Wall clock time and date at job start Tue Mar 31 2020 20:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47397 * 2 1 4 4 N 1.46898 * 109.47236 * 240.00310 * 2 1 3 5 5 C 1.46899 * 111.00132 * 84.99878 * 4 2 1 6 6 C 1.50699 * 109.47164 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00414 * 0.02562 * 6 5 4 8 8 N 1.34786 * 119.99915 * 180.02562 * 6 5 4 9 9 C 1.37093 * 119.99730 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00421 * 0.02562 * 9 8 6 11 11 C 1.38948 * 119.99565 * 179.97438 * 9 8 6 12 12 N 1.31417 * 120.00468 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99825 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47145 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47043 * 120.00493 * 13 11 9 16 16 H 1.48503 * 109.46994 * 240.00153 * 13 11 9 17 17 C 1.52998 * 109.47066 * 120.00491 * 2 1 3 18 18 H 1.09000 * 109.47097 * 185.00401 * 17 2 1 19 19 C 1.52991 * 109.47340 * 64.99732 * 17 2 1 20 20 N 1.46503 * 109.46815 * 304.99704 * 17 2 1 21 21 C 1.34777 * 119.99570 * 205.00118 * 20 17 2 22 22 O 1.21534 * 120.00425 * 359.97438 * 21 20 17 23 23 C 1.48006 * 119.99451 * 180.02562 * 21 20 17 24 24 N 1.32804 * 119.75626 * 359.97438 * 23 21 20 25 25 C 1.31429 * 121.67251 * 180.02562 * 24 23 21 26 26 C 1.38680 * 120.97614 * 359.97438 * 25 24 23 27 27 C 1.38455 * 119.39793 * 0.02562 * 26 25 24 28 28 C 1.38965 * 118.46420 * 359.97438 * 27 26 25 29 29 F 1.35104 * 120.50212 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47106 * 299.99773 * 1 2 3 31 31 H 1.09009 * 109.46992 * 59.99636 * 1 2 3 32 32 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 33 33 H 1.00903 * 111.00176 * 321.04966 * 4 2 1 34 34 H 1.08997 * 109.47404 * 300.00428 * 5 4 2 35 35 H 1.08997 * 109.46927 * 60.00441 * 5 4 2 36 36 H 0.97000 * 119.99794 * 0.02562 * 8 6 5 37 37 H 0.96999 * 120.00306 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47572 * 300.00378 * 19 17 2 39 39 H 1.09000 * 109.47455 * 60.00076 * 19 17 2 40 40 H 1.09002 * 109.47539 * 179.97438 * 19 17 2 41 41 H 0.96995 * 120.00487 * 25.00076 * 20 17 2 42 42 H 1.07995 * 119.51261 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.30540 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.76757 * 179.72603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5217 -3.5560 7 8 2.8669 -1.6988 -3.4706 8 7 2.7283 0.1207 -4.7325 9 6 3.1881 -0.5563 -5.8324 10 1 3.4370 -1.6045 -5.7562 11 6 3.3328 0.1058 -7.0453 12 7 3.0295 1.3811 -7.1382 13 14 3.9587 -0.8169 -8.5442 14 1 4.2263 -2.2311 -8.1788 15 1 2.9344 -0.7689 -9.6183 16 1 5.2124 -0.1841 -9.0272 17 6 2.0400 -0.7213 1.2492 18 1 3.1263 -0.6444 1.2951 19 6 1.6352 -2.1955 1.1878 20 7 1.4558 -0.1037 2.4423 21 6 2.0913 -0.1940 3.6275 22 8 3.1486 -0.7880 3.7065 23 6 1.5008 0.4295 4.8330 24 7 0.3450 1.0771 4.7412 25 6 -0.2128 1.6449 5.7870 26 6 0.3886 1.5886 7.0353 27 6 1.5947 0.9241 7.1793 28 6 2.1630 0.3325 6.0576 29 9 3.3391 -0.3258 6.1511 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.4496 -1.4978 -1.4102 34 1 1.0871 0.6165 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 2.5050 1.0622 -4.8008 37 1 3.1309 1.8434 -7.9849 38 1 0.5489 -2.2724 1.1419 39 1 2.0698 -2.6550 0.3001 40 1 1.9989 -2.7095 2.0776 41 1 0.6118 0.3701 2.3794 42 1 -1.1538 2.1623 5.6727 43 1 -0.0796 2.0587 7.8875 44 1 2.0846 0.8704 8.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733997858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:34 Heat of formation + Delta-G solvation = -74.178973 kcal Electronic energy + Delta-G solvation = -28283.257945 eV Core-core repulsion = 23957.389874 eV Total energy + Delta-G solvation = -4325.868070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.33274 -40.93112 -39.61042 -38.42183 -37.29168 -34.53276 -33.81759 -33.22476 -31.75894 -31.23683 -30.59106 -29.04903 -26.39540 -25.65620 -24.57036 -24.07410 -23.50799 -21.30110 -19.83818 -19.33773 -18.62801 -18.06334 -17.89856 -17.57790 -16.41462 -16.24863 -15.96426 -15.75458 -15.52744 -15.03890 -14.78475 -14.53028 -14.49683 -14.17895 -13.90248 -13.83637 -13.73805 -13.66228 -13.26561 -13.01836 -12.89612 -12.32667 -12.20323 -12.13945 -11.87792 -11.53468 -11.39485 -11.05270 -10.94104 -10.84121 -10.66957 -10.57726 -10.32918 -10.21062 -10.04048 -9.58762 -9.50554 -9.18299 -8.45805 -8.05901 -7.94366 -6.40412 -3.81046 -0.03169 0.41818 2.35320 2.71516 3.17712 3.25257 3.28279 3.35782 3.47128 3.61888 3.92362 4.04304 4.10275 4.20826 4.22967 4.39263 4.70615 4.76501 4.82366 5.03281 5.11951 5.16740 5.20794 5.27087 5.28120 5.39942 5.43024 5.64898 5.70559 5.81257 5.87704 5.90690 5.99327 6.01349 6.11935 6.27716 6.37730 6.44405 6.97697 7.18033 7.35924 7.56997 7.64628 7.96926 8.08077 8.62721 9.19542 9.55871 10.07233 10.77413 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.001807 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.590569 B =15490.423472 C =15834.731692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 H 0.083 0.917 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.298 4.298 10 H 0.104 0.896 11 C 0.021 3.979 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.152 3.848 18 H 0.099 0.901 19 C -0.163 4.163 20 N -0.702 5.702 21 C 0.566 3.434 22 O -0.517 6.517 23 C 0.048 3.952 24 N -0.432 5.432 25 C 0.087 3.913 26 C -0.120 4.120 27 C -0.119 4.119 28 C 0.111 3.889 29 F -0.103 7.103 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.407 0.593 42 H 0.172 0.828 43 H 0.152 0.848 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 4.820 29.055 31.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.033 4.033 3 H 0.101 0.899 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.427 4.427 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.047 3.953 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.355 5.355 21 C 0.350 3.650 22 O -0.391 6.391 23 C -0.091 4.091 24 N -0.143 5.143 25 C -0.073 4.073 26 C -0.140 4.140 27 C -0.145 4.145 28 C 0.088 3.912 29 F -0.081 7.081 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.174 0.826 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.245 0.755 42 H 0.189 0.811 43 H 0.169 0.831 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.133 3.776 28.270 29.947 hybrid contribution -0.693 0.579 -0.136 0.913 sum -9.826 4.354 28.134 30.117 Atomic orbital electron populations 1.22622 0.97272 1.02779 1.02209 1.21708 0.92734 0.98185 0.90664 0.89861 1.60016 1.57732 1.09120 1.02224 1.21706 1.00006 0.95691 0.90738 1.19801 0.85145 0.88245 0.84157 1.90527 1.55229 1.16253 1.84592 1.41868 1.57848 1.12438 1.07957 1.19758 1.39801 0.96472 0.86716 0.87841 1.25266 0.97702 0.95788 0.99269 1.69621 1.48825 1.08853 1.27075 0.85798 0.78224 0.79656 0.80659 1.19206 1.20810 1.20754 1.20982 0.99610 0.92593 0.82069 0.88339 1.22179 1.01191 0.95445 1.03328 1.46016 1.25947 1.55931 1.07633 1.17637 0.84388 0.80324 0.82676 1.90886 1.21437 1.41916 1.84902 1.21489 0.93414 1.00763 0.93461 1.67632 1.07686 1.05803 1.33202 1.22935 1.00021 0.96636 0.87734 1.22340 0.94534 0.97414 0.99742 1.21768 0.96616 0.97493 0.98666 1.18689 0.83780 0.94491 0.94225 1.91650 1.42740 1.77215 1.96522 0.92253 0.91914 0.91613 0.82620 0.93713 0.89534 0.77478 0.91953 0.92748 0.89798 0.92530 0.75509 0.81085 0.83053 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.68 37.16 0.32 -1.55 16 2 C 0.08 0.94 2.64 -67.71 -0.18 0.77 16 3 H 0.08 0.99 7.80 -51.93 -0.40 0.58 16 4 N -0.66 -10.31 5.23 -108.00 -0.56 -10.88 16 5 C 0.05 0.88 5.97 -4.98 -0.03 0.86 16 6 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 7 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 8 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 9 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 10 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 13 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 C 0.15 1.90 2.63 -67.93 -0.18 1.72 16 18 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 19 C -0.16 -2.02 8.86 37.15 0.33 -1.69 16 20 N -0.70 -7.82 4.98 -54.70 -0.27 -8.09 16 21 C 0.57 7.34 7.77 -12.26 -0.10 7.25 16 22 O -0.52 -8.48 14.98 5.34 0.08 -8.40 16 23 C 0.05 0.50 6.75 -82.95 -0.56 -0.06 16 24 N -0.43 -3.59 9.54 -9.76 -0.09 -3.68 16 25 C 0.09 0.43 11.18 -17.56 -0.20 0.23 16 26 C -0.12 -0.43 10.11 -39.34 -0.40 -0.83 16 27 C -0.12 -0.66 10.16 -39.23 -0.40 -1.06 16 28 C 0.11 1.07 7.32 -38.82 -0.28 0.78 16 29 F -0.10 -1.25 15.55 2.25 0.04 -1.21 16 30 H 0.06 0.48 6.29 -51.93 -0.33 0.15 16 31 H 0.06 0.64 7.45 -51.92 -0.39 0.25 16 32 H 0.06 0.64 6.55 -51.93 -0.34 0.30 16 33 H 0.35 5.68 7.39 -39.29 -0.29 5.39 16 34 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 35 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 36 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 39 H 0.08 1.14 7.13 -51.93 -0.37 0.77 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.41 3.79 5.90 -40.82 -0.24 3.55 16 42 H 0.17 0.29 8.06 -52.49 -0.42 -0.13 16 43 H 0.15 0.02 8.06 -52.48 -0.42 -0.40 16 44 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -34.51 374.16 -6.86 -41.38 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.42 Total: 14.38 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -1.99 Total: 8.69 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.26 Total: -60.94 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.51 -6.86 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733997858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.802 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds