193 -19.93677 -19.48571 -18.49441 -18.41914 -17.77215 -17.31248 -17.07995 -17.04932 -16.53930 -16.40429 -16.02593 -15.84503 -15.46082 -15.39094 -15.21699 -14.88916 -14.75081 -14.53127 -14.45890 -14.19330 -14.11354 -13.54681 -13.48336 -13.20169 -13.13412 -12.90399 -12.69296 -12.64088 -12.41692 -12.35881 -12.12574 -11.65531 -11.56894 -11.50409 -11.12967 -10.70657 -10.33891 -10.31115 -10.10349 -10.00834 -9.35228 -8.46553 -5.94776 -0.61618 -0.19399 1.37899 1.42136 1.54360 1.65682 1.73494 2.06223 2.29717 2.58021 2.83179 2.93648 3.21014 3.31336 3.39982 3.50501 3.51633 3.59936 3.66539 3.91640 4.13826 4.28388 4.31630 4.39360 4.46915 4.50125 4.54269 4.60520 4.64972 4.69125 4.74777 4.84491 4.91679 4.99414 5.16737 5.25477 5.39727 5.41934 5.43855 5.89808 6.10731 6.30632 6.37377 6.60991 6.66283 6.98868 7.13516 7.57233 8.13049 8.70632 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.001790 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.001939 B =15641.887868 C =16158.583970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.084 3.916 3 H 0.079 0.921 4 N -0.681 5.681 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.626 6.626 8 N -0.572 5.572 9 C -0.334 4.334 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.918 5.918 13 Si 0.991 3.009 14 H -0.271 1.271 15 H -0.270 1.270 16 H -0.275 1.275 17 C 0.149 3.851 18 H 0.070 0.930 19 C -0.166 4.166 20 N -0.690 5.690 21 C 0.556 3.444 22 O -0.564 6.564 23 C -0.139 4.139 24 C -0.094 4.094 25 C 0.092 3.908 26 N -0.457 5.457 27 C 0.074 3.926 28 C 0.076 3.924 29 F -0.128 7.128 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.346 0.654 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.419 0.581 42 H 0.188 0.812 43 H 0.210 0.790 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 9.853 -26.516 29.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 H 0.097 0.903 4 N -0.317 5.317 5 C -0.065 4.065 6 C 0.223 3.777 7 O -0.512 6.512 8 N -0.209 5.209 9 C -0.464 4.464 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.559 5.559 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.200 1.200 17 C 0.044 3.956 18 H 0.089 0.911 19 C -0.225 4.225 20 N -0.344 5.344 21 C 0.342 3.658 22 O -0.442 6.442 23 C -0.151 4.151 24 C -0.114 4.114 25 C -0.064 4.064 26 N -0.166 5.166 27 C -0.085 4.085 28 C 0.053 3.947 29 F -0.106 7.106 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.168 0.832 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.258 0.742 42 H 0.206 0.794 43 H 0.226 0.774 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.169 8.504 -26.980 29.183 hybrid contribution 1.352 -0.282 1.536 2.065 sum -5.817 8.222 -25.445 27.365 Atomic orbital electron populations 1.21840 0.93429 1.01914 1.02570 1.21772 0.96881 0.96788 0.87110 0.90322 1.60154 1.35367 1.32691 1.03527 1.21583 1.02620 0.93602 0.88650 1.20948 0.83194 0.87989 0.85541 1.90504 1.56687 1.18380 1.85636 1.41912 1.58302 1.12578 1.08151 1.19642 1.42165 0.95887 0.88659 0.90516 1.25993 0.97261 0.96639 1.01263 1.69658 1.48529 1.09551 1.28162 0.84961 0.78503 0.77979 0.77097 1.19630 1.19493 1.20035 1.20891 0.94130 0.97115 0.83496 0.91129 1.22209 0.94784 1.03322 1.02158 1.45581 1.66129 1.14651 1.08003 1.18249 0.77773 0.86079 0.83679 1.90863 1.50888 1.17246 1.85247 1.20605 1.04896 0.96721 0.92890 1.22749 0.94867 0.91124 1.02696 1.23548 0.94207 1.02290 0.86378 1.67699 1.12701 1.07073 1.29131 1.23243 0.96403 0.90800 0.98009 1.19283 1.00356 0.79437 0.95605 1.91573 1.90002 1.32476 1.96598 0.92106 0.89904 0.93998 0.83214 0.90799 0.87506 0.76844 0.91290 0.90189 0.91746 0.92940 0.74212 0.79447 0.77368 0.79190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.26 71.98 0.67 -1.86 16 2 C 0.08 1.63 2.28 44.91 0.10 1.73 16 3 H 0.08 1.11 7.80 -2.39 -0.02 1.09 16 4 N -0.68 -19.97 5.93 -495.61 -2.94 -22.91 16 5 C 0.07 2.12 5.97 85.56 0.51 2.63 16 6 C 0.44 20.16 7.82 87.66 0.69 20.85 16 7 O -0.63 -34.49 15.78 -3.04 -0.05 -34.53 16 8 N -0.57 -28.64 5.29 -306.98 -1.62 -30.26 16 9 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 10 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 11 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 12 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 13 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 17 C 0.15 3.01 2.29 44.99 0.10 3.12 16 18 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 19 C -0.17 -3.41 9.25 71.98 0.67 -2.75 16 20 N -0.69 -10.05 4.34 -445.28 -1.93 -11.98 16 21 C 0.56 11.60 7.76 86.83 0.67 12.27 16 22 O -0.56 -17.70 15.15 -3.82 -0.06 -17.76 16 23 C -0.14 -2.15 5.91 -19.85 -0.12 -2.27 16 24 C -0.09 -0.57 9.61 22.63 0.22 -0.36 16 25 C 0.09 0.55 11.17 84.64 0.95 1.49 16 26 N -0.46 -5.38 10.33 -195.81 -2.02 -7.40 16 27 C 0.07 0.96 11.17 84.78 0.95 1.91 16 28 C 0.08 1.37 7.33 22.78 0.17 1.54 16 29 F -0.13 -3.14 15.72 44.97 0.71 -2.43 16 30 H 0.06 1.12 7.45 -2.38 -0.02 1.10 16 31 H 0.08 0.95 7.45 -2.39 -0.02 0.94 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.35 10.93 5.87 -89.69 -0.53 10.40 16 34 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 35 H 0.11 2.97 7.43 -2.39 -0.02 2.95 16 36 H 0.40 18.64 7.90 -92.71 -0.73 17.91 16 37 H 0.28 13.75 8.31 -92.70 -0.77 12.98 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.49 6.21 -2.39 -0.01 1.48 16 40 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.42 2.53 6.53 -92.71 -0.61 1.93 16 42 H 0.19 -0.43 6.54 -2.91 -0.02 -0.45 16 43 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 44 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -79.99 376.26 0.46 -79.54 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.78 Total: 31.17 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 6.85 Total: 20.20 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -8.24 Total: -120.85 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.11 Total: -52.29 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.71 Total: -2.43 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -79.99 0.46 -79.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733966264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.042 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds