Wall clock time and date at job start Tue Mar 31 2020 20:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47397 * 2 1 4 4 N 1.46898 * 109.47236 * 240.00310 * 2 1 3 5 5 C 1.46899 * 111.00132 * 84.99878 * 4 2 1 6 6 C 1.50699 * 109.47164 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00414 * 0.02562 * 6 5 4 8 8 N 1.34786 * 119.99915 * 180.02562 * 6 5 4 9 9 C 1.37093 * 119.99730 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00421 * 0.02562 * 9 8 6 11 11 C 1.38948 * 119.99565 * 179.97438 * 9 8 6 12 12 N 1.31417 * 120.00468 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99825 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47145 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47043 * 120.00493 * 13 11 9 16 16 H 1.48503 * 109.46994 * 240.00153 * 13 11 9 17 17 C 1.52998 * 109.47066 * 120.00491 * 2 1 3 18 18 H 1.09000 * 109.47097 * 185.00401 * 17 2 1 19 19 C 1.52991 * 109.47340 * 64.99732 * 17 2 1 20 20 N 1.46503 * 109.46815 * 304.99704 * 17 2 1 21 21 C 1.34777 * 119.99570 * 205.00118 * 20 17 2 22 22 O 1.21534 * 120.00425 * 359.97438 * 21 20 17 23 23 C 1.48006 * 119.99451 * 180.02562 * 21 20 17 24 24 N 1.32804 * 119.75626 * 359.97438 * 23 21 20 25 25 C 1.31429 * 121.67251 * 180.02562 * 24 23 21 26 26 C 1.38680 * 120.97614 * 359.97438 * 25 24 23 27 27 C 1.38455 * 119.39793 * 0.02562 * 26 25 24 28 28 C 1.38965 * 118.46420 * 359.97438 * 27 26 25 29 29 F 1.35104 * 120.50212 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.47106 * 299.99773 * 1 2 3 31 31 H 1.09009 * 109.46992 * 59.99636 * 1 2 3 32 32 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 33 33 H 1.00903 * 111.00176 * 321.04966 * 4 2 1 34 34 H 1.08997 * 109.47404 * 300.00428 * 5 4 2 35 35 H 1.08997 * 109.46927 * 60.00441 * 5 4 2 36 36 H 0.97000 * 119.99794 * 0.02562 * 8 6 5 37 37 H 0.96999 * 120.00306 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47572 * 300.00378 * 19 17 2 39 39 H 1.09000 * 109.47455 * 60.00076 * 19 17 2 40 40 H 1.09002 * 109.47539 * 179.97438 * 19 17 2 41 41 H 0.96995 * 120.00487 * 25.00076 * 20 17 2 42 42 H 1.07995 * 119.51261 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.30540 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.76757 * 179.72603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5217 -3.5560 7 8 2.8669 -1.6988 -3.4706 8 7 2.7283 0.1207 -4.7325 9 6 3.1881 -0.5563 -5.8324 10 1 3.4370 -1.6045 -5.7562 11 6 3.3328 0.1058 -7.0453 12 7 3.0295 1.3811 -7.1382 13 14 3.9587 -0.8169 -8.5442 14 1 4.2263 -2.2311 -8.1788 15 1 2.9344 -0.7689 -9.6183 16 1 5.2124 -0.1841 -9.0272 17 6 2.0400 -0.7213 1.2492 18 1 3.1263 -0.6444 1.2951 19 6 1.6352 -2.1955 1.1878 20 7 1.4558 -0.1037 2.4423 21 6 2.0913 -0.1940 3.6275 22 8 3.1486 -0.7880 3.7065 23 6 1.5008 0.4295 4.8330 24 7 0.3450 1.0771 4.7412 25 6 -0.2128 1.6449 5.7870 26 6 0.3886 1.5886 7.0353 27 6 1.5947 0.9241 7.1793 28 6 2.1630 0.3325 6.0576 29 9 3.3391 -0.3258 6.1511 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.4496 -1.4978 -1.4102 34 1 1.0871 0.6165 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 2.5050 1.0622 -4.8008 37 1 3.1309 1.8434 -7.9849 38 1 0.5489 -2.2724 1.1419 39 1 2.0698 -2.6550 0.3001 40 1 1.9989 -2.7095 2.0776 41 1 0.6118 0.3701 2.3794 42 1 -1.1538 2.1623 5.6727 43 1 -0.0796 2.0587 7.8875 44 1 2.0846 0.8704 8.1403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733997858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:33 Heat of formation + Delta-G solvation = -101.652781 kcal Electronic energy + Delta-G solvation = -28284.449298 eV Core-core repulsion = 23957.389874 eV Total energy + Delta-G solvation = -4327.059424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.07711 -41.63436 -40.50647 -40.06798 -38.55542 -36.07414 -35.44392 -33.80414 -33.26454 -32.44478 -31.58270 -30.04468 -27.99615 -26.40439 -25.97535 -24.98876 -24.35645 -22.17181 -21.16304 -20.84275 -19.94257 -19.43373 -18.68800 -18.22732 -17.68472 -17.17427 -17.04210 -16.95881 -16.49100 -16.39171 -16.10921 -15.87514 -15.60618 -15.25779 -15.15404 -14.89822 -14.70911 -14.42685 -14.22377 -14.09747 -13.85197 -13.52749 -13.48958 -13.33357 -13.19090 -13.07728 -12.88753 -12.58053 -12.40120 -12.11718 -11.92224 -11.87581 -11.51122 -11.49252 -11.02511 -10.73992 -10.39023 -10.29022 -10.03382 -10.00827 -9.32233 -8.46586 -5.95006 -0.60724 -0.03240 1.36603 1.41904 1.56086 1.59238 1.84327 2.05907 2.29792 2.63288 2.83616 2.97881 3.07785 3.20849 3.53494 3.60489 3.63590 3.77182 3.86935 3.88504 4.19704 4.29344 4.35533 4.41963 4.46653 4.52539 4.56463 4.61990 4.71357 4.80610 4.84028 4.92490 4.94750 4.97966 5.19023 5.37763 5.41159 5.42219 5.49189 5.88234 6.09124 6.30540 6.40009 6.60625 6.62331 7.05991 7.13274 7.56934 8.12441 8.71013 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.001807 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.590569 B =15490.423472 C =15834.731692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.090 0.910 4 N -0.675 5.675 5 C 0.067 3.933 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.014 4.014 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.274 1.274 15 H -0.269 1.269 16 H -0.272 1.272 17 C 0.157 3.843 18 H 0.066 0.934 19 C -0.155 4.155 20 N -0.688 5.688 21 C 0.560 3.440 22 O -0.565 6.565 23 C 0.019 3.981 24 N -0.446 5.446 25 C 0.089 3.911 26 C -0.094 4.094 27 C -0.115 4.115 28 C 0.081 3.919 29 F -0.129 7.129 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.350 0.650 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.418 0.582 42 H 0.211 0.789 43 H 0.200 0.800 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 6.950 30.741 34.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.025 4.025 3 H 0.108 0.892 4 N -0.308 5.308 5 C -0.065 4.065 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.462 4.462 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.195 1.195 16 H -0.197 1.197 17 C 0.052 3.948 18 H 0.084 0.916 19 C -0.213 4.213 20 N -0.341 5.341 21 C 0.345 3.655 22 O -0.444 6.444 23 C -0.118 4.118 24 N -0.158 5.158 25 C -0.072 4.072 26 C -0.113 4.113 27 C -0.141 4.141 28 C 0.058 3.942 29 F -0.108 7.108 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.170 0.830 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.258 0.742 42 H 0.227 0.773 43 H 0.217 0.783 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.760 5.947 29.960 32.730 hybrid contribution 0.016 -0.009 -0.504 0.505 sum -11.744 5.938 29.455 32.261 Atomic orbital electron populations 1.22552 0.94844 1.03339 1.03466 1.21670 0.94543 0.97748 0.88522 0.89214 1.59943 1.58877 1.09283 1.02687 1.21549 1.01431 0.95170 0.88362 1.20895 0.83409 0.88017 0.85160 1.90497 1.56588 1.18387 1.85446 1.41927 1.58371 1.12598 1.08178 1.19698 1.42058 0.95941 0.88534 0.90392 1.26032 0.97275 0.96644 1.01375 1.69675 1.48717 1.09632 1.28085 0.84875 0.78167 0.77999 0.77311 1.19908 1.19466 1.19707 1.20761 0.97975 0.92973 0.83095 0.91558 1.22083 1.02273 0.95143 1.01837 1.45839 1.26041 1.55474 1.06786 1.18165 0.83868 0.79677 0.83778 1.90846 1.23587 1.44176 1.85766 1.21076 0.95080 1.03117 0.92547 1.67604 1.06877 1.06322 1.34970 1.23734 1.00826 0.95183 0.87436 1.22899 0.92866 0.94864 1.00682 1.22160 0.97203 0.96441 0.98263 1.19151 0.83582 0.95915 0.95594 1.91576 1.44372 1.78144 1.96692 0.90015 0.91565 0.91442 0.82999 0.90843 0.87992 0.76929 0.91313 0.90712 0.91297 0.93957 0.74178 0.77273 0.78313 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.68 71.98 0.62 -2.56 16 2 C 0.09 1.99 2.64 44.91 0.12 2.11 16 3 H 0.09 2.00 7.80 -2.39 -0.02 1.99 16 4 N -0.67 -21.09 5.23 -495.59 -2.59 -23.68 16 5 C 0.07 2.27 5.97 85.56 0.51 2.78 16 6 C 0.44 20.93 7.82 87.66 0.69 21.62 16 7 O -0.62 -34.92 15.78 -3.05 -0.05 -34.96 16 8 N -0.57 -29.60 5.29 -306.99 -1.62 -31.22 16 9 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 10 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 11 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 12 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 13 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 17 C 0.16 4.06 2.63 44.99 0.12 4.18 16 18 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 19 C -0.16 -4.01 8.86 71.98 0.64 -3.37 16 20 N -0.69 -15.50 4.98 -445.26 -2.22 -17.72 16 21 C 0.56 15.33 7.77 86.83 0.67 16.01 16 22 O -0.57 -20.26 14.98 -3.82 -0.06 -20.32 16 23 C 0.02 0.40 6.75 41.91 0.28 0.68 16 24 N -0.45 -6.56 9.54 -184.79 -1.76 -8.32 16 25 C 0.09 0.52 11.18 84.86 0.95 1.47 16 26 C -0.09 -0.24 10.11 22.43 0.23 -0.01 16 27 C -0.11 -0.99 10.16 22.50 0.23 -0.76 16 28 C 0.08 1.56 7.32 22.76 0.17 1.73 16 29 F -0.13 -3.38 15.55 44.97 0.70 -2.68 16 30 H 0.08 1.07 6.29 -2.39 -0.02 1.05 16 31 H 0.07 1.15 7.45 -2.38 -0.02 1.13 16 32 H 0.07 1.18 6.55 -2.39 -0.02 1.16 16 33 H 0.35 11.32 7.39 -89.69 -0.66 10.66 16 34 H 0.07 2.09 7.44 -2.39 -0.02 2.08 16 35 H 0.10 3.17 8.05 -2.39 -0.02 3.15 16 36 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.07 1.59 6.57 -2.39 -0.02 1.57 16 39 H 0.07 1.98 7.13 -2.39 -0.02 1.97 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.42 7.32 5.90 -92.71 -0.55 6.77 16 42 H 0.21 -0.46 8.06 -2.91 -0.02 -0.49 16 43 H 0.20 -1.31 8.06 -2.91 -0.02 -1.34 16 44 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -80.62 374.16 0.36 -80.26 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.86 Total: 37.45 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 6.50 Total: 25.30 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -7.91 Total: -130.55 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.11 Total: -55.28 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.70 Total: -2.68 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -80.62 0.36 -80.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733997858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.393 kcal (2) G-P(sol) polarization free energy of solvation -80.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds