Wall clock time and date at job start Tue Mar 31 2020 20:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46806 * 2 1 4 4 N 1.46498 * 109.47188 * 120.00352 * 2 1 3 5 5 C 1.36941 * 119.99806 * 275.00119 * 4 2 1 6 6 H 1.07999 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99886 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99882 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99861 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47094 * 60.00201 * 9 7 5 11 11 H 1.48499 * 109.47476 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47279 * 300.00213 * 9 7 5 13 13 C 1.53002 * 109.47063 * 240.00108 * 2 1 3 14 14 H 1.08998 * 109.47122 * 174.99800 * 13 2 1 15 15 C 1.53002 * 109.47278 * 295.00092 * 13 2 1 16 16 N 1.46501 * 109.46959 * 55.00232 * 13 2 1 17 17 C 1.34776 * 119.99970 * 155.00334 * 16 13 2 18 18 O 1.21609 * 119.99853 * 359.97438 * 17 16 13 19 19 C 1.47359 * 120.00102 * 179.97438 * 17 16 13 20 20 C 1.39945 * 120.22527 * 269.99618 * 19 17 16 21 21 F 1.35104 * 120.07260 * 0.02562 * 20 19 17 22 22 C 1.38133 * 119.85503 * 179.97438 * 20 19 17 23 23 C 1.38438 * 120.29795 * 0.02562 * 22 20 19 24 24 C 1.38090 * 120.45197 * 359.95788 * 23 22 20 25 25 C 1.38774 * 120.14175 * 359.78651 * 24 23 22 26 26 N 1.39287 * 120.15095 * 180.25319 * 25 24 23 27 27 C 1.34774 * 120.00345 * 24.83934 * 26 25 24 28 28 N 1.34769 * 120.00262 * 185.62500 * 27 26 25 29 29 O 1.21581 * 119.99439 * 5.62869 * 27 26 25 30 30 H 1.08996 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46943 * 300.00092 * 1 2 3 32 32 H 1.09002 * 109.46641 * 59.99796 * 1 2 3 33 33 H 0.96994 * 120.00436 * 94.99646 * 4 2 1 34 34 H 0.97000 * 119.99541 * 179.97438 * 8 7 5 35 35 H 1.08990 * 109.47055 * 179.97438 * 15 13 2 36 36 H 1.08999 * 109.46957 * 300.00322 * 15 13 2 37 37 H 1.08997 * 109.46758 * 59.99786 * 15 13 2 38 38 H 0.97005 * 120.00586 * 334.99355 * 16 13 2 39 39 H 1.07996 * 119.85045 * 180.02562 * 22 20 19 40 40 H 1.08000 * 119.77649 * 179.97438 * 23 22 20 41 41 H 1.08001 * 119.92738 * 180.02562 * 24 23 22 42 42 H 0.97008 * 119.99878 * 204.84206 * 26 25 24 43 43 H 0.97007 * 120.00369 * 0.02562 * 28 27 26 44 44 H 0.97002 * 120.00389 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8927 1.0404 2.4241 7 6 2.6114 -0.6621 3.5092 8 7 2.9235 -1.9394 3.4503 9 14 2.7904 0.2699 5.1181 10 1 1.4683 0.8077 5.5284 11 1 3.2993 -0.6485 6.1683 12 1 3.7464 1.3917 4.9367 13 6 2.0401 -0.7212 -1.2493 14 1 3.1264 -0.6443 -1.2952 15 6 1.6353 -2.1955 -1.1881 16 7 1.4559 -0.1035 -2.4424 17 6 2.0913 -0.1937 -3.6276 18 8 3.1497 -0.7874 -3.7064 19 6 1.5035 0.4271 -4.8278 20 6 0.6292 -0.3020 -5.6417 21 9 0.3200 -1.5795 -5.3292 22 6 0.0821 0.2877 -6.7647 23 6 0.3953 1.5966 -7.0890 24 6 1.2563 2.3277 -6.2945 25 6 1.8123 1.7553 -5.1592 26 7 2.6766 2.4942 -4.3548 27 6 2.6047 3.8400 -4.3469 28 7 3.5126 4.5593 -3.6579 29 8 1.7207 4.4051 -4.9612 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 3.2468 -2.3966 4.2423 35 1 1.9982 -2.7091 -2.0782 36 1 2.0699 -2.6550 -0.3003 37 1 0.5490 -2.2723 -1.1421 38 1 0.6118 0.3702 -2.3795 39 1 -0.5929 -0.2749 -7.3925 40 1 -0.0369 2.0492 -7.9692 41 1 1.4944 3.3483 -6.5553 42 1 3.3304 2.0402 -3.8003 43 1 4.2181 4.1085 -3.1680 44 1 3.4606 5.5279 -3.6519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733998608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:16 Heat of formation + Delta-G solvation = -91.701795 kcal Electronic energy + Delta-G solvation = -29805.297851 eV Core-core repulsion = 25478.669934 eV Total energy + Delta-G solvation = -4326.627917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.06283 -42.09736 -40.95053 -39.37103 -38.35726 -35.96637 -35.64807 -34.73154 -33.69770 -32.25562 -30.75077 -30.36708 -29.84193 -26.22468 -25.76914 -24.57293 -24.35724 -22.13866 -21.88145 -20.77472 -19.79903 -19.51742 -19.43956 -18.84560 -17.79317 -17.48537 -17.20506 -16.70334 -16.61393 -16.46515 -16.23210 -16.14327 -15.90841 -15.63549 -15.53169 -15.20084 -15.04490 -14.60969 -14.24948 -13.96432 -13.73246 -13.51794 -13.17583 -13.14931 -13.02787 -12.85889 -12.78439 -12.67201 -12.19023 -12.06375 -11.76718 -11.69504 -11.65543 -11.38357 -11.16275 -10.95250 -10.78202 -10.25369 -9.96445 -9.25976 -9.04463 -7.93592 -5.22809 -0.15728 0.08101 1.26229 1.48638 1.50875 1.52318 1.56994 1.86498 1.96412 2.54213 2.58161 3.10052 3.30480 3.39998 3.45773 3.81978 3.86530 3.91809 3.95924 4.03482 4.21928 4.28621 4.30024 4.55531 4.64593 4.73561 4.80793 4.88626 4.90956 4.96551 5.04737 5.16060 5.19596 5.24471 5.34106 5.39217 5.52647 5.57740 5.60892 5.81525 5.87983 6.27886 6.32740 6.65631 6.98155 7.34963 7.35648 8.08199 8.31733 9.29657 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.003168 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.765197 B = 8835.851471 C =10275.142746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.052 0.948 4 N -0.732 5.732 5 C -0.240 4.240 6 H 0.078 0.922 7 C -0.073 4.073 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.277 1.277 13 C 0.148 3.852 14 H 0.069 0.931 15 C -0.152 4.152 16 N -0.692 5.692 17 C 0.566 3.434 18 O -0.565 6.565 19 C -0.216 4.216 20 C 0.137 3.863 21 F -0.140 7.140 22 C -0.166 4.166 23 C -0.037 4.037 24 C -0.152 4.152 25 C 0.226 3.774 26 N -0.677 5.677 27 C 0.708 3.292 28 N -0.837 5.837 29 O -0.602 6.602 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.411 0.589 39 H 0.170 0.830 40 H 0.178 0.822 41 H 0.157 0.843 42 H 0.415 0.585 43 H 0.414 0.586 44 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 11.450 -22.808 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.070 0.930 4 N -0.374 5.374 5 C -0.371 4.371 6 H 0.096 0.904 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.203 1.203 13 C 0.043 3.957 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.345 5.345 17 C 0.352 3.648 18 O -0.444 6.444 19 C -0.223 4.223 20 C 0.116 3.884 21 F -0.119 7.119 22 C -0.186 4.186 23 C -0.055 4.055 24 C -0.173 4.173 25 C 0.127 3.873 26 N -0.323 5.323 27 C 0.406 3.594 28 N -0.406 5.406 29 O -0.481 6.481 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.211 0.789 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.249 0.751 39 H 0.187 0.813 40 H 0.195 0.805 41 H 0.174 0.826 42 H 0.252 0.748 43 H 0.245 0.755 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.379 11.538 -23.178 26.258 hybrid contribution 0.692 -0.499 2.027 2.199 sum -3.687 11.038 -21.151 24.141 Atomic orbital electron populations 1.22385 0.97174 1.01540 1.00914 1.20479 0.93469 0.95020 0.84999 0.92983 1.42622 1.78572 1.10533 1.05713 1.19564 1.35216 0.94301 0.88058 0.90385 1.25524 1.02845 0.96823 1.01385 1.69809 1.52414 1.10206 1.29514 0.85247 0.77940 0.77306 0.79455 1.20440 1.22551 1.20349 1.21022 0.97844 0.93014 0.83793 0.91245 1.22037 1.02229 0.95490 1.01226 1.46126 1.25784 1.55387 1.07163 1.18201 0.84028 0.79174 0.83426 1.90824 1.23848 1.43735 1.85959 1.19374 1.07024 0.96237 0.99696 1.17590 0.96194 0.78860 0.95726 1.91526 1.91357 1.36147 1.92863 1.21380 1.03608 0.97152 0.96433 1.21444 0.93420 0.91779 0.98883 1.21604 1.00201 1.02672 0.92773 1.17197 0.91563 0.87850 0.90650 1.42501 1.37839 1.05653 1.46287 1.15966 0.82456 0.80805 0.80143 1.42848 1.31734 1.11452 1.54601 1.90927 1.37477 1.70412 1.49316 0.93056 0.93637 0.91284 0.78932 0.94064 0.93171 0.92423 0.91238 0.75116 0.81264 0.80466 0.82573 0.74783 0.75492 0.73594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 9.01 71.98 0.65 -4.48 16 2 C 0.17 6.22 2.93 45.00 0.13 6.35 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.73 -35.17 5.03 -322.93 -1.63 -36.79 16 5 C -0.24 -12.76 9.93 84.03 0.83 -11.93 16 6 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 8 N -0.97 -58.33 13.06 21.65 0.28 -58.04 16 9 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.15 4.98 2.62 44.99 0.12 5.09 16 14 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 15 C -0.15 -5.22 9.00 71.98 0.65 -4.57 16 16 N -0.69 -18.99 4.99 -445.86 -2.22 -21.22 16 17 C 0.57 16.63 5.77 86.64 0.50 17.13 16 18 O -0.56 -20.74 16.77 -4.06 -0.07 -20.81 16 19 C -0.22 -5.27 5.65 -19.95 -0.11 -5.38 16 20 C 0.14 3.05 7.29 22.66 0.17 3.21 16 21 F -0.14 -3.63 16.83 44.97 0.76 -2.88 16 22 C -0.17 -2.49 10.00 22.29 0.22 -2.26 16 23 C -0.04 -0.48 10.02 22.28 0.22 -0.25 16 24 C -0.15 -2.78 8.70 22.36 0.19 -2.59 16 25 C 0.23 4.88 6.44 38.59 0.25 5.13 16 26 N -0.68 -13.10 5.17 -316.64 -1.64 -14.74 16 27 C 0.71 13.41 8.63 179.06 1.55 14.96 16 28 N -0.84 -9.22 8.88 -184.76 -1.64 -10.86 16 29 O -0.60 -14.87 14.33 -3.97 -0.06 -14.92 16 30 H 0.05 1.68 6.56 -2.39 -0.02 1.67 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.69 6.29 -2.39 -0.02 1.67 16 33 H 0.38 19.58 5.77 -92.71 -0.54 19.05 16 34 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 2.24 6.29 -2.39 -0.02 2.22 16 37 H 0.07 2.20 6.56 -2.39 -0.02 2.18 16 38 H 0.41 9.64 6.56 -92.70 -0.61 9.03 16 39 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 41 H 0.16 3.03 5.78 -2.91 -0.02 3.02 16 42 H 0.42 7.73 7.91 -92.70 -0.73 7.00 16 43 H 0.41 2.89 8.85 -92.70 -0.82 2.07 16 44 H 0.43 3.46 8.93 -92.71 -0.83 2.63 16 Total: -1.00 -73.74 371.11 -0.75 -74.49 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -2.40 Total: 41.93 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.83 Total: 16.77 kcal Atomic # 7 Polarization: -134.81 SS G_CDS: -6.84 Total: -141.65 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.12 Total: -35.73 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.76 Total: -2.88 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.74 -0.75 -74.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733998608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.213 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds