Wall clock time and date at job start Tue Mar 31 2020 20:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47042 * 2 1 4 4 N 1.46499 * 109.46730 * 240.00449 * 2 1 3 5 5 C 1.36939 * 120.00125 * 84.99855 * 4 2 1 6 6 H 1.08006 * 119.99964 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99947 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00201 * 359.72378 * 7 5 4 9 9 Si 1.86803 * 119.99571 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46977 * 269.72211 * 9 7 5 11 11 H 1.48504 * 109.47340 * 29.72628 * 9 7 5 12 12 H 1.48503 * 109.47046 * 149.72142 * 9 7 5 13 13 C 1.52995 * 109.47245 * 120.00574 * 2 1 3 14 14 H 1.09001 * 109.47262 * 184.99431 * 13 2 1 15 15 C 1.53001 * 109.47357 * 64.99974 * 13 2 1 16 16 N 1.46493 * 109.47218 * 304.99719 * 13 2 1 17 17 C 1.34783 * 119.99957 * 205.00169 * 16 13 2 18 18 O 1.21604 * 120.00011 * 359.97438 * 17 16 13 19 19 C 1.47358 * 119.99675 * 180.02562 * 17 16 13 20 20 C 1.39951 * 120.22185 * 89.72253 * 19 17 16 21 21 F 1.35096 * 120.07583 * 0.02562 * 20 19 17 22 22 C 1.38145 * 119.85139 * 179.76540 * 20 19 17 23 23 C 1.38443 * 120.29519 * 0.49053 * 22 20 19 24 24 C 1.38085 * 120.45443 * 359.78498 * 23 22 20 25 25 C 1.38783 * 120.14172 * 359.95446 * 24 23 22 26 26 N 1.39285 * 120.14967 * 179.97438 * 25 24 23 27 27 C 1.34777 * 120.00037 * 24.84931 * 26 25 24 28 28 N 1.34775 * 120.00152 * 185.61844 * 27 26 25 29 29 O 1.21580 * 119.99938 * 5.62292 * 27 26 25 30 30 H 1.08991 * 109.47314 * 59.99261 * 1 2 3 31 31 H 1.08999 * 109.46735 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46474 * 299.99330 * 1 2 3 33 33 H 0.97004 * 120.00389 * 264.99554 * 4 2 1 34 34 H 0.96998 * 119.99743 * 0.27735 * 8 7 5 35 35 H 1.08999 * 109.46942 * 300.00181 * 15 13 2 36 36 H 1.09004 * 109.47187 * 59.99711 * 15 13 2 37 37 H 1.09000 * 109.47566 * 180.02562 * 15 13 2 38 38 H 0.96999 * 119.99952 * 25.00191 * 16 13 2 39 39 H 1.07991 * 119.84978 * 180.27848 * 22 20 19 40 40 H 1.08003 * 119.77004 * 179.76710 * 23 22 20 41 41 H 1.08005 * 119.92888 * 179.97438 * 24 23 22 42 42 H 0.97003 * 119.99850 * 204.84741 * 26 25 24 43 43 H 0.97001 * 119.99501 * 0.02562 * 28 27 26 44 44 H 0.97001 * 120.00232 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1490 -0.0073 -2.3758 6 1 1.8917 1.0405 -2.4243 7 6 2.6121 -0.6615 -3.5091 8 7 2.9308 -1.9371 -3.4487 9 14 2.7911 0.2707 -5.1180 10 1 1.5259 0.1740 -5.8895 11 1 3.0893 1.6973 -4.8330 12 1 3.9004 -0.3181 -5.9105 13 6 2.0401 -0.7213 1.2491 14 1 3.1264 -0.6445 1.2950 15 6 1.6353 -2.1956 1.1878 16 7 1.4560 -0.1039 2.4423 17 6 2.0915 -0.1941 3.6275 18 8 3.1495 -0.7885 3.7064 19 6 1.5037 0.4265 4.8277 20 6 0.6249 -0.3009 5.6383 21 9 0.3122 -1.5768 5.3232 22 6 0.0820 0.2869 6.7645 23 6 0.3955 1.5957 7.0892 24 6 1.2567 2.3267 6.2951 25 6 1.8169 1.7528 5.1624 26 7 2.6852 2.4902 4.3610 27 6 3.3745 3.5224 4.8863 28 7 4.1269 4.3059 4.0886 29 8 3.3176 3.7467 6.0799 30 1 -0.3633 0.5139 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 2.2490 -1.6317 -1.1528 34 1 2.8382 -2.4210 -2.6132 35 1 0.5490 -2.2725 1.1418 36 1 2.0699 -2.6550 0.2999 37 1 1.9983 -2.7094 2.0779 38 1 0.6120 0.3699 2.3794 39 1 -0.5926 -0.2760 7.3924 40 1 -0.0367 2.0480 7.9695 41 1 1.4952 3.3473 6.5561 42 1 2.7938 2.2609 3.4247 43 1 4.1720 4.1271 3.1363 44 1 4.6227 5.0490 4.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733998607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:13 Heat of formation + Delta-G solvation = -92.730047 kcal Electronic energy + Delta-G solvation = -29779.423433 eV Core-core repulsion = 25452.750928 eV Total energy + Delta-G solvation = -4326.672505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.10328 -42.14648 -41.02017 -39.42892 -38.48869 -36.02537 -35.92299 -34.77358 -33.78653 -32.25368 -30.71794 -30.39106 -29.76687 -26.16189 -25.75466 -24.61801 -24.47321 -22.19467 -21.98864 -20.92460 -19.87932 -19.54526 -19.50581 -18.98400 -17.80495 -17.49493 -17.44515 -16.92135 -16.67331 -16.43405 -16.26019 -16.08226 -15.98910 -15.67364 -15.58263 -15.38995 -15.09604 -14.77354 -14.28971 -14.04978 -13.75805 -13.54790 -13.33634 -13.20803 -13.13741 -12.89439 -12.66439 -12.39028 -12.05558 -11.85952 -11.82065 -11.80007 -11.42199 -11.32228 -11.18846 -10.95292 -10.82796 -10.33878 -10.00414 -9.29922 -9.14435 -8.36292 -5.31659 -0.19832 0.04313 1.20260 1.48326 1.60121 1.70449 1.82157 1.83856 1.88887 2.49659 2.73586 3.06731 3.26218 3.41183 3.42566 3.73699 3.76961 3.83218 3.87785 3.95172 4.16974 4.19765 4.27069 4.47198 4.54296 4.69790 4.72572 4.83138 4.84083 4.88917 5.01598 5.06147 5.12523 5.21003 5.29997 5.31102 5.51243 5.56705 5.63207 5.78135 5.84209 6.27035 6.51293 6.61732 6.93243 7.10248 7.31465 7.99899 8.10915 9.15320 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.003088 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.049958 B = 9065.882641 C =10467.538728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.174 3.826 3 H 0.056 0.944 4 N -0.745 5.745 5 C -0.325 4.325 6 H 0.072 0.928 7 C -0.105 4.105 8 N -0.978 5.978 9 Si 1.129 2.871 10 H -0.286 1.286 11 H -0.270 1.270 12 H -0.298 1.298 13 C 0.148 3.852 14 H 0.066 0.934 15 C -0.153 4.153 16 N -0.693 5.693 17 C 0.566 3.434 18 O -0.565 6.565 19 C -0.216 4.216 20 C 0.137 3.863 21 F -0.140 7.140 22 C -0.165 4.165 23 C -0.036 4.036 24 C -0.151 4.151 25 C 0.224 3.776 26 N -0.677 5.677 27 C 0.706 3.294 28 N -0.837 5.837 29 O -0.603 6.603 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.362 0.638 34 H 0.244 0.756 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.414 0.586 39 H 0.171 0.829 40 H 0.179 0.821 41 H 0.158 0.842 42 H 0.415 0.585 43 H 0.415 0.585 44 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 13.222 21.177 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.065 3.935 3 H 0.074 0.926 4 N -0.389 5.389 5 C -0.456 4.456 6 H 0.090 0.910 7 C -0.297 4.297 8 N -0.626 5.626 9 Si 0.954 3.046 10 H -0.213 1.213 11 H -0.195 1.195 12 H -0.225 1.225 13 C 0.042 3.958 14 H 0.084 0.916 15 C -0.211 4.211 16 N -0.346 5.346 17 C 0.351 3.649 18 O -0.444 6.444 19 C -0.223 4.223 20 C 0.116 3.884 21 F -0.119 7.119 22 C -0.185 4.185 23 C -0.055 4.055 24 C -0.171 4.171 25 C 0.125 3.875 26 N -0.323 5.323 27 C 0.405 3.595 28 N -0.406 5.406 29 O -0.483 6.483 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.196 0.804 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.253 0.747 39 H 0.188 0.812 40 H 0.196 0.804 41 H 0.175 0.825 42 H 0.252 0.748 43 H 0.246 0.754 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.326 13.041 20.526 25.128 hybrid contribution -0.142 -0.734 0.356 0.829 sum -6.468 12.307 20.882 25.087 Atomic orbital electron populations 1.22371 0.96844 1.01515 1.01217 1.20444 0.93615 0.95048 0.84374 0.92621 1.42669 1.79771 1.09836 1.06660 1.20388 1.39978 0.95496 0.89785 0.90976 1.27128 0.99720 0.97596 1.05211 1.70963 1.53761 1.09820 1.28088 0.82605 0.76316 0.73923 0.71765 1.21343 1.19485 1.22519 1.21013 0.97722 0.93043 0.84008 0.91617 1.22050 1.02399 0.95587 1.01058 1.46105 1.25870 1.55713 1.06925 1.18239 0.83894 0.79266 0.83478 1.90825 1.24002 1.43652 1.85892 1.19393 1.07698 0.94649 1.00562 1.17591 0.96337 0.78879 0.95580 1.91524 1.91303 1.36262 1.92794 1.21396 1.03591 0.97265 0.96218 1.21459 0.93187 0.91992 0.98816 1.21613 0.98036 1.02930 0.94554 1.17215 0.90127 0.87237 0.92875 1.42465 1.43910 1.31912 1.13987 1.15995 0.78782 0.79594 0.85141 1.42836 1.51463 1.34078 1.12196 1.90921 1.68881 1.73986 1.14492 0.93658 0.93291 0.90622 0.80411 0.94599 0.90940 0.92786 0.93186 0.74723 0.81178 0.80361 0.82512 0.74808 0.75442 0.73554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.01 71.98 0.65 -4.18 16 2 C 0.17 6.17 2.93 44.99 0.13 6.30 16 3 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 4 N -0.75 -35.19 5.03 -322.94 -1.62 -36.82 16 5 C -0.33 -17.26 9.93 84.03 0.83 -16.43 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 7 C -0.11 -5.93 5.50 84.86 0.47 -5.46 16 8 N -0.98 -60.34 13.70 21.65 0.30 -60.04 16 9 Si 1.13 50.44 29.92 68.60 2.05 52.49 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 13 C 0.15 4.81 2.62 44.99 0.12 4.92 16 14 H 0.07 2.49 7.58 -2.39 -0.02 2.47 16 15 C -0.15 -5.13 9.00 71.98 0.65 -4.48 16 16 N -0.69 -17.95 4.99 -445.89 -2.22 -20.17 16 17 C 0.57 16.65 5.77 86.64 0.50 17.15 16 18 O -0.57 -21.73 16.77 -4.04 -0.07 -21.80 16 19 C -0.22 -5.26 5.65 -19.96 -0.11 -5.38 16 20 C 0.14 3.02 7.29 22.66 0.17 3.19 16 21 F -0.14 -3.61 16.83 44.97 0.76 -2.85 16 22 C -0.17 -2.44 10.01 22.30 0.22 -2.21 16 23 C -0.04 -0.46 10.02 22.28 0.22 -0.24 16 24 C -0.15 -2.75 8.70 22.36 0.19 -2.56 16 25 C 0.22 4.86 6.44 38.60 0.25 5.11 16 26 N -0.68 -13.28 5.16 -316.63 -1.64 -14.92 16 27 C 0.71 13.93 8.63 179.05 1.55 15.47 16 28 N -0.84 -9.49 8.88 -184.75 -1.64 -11.13 16 29 O -0.60 -15.51 14.33 -3.97 -0.06 -15.56 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.54 6.57 -2.39 -0.02 1.52 16 32 H 0.08 1.64 6.29 -2.39 -0.02 1.63 16 33 H 0.36 18.20 4.60 -92.71 -0.43 17.78 16 34 H 0.24 15.01 6.77 -92.71 -0.63 14.39 16 35 H 0.07 2.21 6.57 -2.39 -0.02 2.20 16 36 H 0.05 2.02 6.29 -2.38 -0.02 2.01 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.41 8.48 6.56 -92.71 -0.61 7.87 16 39 H 0.17 1.53 8.06 -2.92 -0.02 1.50 16 40 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.16 3.04 5.77 -2.91 -0.02 3.02 16 42 H 0.42 7.38 7.91 -92.71 -0.73 6.65 16 43 H 0.41 2.96 8.85 -92.71 -0.82 2.14 16 44 H 0.43 3.54 8.93 -92.71 -0.83 2.71 16 Total: -1.00 -78.32 369.42 -0.45 -78.77 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -2.15 Total: 40.81 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 5.83 Total: 11.20 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -6.83 Total: -143.07 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.12 Total: -37.36 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.76 Total: -2.85 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -78.32 -0.45 -78.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733998607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.957 kcal (2) G-P(sol) polarization free energy of solvation -78.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds