Wall clock time and date at job start Tue Mar 31 2020 20:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47400 * 2 1 4 4 N 1.46501 * 109.47005 * 120.00013 * 2 1 3 5 5 C 1.34783 * 119.99488 * 274.99787 * 4 2 1 6 6 O 1.21609 * 120.00244 * 0.02562 * 5 4 2 7 7 C 1.47359 * 119.99576 * 179.97438 * 5 4 2 8 8 C 1.39953 * 120.22392 * 269.99807 * 7 5 4 9 9 F 1.35100 * 120.07292 * 0.02562 * 8 7 5 10 10 C 1.38129 * 119.85566 * 179.97438 * 8 7 5 11 11 C 1.38439 * 120.29660 * 0.02749 * 10 8 7 12 12 C 1.38089 * 120.45752 * 359.95236 * 11 10 8 13 13 C 1.38782 * 120.13545 * 359.78862 * 12 11 10 14 14 N 1.39285 * 120.15371 * 180.25398 * 13 12 11 15 15 C 1.34775 * 119.99766 * 24.83998 * 14 13 12 16 16 N 1.34778 * 120.00403 * 185.62943 * 15 14 13 17 17 O 1.21578 * 120.00198 * 5.62624 * 15 14 13 18 18 C 1.52997 * 109.47238 * 239.99496 * 2 1 3 19 19 H 1.09000 * 109.47602 * 300.00063 * 18 2 1 20 20 C 1.53005 * 109.47306 * 180.02562 * 18 2 1 21 21 N 1.46506 * 109.47106 * 59.99991 * 18 2 1 22 22 C 1.36936 * 120.00052 * 204.99554 * 21 18 2 23 23 H 1.07994 * 120.00237 * 0.02562 * 22 21 18 24 24 C 1.38816 * 119.99753 * 179.97438 * 22 21 18 25 25 N 1.31619 * 120.00098 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99935 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46721 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46978 * 120.00211 * 26 24 22 29 29 H 1.48492 * 109.47323 * 240.00185 * 26 24 22 30 30 H 1.09000 * 109.47186 * 300.00319 * 1 2 3 31 31 H 1.09000 * 109.47150 * 60.00340 * 1 2 3 32 32 H 1.09000 * 109.47400 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00449 * 95.00164 * 4 2 1 34 34 H 1.07997 * 119.85600 * 180.02562 * 10 8 7 35 35 H 1.08006 * 119.77497 * 179.97438 * 11 10 8 36 36 H 1.07995 * 119.93270 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00250 * 204.84252 * 14 13 12 38 38 H 0.96999 * 119.99500 * 359.97438 * 16 15 14 39 39 H 0.96996 * 120.01020 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.46746 * 300.00470 * 20 18 2 41 41 H 1.08995 * 109.46776 * 59.99916 * 20 18 2 42 42 H 1.09000 * 109.47253 * 180.02562 * 20 18 2 43 43 H 0.97003 * 119.99177 * 25.00580 * 21 18 2 44 44 H 0.97000 * 119.99964 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8573 1.1617 2.4118 7 6 2.6376 -0.7129 3.5605 8 6 1.7362 -1.3366 4.4306 9 9 0.4110 -1.3043 4.1698 10 6 2.2045 -1.9862 5.5561 11 6 3.5615 -2.0226 5.8276 12 6 4.4620 -1.4118 4.9775 13 6 4.0123 -0.7586 3.8386 14 7 4.9207 -0.1469 2.9780 15 6 6.1981 -0.5744 2.9320 16 7 7.1040 0.0880 2.1856 17 8 6.5332 -1.5576 3.5638 18 6 2.0400 -0.7213 -1.2491 19 1 1.6767 -1.7490 -1.2491 20 6 3.5700 -0.7219 -1.2488 21 7 1.5516 -0.0308 -2.4454 22 6 1.4210 -0.7140 -3.6250 23 1 1.6775 -1.7619 -3.6733 24 6 0.9577 -0.0598 -4.7583 25 7 0.6446 1.2172 -4.6992 26 14 0.7788 -0.9919 -6.3672 27 1 1.1928 -2.4043 -6.1696 28 1 -0.6383 -0.9491 -6.8090 29 1 1.6390 -0.3635 -7.4017 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 1.5089 -2.4678 6.2274 35 1 3.9184 -2.5325 6.7103 36 1 5.5188 -1.4457 5.1973 37 1 4.6342 0.5867 2.4119 38 1 6.8365 0.8722 1.6813 39 1 8.0232 -0.2199 2.1521 40 1 3.9337 0.3056 -1.2486 41 1 3.9329 -1.2359 -0.3588 42 1 3.9334 -1.2354 -2.1390 43 1 1.3210 0.9104 -2.4018 44 1 0.3213 1.6745 -5.4913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733998606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:10 Heat of formation + Delta-G solvation = -95.478320 kcal Electronic energy + Delta-G solvation = -29856.190014 eV Core-core repulsion = 25529.398334 eV Total energy + Delta-G solvation = -4326.791679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.06227 -42.08529 -40.90926 -39.33042 -38.22005 -35.95772 -35.64859 -34.72105 -33.66846 -32.29636 -30.75377 -30.35913 -30.15681 -25.93660 -25.59995 -24.56549 -23.95978 -22.12113 -21.73444 -21.61742 -19.74463 -19.47981 -19.39625 -18.81022 -17.79057 -17.50405 -17.27599 -16.74121 -16.50764 -16.46598 -16.20607 -16.13312 -15.67816 -15.53155 -15.37097 -15.22587 -14.86981 -14.68943 -14.21524 -14.11115 -13.71876 -13.51089 -13.25500 -13.17013 -12.96161 -12.86323 -12.76954 -12.62260 -12.30655 -12.10605 -11.77826 -11.74058 -11.52666 -11.37145 -11.15727 -11.00602 -10.77121 -10.24866 -9.95755 -9.25173 -9.02240 -7.92842 -5.21543 -0.15043 0.08634 1.27626 1.48603 1.49443 1.53189 1.58645 1.87596 1.96463 2.54765 2.58757 3.10700 3.31482 3.41580 3.46119 3.75374 3.86102 3.93293 3.99955 4.15475 4.22740 4.30418 4.31483 4.55697 4.71561 4.75080 4.84202 4.88918 4.90850 4.99805 5.05159 5.11715 5.24946 5.27780 5.34633 5.41865 5.48321 5.55427 5.61861 5.82022 5.88968 6.28137 6.34387 6.66822 6.99505 7.35252 7.36815 8.07517 8.31226 9.30555 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.003092 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.481281 B = 9052.270037 C =10327.610773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.072 0.928 4 N -0.691 5.691 5 C 0.568 3.432 6 O -0.565 6.565 7 C -0.215 4.215 8 C 0.136 3.864 9 F -0.141 7.141 10 C -0.167 4.167 11 C -0.037 4.037 12 C -0.152 4.152 13 C 0.227 3.773 14 N -0.676 5.676 15 C 0.708 3.292 16 N -0.837 5.837 17 O -0.602 6.602 18 C 0.168 3.832 19 H 0.055 0.945 20 C -0.151 4.151 21 N -0.728 5.728 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 0.968 3.032 27 H -0.265 1.265 28 H -0.297 1.297 29 H -0.296 1.296 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.157 0.843 37 H 0.415 0.585 38 H 0.414 0.586 39 H 0.429 0.571 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.373 0.627 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -6.378 22.693 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.090 0.910 4 N -0.341 5.341 5 C 0.353 3.647 6 O -0.443 6.443 7 C -0.222 4.222 8 C 0.116 3.884 9 F -0.120 7.120 10 C -0.186 4.186 11 C -0.056 4.056 12 C -0.173 4.173 13 C 0.128 3.872 14 N -0.322 5.322 15 C 0.407 3.593 16 N -0.406 5.406 17 O -0.481 6.481 18 C 0.059 3.941 19 H 0.073 0.927 20 C -0.211 4.211 21 N -0.368 5.368 22 C -0.364 4.364 23 H 0.096 0.904 24 C -0.265 4.265 25 N -0.619 5.619 26 Si 0.798 3.202 27 H -0.190 1.190 28 H -0.225 1.225 29 H -0.224 1.224 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.186 0.814 35 H 0.195 0.805 36 H 0.174 0.826 37 H 0.252 0.748 38 H 0.245 0.755 39 H 0.264 0.736 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.205 0.795 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.192 -6.469 23.071 26.446 hybrid contribution -0.588 0.616 -2.049 2.219 sum 10.604 -5.853 21.022 24.261 Atomic orbital electron populations 1.21939 0.95258 1.02051 1.01087 1.21025 0.94116 0.96706 0.83701 0.91018 1.45953 1.65211 1.14404 1.08544 1.18152 0.77128 0.86119 0.83253 1.90825 1.51159 1.17040 1.85323 1.19367 0.93475 1.10206 0.99189 1.17597 0.76503 0.98589 0.95744 1.91525 1.31751 1.94661 1.94023 1.21373 0.98036 1.02575 0.96652 1.21438 0.90721 0.94539 0.98872 1.21604 1.02821 1.00417 0.92417 1.17182 0.85512 0.94325 0.90132 1.42485 1.08683 1.37751 1.43269 1.15961 0.80536 0.82420 0.80418 1.42846 1.12682 1.33651 1.51455 1.90928 1.79509 1.28318 1.49378 1.20533 0.93267 0.95350 0.84928 0.92724 1.22257 0.97115 1.00971 1.00732 1.42426 1.78490 1.10226 1.05700 1.19588 1.34735 0.94193 0.87880 0.90398 1.25479 1.03008 0.96795 1.01248 1.69819 1.52616 1.10173 1.29267 0.85151 0.76594 0.78306 0.80172 1.18963 1.22462 1.22362 0.93481 0.92468 0.92119 0.75231 0.81354 0.80527 0.82574 0.74772 0.75524 0.73615 0.93796 0.91573 0.93887 0.79452 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.33 71.98 0.67 -4.43 16 2 C 0.15 4.93 2.21 44.99 0.10 5.03 16 3 H 0.07 2.62 7.58 -2.39 -0.02 2.61 16 4 N -0.69 -18.53 4.38 -445.87 -1.95 -20.48 16 5 C 0.57 16.36 5.77 86.64 0.50 16.86 16 6 O -0.56 -20.42 16.77 -4.06 -0.07 -20.49 16 7 C -0.21 -5.17 5.65 -19.95 -0.11 -5.28 16 8 C 0.14 3.02 7.29 22.66 0.17 3.19 16 9 F -0.14 -3.67 16.83 44.97 0.76 -2.91 16 10 C -0.17 -2.50 10.00 22.29 0.22 -2.28 16 11 C -0.04 -0.48 10.02 22.28 0.22 -0.26 16 12 C -0.15 -2.75 8.70 22.36 0.19 -2.56 16 13 C 0.23 4.81 6.44 38.60 0.25 5.06 16 14 N -0.68 -12.67 5.17 -316.63 -1.64 -14.30 16 15 C 0.71 13.04 8.63 179.05 1.55 14.59 16 16 N -0.84 -8.82 8.88 -184.75 -1.64 -10.46 16 17 O -0.60 -14.62 14.33 -3.96 -0.06 -14.67 16 18 C 0.17 6.07 2.52 44.99 0.11 6.18 16 19 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 20 C -0.15 -4.75 9.34 71.98 0.67 -4.08 16 21 N -0.73 -34.45 4.43 -322.93 -1.43 -35.88 16 22 C -0.23 -12.24 9.93 84.03 0.83 -11.40 16 23 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 25 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 26 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 2.30 7.45 -2.39 -0.02 2.29 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.41 9.38 8.37 -92.71 -0.78 8.61 16 34 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 36 H 0.16 3.00 5.78 -2.91 -0.02 2.98 16 37 H 0.42 7.46 7.91 -92.71 -0.73 6.72 16 38 H 0.41 2.69 8.85 -92.71 -0.82 1.87 16 39 H 0.43 3.30 8.93 -92.71 -0.83 2.47 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.65 7.44 -2.39 -0.02 1.63 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.37 19.42 7.58 -92.71 -0.70 18.72 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.92 378.82 -0.62 -73.54 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -2.75 Total: 39.18 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 5.84 Total: 17.03 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -6.38 Total: -138.80 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.12 Total: -35.16 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.76 Total: -2.91 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.92 -0.62 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733998606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.940 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds