Wall clock time and date at job start Tue Mar 31 2020 20:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47042 * 2 1 4 4 N 1.46499 * 109.46730 * 240.00449 * 2 1 3 5 5 C 1.36939 * 120.00125 * 84.99855 * 4 2 1 6 6 H 1.08006 * 119.99964 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99947 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00201 * 359.72378 * 7 5 4 9 9 Si 1.86803 * 119.99571 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46977 * 269.72211 * 9 7 5 11 11 H 1.48504 * 109.47340 * 29.72628 * 9 7 5 12 12 H 1.48503 * 109.47046 * 149.72142 * 9 7 5 13 13 C 1.52995 * 109.47245 * 120.00574 * 2 1 3 14 14 H 1.09001 * 109.47262 * 184.99431 * 13 2 1 15 15 C 1.53001 * 109.47357 * 64.99974 * 13 2 1 16 16 N 1.46493 * 109.47218 * 304.99719 * 13 2 1 17 17 C 1.34783 * 119.99957 * 205.00169 * 16 13 2 18 18 O 1.21604 * 120.00011 * 359.97438 * 17 16 13 19 19 C 1.47358 * 119.99675 * 180.02562 * 17 16 13 20 20 C 1.39951 * 120.22185 * 89.72253 * 19 17 16 21 21 F 1.35096 * 120.07583 * 0.02562 * 20 19 17 22 22 C 1.38145 * 119.85139 * 179.76540 * 20 19 17 23 23 C 1.38443 * 120.29519 * 0.49053 * 22 20 19 24 24 C 1.38085 * 120.45443 * 359.78498 * 23 22 20 25 25 C 1.38783 * 120.14172 * 359.95446 * 24 23 22 26 26 N 1.39285 * 120.14967 * 179.97438 * 25 24 23 27 27 C 1.34777 * 120.00037 * 24.84931 * 26 25 24 28 28 N 1.34775 * 120.00152 * 185.61844 * 27 26 25 29 29 O 1.21580 * 119.99938 * 5.62292 * 27 26 25 30 30 H 1.08991 * 109.47314 * 59.99261 * 1 2 3 31 31 H 1.08999 * 109.46735 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46474 * 299.99330 * 1 2 3 33 33 H 0.97004 * 120.00389 * 264.99554 * 4 2 1 34 34 H 0.96998 * 119.99743 * 0.27735 * 8 7 5 35 35 H 1.08999 * 109.46942 * 300.00181 * 15 13 2 36 36 H 1.09004 * 109.47187 * 59.99711 * 15 13 2 37 37 H 1.09000 * 109.47566 * 180.02562 * 15 13 2 38 38 H 0.96999 * 119.99952 * 25.00191 * 16 13 2 39 39 H 1.07991 * 119.84978 * 180.27848 * 22 20 19 40 40 H 1.08003 * 119.77004 * 179.76710 * 23 22 20 41 41 H 1.08005 * 119.92888 * 179.97438 * 24 23 22 42 42 H 0.97003 * 119.99850 * 204.84741 * 26 25 24 43 43 H 0.97001 * 119.99501 * 0.02562 * 28 27 26 44 44 H 0.97001 * 120.00232 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0073 -2.3758 6 1 1.8917 1.0405 -2.4243 7 6 2.6121 -0.6615 -3.5091 8 7 2.9308 -1.9371 -3.4487 9 14 2.7911 0.2707 -5.1180 10 1 1.5259 0.1740 -5.8895 11 1 3.0893 1.6973 -4.8330 12 1 3.9004 -0.3181 -5.9105 13 6 2.0401 -0.7213 1.2491 14 1 3.1264 -0.6445 1.2950 15 6 1.6353 -2.1956 1.1878 16 7 1.4560 -0.1039 2.4423 17 6 2.0915 -0.1941 3.6275 18 8 3.1495 -0.7885 3.7064 19 6 1.5037 0.4265 4.8277 20 6 0.6249 -0.3009 5.6383 21 9 0.3122 -1.5768 5.3232 22 6 0.0820 0.2869 6.7645 23 6 0.3955 1.5957 7.0892 24 6 1.2567 2.3267 6.2951 25 6 1.8169 1.7528 5.1624 26 7 2.6852 2.4902 4.3610 27 6 3.3745 3.5224 4.8863 28 7 4.1269 4.3059 4.0886 29 8 3.3176 3.7467 6.0799 30 1 -0.3633 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 2.2490 -1.6317 -1.1528 34 1 2.8382 -2.4210 -2.6132 35 1 0.5490 -2.2725 1.1418 36 1 2.0699 -2.6550 0.2999 37 1 1.9983 -2.7094 2.0779 38 1 0.6120 0.3699 2.3794 39 1 -0.5926 -0.2760 7.3924 40 1 -0.0367 2.0480 7.9695 41 1 1.4952 3.3473 6.5561 42 1 2.7938 2.2609 3.4247 43 1 4.1720 4.1271 3.1363 44 1 4.6227 5.0490 4.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733998607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:14 Heat of formation + Delta-G solvation = -64.981581 kcal Electronic energy + Delta-G solvation = -29778.220170 eV Core-core repulsion = 25452.750928 eV Total energy + Delta-G solvation = -4325.469241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.17042 -41.27647 -39.88963 -38.50741 -37.04161 -35.19905 -34.23530 -34.09786 -32.23762 -31.12193 -29.73018 -29.19032 -28.14917 -24.88498 -24.11702 -23.83186 -23.03396 -21.39205 -20.84837 -19.51868 -19.01498 -18.75625 -17.99206 -17.52171 -17.04332 -16.64463 -16.24575 -15.68379 -15.65522 -15.46371 -15.32600 -14.84932 -14.77472 -14.69933 -14.12322 -13.99026 -13.67279 -13.40836 -13.16407 -12.90703 -12.65881 -12.43608 -12.10477 -12.02280 -11.82181 -11.60121 -11.01470 -10.89884 -10.70938 -10.58584 -10.49831 -10.31276 -10.15389 -10.09351 -9.98926 -9.30338 -9.15329 -9.03831 -8.99910 -8.51326 -7.15469 -6.17941 -3.19607 0.61832 0.83445 2.19744 2.39971 2.60352 3.04465 3.29109 3.46303 3.50800 3.64922 3.83102 3.95713 4.40089 4.56310 4.60837 4.70838 4.92905 4.98795 5.17396 5.30051 5.40808 5.45123 5.56939 5.61834 5.64304 5.70188 5.88425 5.96108 5.97349 6.03746 6.10938 6.21506 6.22521 6.27144 6.41402 6.46364 6.52922 6.53883 6.68087 6.90783 7.28965 7.42164 7.71749 8.01815 8.08970 8.67304 9.12545 9.98767 10.12499 11.30018 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.003088 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.049958 B = 9065.882641 C =10467.538728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.175 3.825 3 H 0.052 0.948 4 N -0.730 5.730 5 C -0.335 4.335 6 H 0.065 0.935 7 C -0.042 4.042 8 N -0.941 5.941 9 Si 1.083 2.917 10 H -0.295 1.295 11 H -0.295 1.295 12 H -0.288 1.288 13 C 0.132 3.868 14 H 0.089 0.911 15 C -0.160 4.160 16 N -0.710 5.710 17 C 0.559 3.441 18 O -0.520 6.520 19 C -0.198 4.198 20 C 0.155 3.845 21 F -0.127 7.127 22 C -0.177 4.177 23 C -0.053 4.053 24 C -0.146 4.146 25 C 0.233 3.767 26 N -0.678 5.678 27 C 0.712 3.288 28 N -0.856 5.856 29 O -0.572 6.572 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.370 0.630 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.400 0.600 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.160 0.840 42 H 0.413 0.587 43 H 0.403 0.597 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 11.089 19.658 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.065 3.935 3 H 0.070 0.930 4 N -0.375 5.375 5 C -0.466 4.466 6 H 0.083 0.917 7 C -0.240 4.240 8 N -0.586 5.586 9 Si 0.914 3.086 10 H -0.223 1.223 11 H -0.222 1.222 12 H -0.214 1.214 13 C 0.028 3.972 14 H 0.107 0.893 15 C -0.218 4.218 16 N -0.363 5.363 17 C 0.343 3.657 18 O -0.395 6.395 19 C -0.206 4.206 20 C 0.135 3.865 21 F -0.105 7.105 22 C -0.197 4.197 23 C -0.072 4.072 24 C -0.167 4.167 25 C 0.135 3.865 26 N -0.324 5.324 27 C 0.411 3.589 28 N -0.424 5.424 29 O -0.448 6.448 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.205 0.795 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.237 0.763 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.177 0.823 42 H 0.249 0.751 43 H 0.232 0.768 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.624 10.841 18.991 22.351 hybrid contribution -0.629 -0.143 0.689 0.944 sum -5.253 10.698 19.680 23.007 Atomic orbital electron populations 1.22532 0.99149 1.01386 0.99870 1.20274 0.92250 0.95382 0.85632 0.93017 1.42457 1.79340 1.09971 1.05742 1.20032 1.42462 0.95185 0.88890 0.91665 1.25779 0.99108 0.97491 1.01648 1.70852 1.50732 1.08445 1.28529 0.83196 0.76531 0.73779 0.75132 1.22287 1.22161 1.21352 1.21438 0.98996 0.93193 0.83563 0.89286 1.22133 1.01787 0.95626 1.02230 1.46365 1.25657 1.56211 1.08050 1.17916 0.84718 0.80255 0.82838 1.90848 1.21919 1.41557 1.85187 1.19580 1.06117 0.93916 1.00952 1.17262 0.95542 0.79245 0.94466 1.91559 1.91100 1.35307 1.92531 1.21063 1.04260 0.96996 0.97401 1.21024 0.94916 0.92669 0.98613 1.21474 0.97687 1.02770 0.94722 1.17058 0.89755 0.87519 0.92193 1.42473 1.43984 1.31962 1.13941 1.15814 0.78514 0.79390 0.85229 1.42964 1.52754 1.34790 1.11860 1.90949 1.67672 1.73123 1.13103 0.92217 0.92798 0.94782 0.79478 0.93293 0.92249 0.90911 0.92760 0.76340 0.84035 0.84150 0.82269 0.75099 0.76784 0.74584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.01 37.16 0.33 -2.38 16 2 C 0.18 3.17 2.93 -67.93 -0.20 2.97 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 N -0.73 -17.08 5.03 -53.43 -0.27 -17.35 16 5 C -0.33 -8.91 9.93 -15.06 -0.15 -9.06 16 6 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 7 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 8 N -0.94 -28.32 13.70 55.49 0.76 -27.56 16 9 Si 1.08 25.09 29.92 -169.99 -5.09 20.00 16 10 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.13 2.16 2.62 -67.94 -0.18 1.98 16 14 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 15 C -0.16 -2.64 9.00 37.16 0.33 -2.31 16 16 N -0.71 -9.49 4.99 -54.91 -0.27 -9.76 16 17 C 0.56 8.27 5.77 -12.55 -0.07 8.20 16 18 O -0.52 -9.76 16.77 5.27 0.09 -9.67 16 19 C -0.20 -2.51 5.65 -104.76 -0.59 -3.10 16 20 C 0.16 1.84 7.29 -38.97 -0.28 1.56 16 21 F -0.13 -1.69 16.83 2.25 0.04 -1.65 16 22 C -0.18 -1.59 10.01 -39.54 -0.40 -1.99 16 23 C -0.05 -0.44 10.02 -39.56 -0.40 -0.83 16 24 C -0.15 -1.49 8.70 -39.44 -0.34 -1.83 16 25 C 0.23 2.67 6.44 -83.49 -0.54 2.13 16 26 N -0.68 -6.93 5.16 -14.05 -0.07 -7.01 16 27 C 0.71 7.36 8.63 -86.92 -0.75 6.61 16 28 N -0.86 -5.42 8.88 27.63 0.25 -5.17 16 29 O -0.57 -7.59 14.33 5.30 0.08 -7.52 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.89 6.57 -51.93 -0.34 0.55 16 32 H 0.03 0.42 6.29 -51.93 -0.33 0.10 16 33 H 0.37 9.01 4.60 -40.82 -0.19 8.82 16 34 H 0.26 7.58 6.77 -40.82 -0.28 7.31 16 35 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 36 H 0.07 1.31 6.29 -51.93 -0.33 0.98 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.40 4.51 6.56 -40.82 -0.27 4.25 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.16 1.69 5.77 -52.48 -0.30 1.38 16 42 H 0.41 3.81 7.91 -40.82 -0.32 3.49 16 43 H 0.40 1.74 8.85 -40.82 -0.36 1.38 16 44 H 0.42 2.04 8.93 -40.82 -0.36 1.67 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -35.25 369.42 -7.38 -42.63 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -5.13 Total: 16.83 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -3.32 Total: 0.66 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: 0.39 Total: -66.85 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.16 Total: -17.19 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.25 -7.38 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733998607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.348 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds