Wall clock time and date at job start Tue Mar 31 2020 20:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46806 * 2 1 4 4 N 1.46498 * 109.47188 * 120.00352 * 2 1 3 5 5 C 1.36941 * 119.99806 * 275.00119 * 4 2 1 6 6 H 1.07999 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99886 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99882 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99861 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47094 * 60.00201 * 9 7 5 11 11 H 1.48499 * 109.47476 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47279 * 300.00213 * 9 7 5 13 13 C 1.53002 * 109.47063 * 240.00108 * 2 1 3 14 14 H 1.08998 * 109.47122 * 174.99800 * 13 2 1 15 15 C 1.53002 * 109.47278 * 295.00092 * 13 2 1 16 16 N 1.46501 * 109.46959 * 55.00232 * 13 2 1 17 17 C 1.34776 * 119.99970 * 155.00334 * 16 13 2 18 18 O 1.21609 * 119.99853 * 359.97438 * 17 16 13 19 19 C 1.47359 * 120.00102 * 179.97438 * 17 16 13 20 20 C 1.39945 * 120.22527 * 269.99618 * 19 17 16 21 21 F 1.35104 * 120.07260 * 0.02562 * 20 19 17 22 22 C 1.38133 * 119.85503 * 179.97438 * 20 19 17 23 23 C 1.38438 * 120.29795 * 0.02562 * 22 20 19 24 24 C 1.38090 * 120.45197 * 359.95788 * 23 22 20 25 25 C 1.38774 * 120.14175 * 359.78651 * 24 23 22 26 26 N 1.39287 * 120.15095 * 180.25319 * 25 24 23 27 27 C 1.34774 * 120.00345 * 24.83934 * 26 25 24 28 28 N 1.34769 * 120.00262 * 185.62500 * 27 26 25 29 29 O 1.21581 * 119.99439 * 5.62869 * 27 26 25 30 30 H 1.08996 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46943 * 300.00092 * 1 2 3 32 32 H 1.09002 * 109.46641 * 59.99796 * 1 2 3 33 33 H 0.96994 * 120.00436 * 94.99646 * 4 2 1 34 34 H 0.97000 * 119.99541 * 179.97438 * 8 7 5 35 35 H 1.08990 * 109.47055 * 179.97438 * 15 13 2 36 36 H 1.08999 * 109.46957 * 300.00322 * 15 13 2 37 37 H 1.08997 * 109.46758 * 59.99786 * 15 13 2 38 38 H 0.97005 * 120.00586 * 334.99355 * 16 13 2 39 39 H 1.07996 * 119.85045 * 180.02562 * 22 20 19 40 40 H 1.08000 * 119.77649 * 179.97438 * 23 22 20 41 41 H 1.08001 * 119.92738 * 180.02562 * 24 23 22 42 42 H 0.97008 * 119.99878 * 204.84206 * 26 25 24 43 43 H 0.97007 * 120.00369 * 0.02562 * 28 27 26 44 44 H 0.97002 * 120.00389 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4241 7 6 2.6114 -0.6621 3.5092 8 7 2.9235 -1.9394 3.4503 9 14 2.7904 0.2699 5.1181 10 1 1.4683 0.8077 5.5284 11 1 3.2993 -0.6485 6.1683 12 1 3.7464 1.3917 4.9367 13 6 2.0401 -0.7212 -1.2493 14 1 3.1264 -0.6443 -1.2952 15 6 1.6353 -2.1955 -1.1881 16 7 1.4559 -0.1035 -2.4424 17 6 2.0913 -0.1937 -3.6276 18 8 3.1497 -0.7874 -3.7064 19 6 1.5035 0.4271 -4.8278 20 6 0.6292 -0.3020 -5.6417 21 9 0.3200 -1.5795 -5.3292 22 6 0.0821 0.2877 -6.7647 23 6 0.3953 1.5966 -7.0890 24 6 1.2563 2.3277 -6.2945 25 6 1.8123 1.7553 -5.1592 26 7 2.6766 2.4942 -4.3548 27 6 2.6047 3.8400 -4.3469 28 7 3.5126 4.5593 -3.6579 29 8 1.7207 4.4051 -4.9612 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 3.2468 -2.3966 4.2423 35 1 1.9982 -2.7091 -2.0782 36 1 2.0699 -2.6550 -0.3003 37 1 0.5490 -2.2723 -1.1421 38 1 0.6118 0.3702 -2.3795 39 1 -0.5929 -0.2749 -7.3925 40 1 -0.0369 2.0492 -7.9692 41 1 1.4944 3.3483 -6.5553 42 1 3.3304 2.0402 -3.8003 43 1 4.2181 4.1085 -3.1680 44 1 3.4606 5.5279 -3.6519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733998608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:17 Heat of formation + Delta-G solvation = -65.504998 kcal Electronic energy + Delta-G solvation = -29804.161872 eV Core-core repulsion = 25478.669934 eV Total energy + Delta-G solvation = -4325.491938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.12643 -41.23847 -39.82383 -38.45338 -36.90636 -35.15562 -34.06950 -33.97899 -32.09602 -31.09085 -29.69964 -29.17178 -28.25138 -24.81168 -24.25535 -23.79233 -22.94964 -21.35163 -20.72840 -19.36473 -18.90933 -18.72185 -17.98340 -17.36494 -17.01370 -16.61565 -16.08730 -15.73600 -15.54897 -15.31956 -15.19652 -14.82100 -14.76141 -14.43419 -14.23713 -13.94150 -13.51791 -13.36390 -12.95426 -12.82218 -12.51932 -12.37888 -12.05384 -11.99053 -11.67349 -11.34289 -10.99235 -10.97980 -10.86472 -10.56290 -10.53224 -10.34034 -10.13207 -10.07653 -9.98396 -9.69355 -9.11154 -8.99638 -8.92684 -8.47395 -7.06216 -5.83263 -3.13262 0.65906 0.87306 2.23762 2.45191 2.63078 3.11314 3.35743 3.39402 3.44348 3.45267 3.86881 3.99423 4.45013 4.54034 4.61390 4.74198 4.96572 5.02261 5.27567 5.40476 5.48916 5.57994 5.58137 5.67609 5.73649 5.77154 6.00297 6.01852 6.07024 6.09761 6.23997 6.26533 6.34650 6.39939 6.44450 6.56896 6.59305 6.65644 6.81996 7.02157 7.32517 7.51494 7.62656 8.04683 8.15546 8.35054 9.46313 10.01117 10.36065 11.39129 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.003168 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.765197 B = 8835.851471 C =10275.142746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.170 3.830 3 H 0.050 0.950 4 N -0.719 5.719 5 C -0.244 4.244 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.134 3.866 14 H 0.089 0.911 15 C -0.160 4.160 16 N -0.704 5.704 17 C 0.560 3.440 18 O -0.528 6.528 19 C -0.199 4.199 20 C 0.156 3.844 21 F -0.127 7.127 22 C -0.178 4.178 23 C -0.054 4.054 24 C -0.147 4.147 25 C 0.234 3.766 26 N -0.678 5.678 27 C 0.711 3.289 28 N -0.855 5.855 29 O -0.572 6.572 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.387 0.613 34 H 0.257 0.743 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.401 0.599 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.159 0.841 42 H 0.415 0.585 43 H 0.403 0.597 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 9.560 -21.155 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.059 3.941 3 H 0.068 0.932 4 N -0.362 5.362 5 C -0.375 4.375 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.030 3.970 14 H 0.108 0.892 15 C -0.218 4.218 16 N -0.356 5.356 17 C 0.344 3.656 18 O -0.404 6.404 19 C -0.206 4.206 20 C 0.135 3.865 21 F -0.105 7.105 22 C -0.198 4.198 23 C -0.073 4.073 24 C -0.167 4.167 25 C 0.136 3.864 26 N -0.324 5.324 27 C 0.410 3.590 28 N -0.423 5.423 29 O -0.449 6.449 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.223 0.777 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.237 0.763 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.177 0.823 42 H 0.251 0.749 43 H 0.232 0.768 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.073 9.585 -21.508 23.746 hybrid contribution 0.305 0.018 1.653 1.681 sum -2.768 9.603 -19.854 22.228 Atomic orbital electron populations 1.22548 0.99263 1.01405 0.99773 1.20338 0.92248 0.95404 0.86106 0.93182 1.42440 1.78223 1.10804 1.04752 1.19162 1.37213 0.93909 0.87177 0.91210 1.24743 1.01860 0.95973 0.98082 1.69646 1.50431 1.08627 1.29145 0.86263 0.77778 0.78595 0.83473 1.21245 1.21657 1.21265 1.21437 0.98956 0.93217 0.83436 0.89250 1.22138 1.01733 0.95520 1.02410 1.46347 1.25600 1.55663 1.08023 1.17891 0.84763 0.80071 0.82919 1.90846 1.22132 1.42047 1.85377 1.19558 1.05465 0.95493 1.00103 1.17259 0.95424 0.79217 0.94571 1.91562 1.91159 1.35172 1.92596 1.21054 1.04270 0.96868 0.97586 1.21014 0.95155 0.92454 0.98639 1.21468 0.99788 1.02592 0.92886 1.17046 0.91187 0.88173 0.90009 1.42511 1.38000 1.05569 1.46365 1.15821 0.82248 0.80895 0.80023 1.42966 1.32524 1.11095 1.55761 1.90952 1.36083 1.69982 1.47876 0.92674 0.92299 0.94938 0.77722 0.93321 0.92963 0.90344 0.92386 0.76311 0.84079 0.84212 0.82325 0.74875 0.76805 0.74592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.01 37.16 0.33 -2.51 16 2 C 0.17 3.16 2.93 -67.93 -0.20 2.96 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 N -0.72 -17.10 5.03 -53.42 -0.27 -17.37 16 5 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 8 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 9 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.13 2.24 2.62 -67.93 -0.18 2.06 16 14 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 15 C -0.16 -2.72 9.00 37.16 0.33 -2.38 16 16 N -0.70 -9.91 4.99 -54.90 -0.27 -10.19 16 17 C 0.56 8.28 5.77 -12.55 -0.07 8.20 16 18 O -0.53 -9.52 16.77 5.27 0.09 -9.43 16 19 C -0.20 -2.52 5.65 -104.76 -0.59 -3.11 16 20 C 0.16 1.86 7.29 -38.98 -0.28 1.57 16 21 F -0.13 -1.70 16.83 2.25 0.04 -1.66 16 22 C -0.18 -1.61 10.00 -39.55 -0.40 -2.00 16 23 C -0.05 -0.44 10.02 -39.56 -0.40 -0.84 16 24 C -0.15 -1.50 8.70 -39.44 -0.34 -1.84 16 25 C 0.23 2.67 6.44 -83.49 -0.54 2.13 16 26 N -0.68 -6.84 5.17 -14.05 -0.07 -6.92 16 27 C 0.71 7.15 8.63 -86.93 -0.75 6.40 16 28 N -0.86 -5.32 8.88 27.63 0.25 -5.07 16 29 O -0.57 -7.41 14.33 5.29 0.08 -7.33 16 30 H 0.05 0.94 6.56 -51.93 -0.34 0.60 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.44 6.29 -51.93 -0.33 0.11 16 33 H 0.39 9.79 5.77 -40.82 -0.24 9.55 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.47 6.29 -51.93 -0.33 1.14 16 37 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 38 H 0.40 5.05 6.56 -40.82 -0.27 4.78 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.16 1.69 5.78 -52.49 -0.30 1.38 16 42 H 0.41 3.94 7.91 -40.82 -0.32 3.62 16 43 H 0.40 1.70 8.85 -40.82 -0.36 1.34 16 44 H 0.42 2.03 8.93 -40.82 -0.36 1.67 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -33.66 371.11 -7.44 -41.10 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -5.24 Total: 17.53 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -3.32 Total: 3.63 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: 0.35 Total: -66.21 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.16 Total: -16.77 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.66 -7.44 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733998608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.403 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds