Wall clock time and date at job start Tue Mar 31 2020 20:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47400 * 2 1 4 4 N 1.46501 * 109.47005 * 120.00013 * 2 1 3 5 5 C 1.34783 * 119.99488 * 274.99787 * 4 2 1 6 6 O 1.21609 * 120.00244 * 0.02562 * 5 4 2 7 7 C 1.47359 * 119.99576 * 179.97438 * 5 4 2 8 8 C 1.39953 * 120.22392 * 269.99807 * 7 5 4 9 9 F 1.35100 * 120.07292 * 0.02562 * 8 7 5 10 10 C 1.38129 * 119.85566 * 179.97438 * 8 7 5 11 11 C 1.38439 * 120.29660 * 0.02749 * 10 8 7 12 12 C 1.38089 * 120.45752 * 359.95236 * 11 10 8 13 13 C 1.38782 * 120.13545 * 359.78862 * 12 11 10 14 14 N 1.39285 * 120.15371 * 180.25398 * 13 12 11 15 15 C 1.34775 * 119.99766 * 24.83998 * 14 13 12 16 16 N 1.34778 * 120.00403 * 185.62943 * 15 14 13 17 17 O 1.21578 * 120.00198 * 5.62624 * 15 14 13 18 18 C 1.52997 * 109.47238 * 239.99496 * 2 1 3 19 19 H 1.09000 * 109.47602 * 300.00063 * 18 2 1 20 20 C 1.53005 * 109.47306 * 180.02562 * 18 2 1 21 21 N 1.46506 * 109.47106 * 59.99991 * 18 2 1 22 22 C 1.36936 * 120.00052 * 204.99554 * 21 18 2 23 23 H 1.07994 * 120.00237 * 0.02562 * 22 21 18 24 24 C 1.38816 * 119.99753 * 179.97438 * 22 21 18 25 25 N 1.31619 * 120.00098 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99935 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46721 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46978 * 120.00211 * 26 24 22 29 29 H 1.48492 * 109.47323 * 240.00185 * 26 24 22 30 30 H 1.09000 * 109.47186 * 300.00319 * 1 2 3 31 31 H 1.09000 * 109.47150 * 60.00340 * 1 2 3 32 32 H 1.09000 * 109.47400 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00449 * 95.00164 * 4 2 1 34 34 H 1.07997 * 119.85600 * 180.02562 * 10 8 7 35 35 H 1.08006 * 119.77497 * 179.97438 * 11 10 8 36 36 H 1.07995 * 119.93270 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00250 * 204.84252 * 14 13 12 38 38 H 0.96999 * 119.99500 * 359.97438 * 16 15 14 39 39 H 0.96996 * 120.01020 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.46746 * 300.00470 * 20 18 2 41 41 H 1.08995 * 109.46776 * 59.99916 * 20 18 2 42 42 H 1.09000 * 109.47253 * 180.02562 * 20 18 2 43 43 H 0.97003 * 119.99177 * 25.00580 * 21 18 2 44 44 H 0.97000 * 119.99964 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8573 1.1617 2.4118 7 6 2.6376 -0.7129 3.5605 8 6 1.7362 -1.3366 4.4306 9 9 0.4110 -1.3043 4.1698 10 6 2.2045 -1.9862 5.5561 11 6 3.5615 -2.0226 5.8276 12 6 4.4620 -1.4118 4.9775 13 6 4.0123 -0.7586 3.8386 14 7 4.9207 -0.1469 2.9780 15 6 6.1981 -0.5744 2.9320 16 7 7.1040 0.0880 2.1856 17 8 6.5332 -1.5576 3.5638 18 6 2.0400 -0.7213 -1.2491 19 1 1.6767 -1.7490 -1.2491 20 6 3.5700 -0.7219 -1.2488 21 7 1.5516 -0.0308 -2.4454 22 6 1.4210 -0.7140 -3.6250 23 1 1.6775 -1.7619 -3.6733 24 6 0.9577 -0.0598 -4.7583 25 7 0.6446 1.2172 -4.6992 26 14 0.7788 -0.9919 -6.3672 27 1 1.1928 -2.4043 -6.1696 28 1 -0.6383 -0.9491 -6.8090 29 1 1.6390 -0.3635 -7.4017 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 1.5089 -2.4678 6.2274 35 1 3.9184 -2.5325 6.7103 36 1 5.5188 -1.4457 5.1973 37 1 4.6342 0.5867 2.4119 38 1 6.8365 0.8722 1.6813 39 1 8.0232 -0.2199 2.1521 40 1 3.9337 0.3056 -1.2486 41 1 3.9329 -1.2359 -0.3588 42 1 3.9334 -1.2354 -2.1390 43 1 1.3210 0.9104 -2.4018 44 1 0.3213 1.6745 -5.4913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733998606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:11 Heat of formation + Delta-G solvation = -69.898001 kcal Electronic energy + Delta-G solvation = -29855.080768 eV Core-core repulsion = 25529.398334 eV Total energy + Delta-G solvation = -4325.682433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.12654 -41.23999 -39.80305 -38.43137 -36.75281 -35.15853 -34.07290 -34.00372 -32.06085 -31.12644 -29.71498 -29.29192 -28.45288 -24.56658 -24.04583 -23.79365 -22.60027 -21.35131 -20.57580 -20.16464 -18.91777 -18.71854 -17.89667 -17.38811 -17.01305 -16.61413 -16.10515 -15.73870 -15.56292 -15.32580 -15.20737 -14.76323 -14.72865 -14.46262 -13.96687 -13.70841 -13.43891 -13.32127 -13.08674 -12.90603 -12.52198 -12.37642 -12.11160 -11.88922 -11.75908 -11.24918 -11.01696 -10.98130 -10.89046 -10.76532 -10.56288 -10.23912 -10.13721 -10.05161 -9.93142 -9.71774 -9.11184 -9.10217 -8.86532 -8.47456 -7.05140 -5.83067 -3.12934 0.65837 0.87259 2.23471 2.45185 2.62940 3.10515 3.35509 3.39260 3.45474 3.47230 3.86605 3.99268 4.44382 4.54632 4.61606 4.74067 4.96386 5.02173 5.21959 5.42918 5.48570 5.59802 5.66793 5.67820 5.74065 5.82291 6.00285 6.02799 6.06953 6.13560 6.26165 6.31130 6.33190 6.43659 6.44114 6.53813 6.57388 6.75691 6.85956 6.91895 7.32129 7.51492 7.64349 8.04428 8.15222 8.34335 9.46139 10.00304 10.35503 11.39227 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.003092 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.481281 B = 9052.270037 C =10327.610773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.086 0.914 4 N -0.702 5.702 5 C 0.561 3.439 6 O -0.528 6.528 7 C -0.199 4.199 8 C 0.156 3.844 9 F -0.127 7.127 10 C -0.178 4.178 11 C -0.054 4.054 12 C -0.147 4.147 13 C 0.235 3.765 14 N -0.678 5.678 15 C 0.711 3.289 16 N -0.856 5.856 17 O -0.572 6.572 18 C 0.169 3.831 19 H 0.051 0.949 20 C -0.163 4.163 21 N -0.717 5.717 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.400 0.600 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.414 0.586 38 H 0.403 0.597 39 H 0.421 0.579 40 H 0.046 0.954 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.941 -4.449 21.006 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 H 0.104 0.896 4 N -0.352 5.352 5 C 0.345 3.655 6 O -0.404 6.404 7 C -0.206 4.206 8 C 0.135 3.865 9 F -0.105 7.105 10 C -0.198 4.198 11 C -0.073 4.073 12 C -0.167 4.167 13 C 0.136 3.864 14 N -0.324 5.324 15 C 0.410 3.590 16 N -0.423 5.423 17 O -0.449 6.449 18 C 0.058 3.942 19 H 0.069 0.931 20 C -0.223 4.223 21 N -0.359 5.359 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.235 0.765 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.251 0.749 38 H 0.232 0.768 39 H 0.254 0.746 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.220 0.780 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.871 -4.499 21.369 23.965 hybrid contribution -0.249 0.049 -1.666 1.685 sum 9.622 -4.451 19.703 22.374 Atomic orbital electron populations 1.22049 0.94596 1.02019 1.02468 1.21438 0.94828 0.97453 0.83304 0.89562 1.46167 1.65556 1.14065 1.09449 1.17857 0.78211 0.86659 0.82787 1.90845 1.49571 1.15279 1.84729 1.19554 0.92721 1.08684 0.99646 1.17261 0.77161 0.97451 0.94588 1.91563 1.30724 1.94418 1.93779 1.21054 0.97182 1.03881 0.97669 1.21014 0.91496 0.96162 0.98591 1.21467 1.02512 1.00305 0.92463 1.17044 0.85881 0.93989 0.89479 1.42501 1.08674 1.37860 1.43367 1.15820 0.80371 0.82521 0.80260 1.42964 1.12860 1.33916 1.52607 1.90952 1.79070 1.26892 1.47958 1.20383 0.92061 0.95698 0.86064 0.93079 1.22445 0.99170 1.00852 0.99877 1.42283 1.78208 1.10655 1.04756 1.19230 1.36890 0.93913 0.87035 0.91095 1.24738 1.01924 0.95971 0.98072 1.69669 1.50611 1.08634 1.28881 0.86132 0.77355 0.78787 0.83976 1.20567 1.21831 1.21881 0.93315 0.89953 0.92923 0.76546 0.84088 0.84224 0.82337 0.74906 0.76849 0.74599 0.93503 0.94768 0.92534 0.78039 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.33 37.16 0.35 -2.31 16 2 C 0.13 2.21 2.21 -67.93 -0.15 2.06 16 3 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 4 N -0.70 -9.71 4.38 -54.90 -0.24 -9.95 16 5 C 0.56 8.19 5.77 -12.55 -0.07 8.12 16 6 O -0.53 -9.44 16.77 5.27 0.09 -9.35 16 7 C -0.20 -2.49 5.65 -104.76 -0.59 -3.08 16 8 C 0.16 1.85 7.29 -38.98 -0.28 1.57 16 9 F -0.13 -1.69 16.83 2.25 0.04 -1.66 16 10 C -0.18 -1.60 10.00 -39.55 -0.40 -2.00 16 11 C -0.05 -0.44 10.02 -39.56 -0.40 -0.84 16 12 C -0.15 -1.49 8.70 -39.43 -0.34 -1.83 16 13 C 0.23 2.64 6.44 -83.49 -0.54 2.10 16 14 N -0.68 -6.75 5.17 -14.05 -0.07 -6.82 16 15 C 0.71 7.08 8.63 -86.92 -0.75 6.32 16 16 N -0.86 -5.24 8.88 27.63 0.25 -4.99 16 17 O -0.57 -7.35 14.33 5.30 0.08 -7.28 16 18 C 0.17 3.10 2.52 -67.93 -0.17 2.93 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 C -0.16 -2.69 9.34 37.16 0.35 -2.34 16 21 N -0.72 -16.85 4.43 -53.42 -0.24 -17.08 16 22 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 26 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.61 7.45 -51.93 -0.39 1.22 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 4.89 8.37 -40.82 -0.34 4.55 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.16 1.68 5.78 -52.49 -0.30 1.37 16 37 H 0.41 3.89 7.91 -40.82 -0.32 3.57 16 38 H 0.40 1.67 8.85 -40.82 -0.36 1.31 16 39 H 0.42 2.00 8.93 -40.82 -0.36 1.64 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.47 7.44 -51.93 -0.39 0.08 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.39 9.76 7.58 -40.82 -0.31 9.45 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -33.37 378.82 -7.61 -40.97 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -5.67 Total: 16.35 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.24 Total: 3.82 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: 0.42 Total: -65.37 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.16 Total: -16.63 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.37 -7.61 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733998606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.924 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds