Wall clock time and date at job start Tue Mar 31 2020 20:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47030 * 2 1 4 4 C 1.53002 * 109.46923 * 239.99956 * 2 1 3 5 5 N 1.46502 * 109.47095 * 294.77794 * 4 2 1 6 6 C 1.34779 * 119.99763 * 175.01990 * 5 4 2 7 7 O 1.21511 * 119.99793 * 359.97438 * 6 5 4 8 8 C 1.48155 * 119.99818 * 180.02562 * 6 5 4 9 9 C 1.39894 * 120.90788 * 359.71802 * 8 6 5 10 10 C 1.38039 * 119.06377 * 179.73665 * 9 8 6 11 11 N 1.31878 * 120.93725 * 0.55352 * 10 9 8 12 12 C 1.31963 * 122.01111 * 359.71441 * 11 10 9 13 13 F 1.35101 * 119.58800 * 180.02562 * 12 11 10 14 14 C 1.38527 * 120.82623 * 0.02562 * 12 11 10 15 15 N 1.46901 * 109.47111 * 120.00078 * 2 1 3 16 16 C 1.46899 * 111.00308 * 175.38613 * 15 2 1 17 17 C 1.46901 * 111.00037 * 299.34621 * 15 2 1 18 18 C 1.50700 * 109.47313 * 170.00019 * 17 15 2 19 19 O 1.21295 * 119.99999 * 359.97438 * 18 17 15 20 20 N 1.34769 * 120.00253 * 179.97438 * 18 17 15 21 21 C 1.37099 * 120.00217 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99673 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00141 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00161 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99947 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47226 * 89.99704 * 25 23 21 27 27 H 1.48491 * 109.47363 * 210.00169 * 25 23 21 28 28 H 1.48504 * 109.47254 * 330.00441 * 25 23 21 29 29 H 1.08999 * 109.47196 * 59.99996 * 1 2 3 30 30 H 1.09005 * 109.47451 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47109 * 299.99654 * 1 2 3 32 32 H 1.08994 * 109.46964 * 54.78308 * 4 2 1 33 33 H 1.09000 * 109.47110 * 174.78120 * 4 2 1 34 34 H 0.96995 * 120.00237 * 355.02598 * 5 4 2 35 35 H 1.08000 * 120.46789 * 359.97438 * 9 8 6 36 36 H 1.08005 * 119.53403 * 180.29812 * 10 9 8 37 37 H 1.07994 * 120.51394 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47555 * 177.40602 * 16 15 2 39 39 H 1.09001 * 109.47070 * 297.41113 * 16 15 2 40 40 H 1.09003 * 109.46835 * 57.40728 * 16 15 2 41 41 H 1.08997 * 109.47516 * 49.99316 * 17 15 2 42 42 H 1.09008 * 109.46572 * 289.99486 * 17 15 2 43 43 H 0.97003 * 120.00066 * 0.02562 * 20 18 17 44 44 H 0.96992 * 120.00044 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6569 -2.1340 -1.1880 6 6 1.9126 -2.9474 -2.2319 7 8 2.4603 -2.5087 -3.2239 8 6 1.5247 -4.3759 -2.1702 9 6 0.8976 -4.9019 -1.0357 10 6 0.5477 -6.2371 -1.0213 11 7 0.8064 -7.0170 -2.0529 12 6 1.4009 -6.5640 -3.1405 13 9 1.6419 -7.4063 -4.1689 14 6 1.7810 -5.2357 -3.2409 15 7 2.0197 -0.6925 1.1994 16 6 3.4839 -0.8084 1.1796 17 6 1.5615 -0.0174 2.4210 18 6 1.8691 -0.8805 3.6175 19 8 2.4159 -1.9528 3.4673 20 7 1.5368 -0.4610 4.8544 21 6 1.8162 -1.2464 5.9428 22 1 2.3031 -2.2011 5.8090 23 6 1.4731 -0.8141 7.2180 24 7 1.7414 -1.5667 8.2613 25 14 0.6317 0.8376 7.4494 26 1 -0.8407 0.6565 7.3842 27 1 1.0031 1.4013 8.7720 28 1 1.0639 1.7680 6.3757 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6023 -0.2642 -2.1367 33 1 3.1259 -0.6411 -1.2973 34 1 1.2193 -2.4840 -0.3963 35 1 0.6867 -4.2713 -0.1847 36 1 0.0588 -6.6500 -0.1513 37 1 2.2675 -4.8705 -4.1331 38 1 3.8234 -1.2836 2.0999 39 1 3.7890 -1.4123 0.3249 40 1 3.9259 0.1847 1.0991 41 1 0.4863 0.1513 2.3615 42 1 2.0743 0.9392 2.5216 43 1 1.0992 0.3964 4.9745 44 1 1.5015 -1.2650 9.1514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734027833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:55 Heat of formation + Delta-G solvation = -52.838971 kcal Electronic energy + Delta-G solvation = -28900.076857 eV Core-core repulsion = 24575.134159 eV Total energy + Delta-G solvation = -4324.942698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.32196 -40.90303 -39.63065 -38.87855 -37.46628 -34.66773 -33.96175 -33.20663 -31.75594 -31.48903 -30.98173 -28.81100 -26.78596 -25.02885 -24.84877 -23.95094 -23.56817 -21.23399 -20.15684 -19.40886 -18.91134 -18.30850 -17.68061 -16.91096 -16.60403 -16.41385 -16.33825 -15.77320 -15.65174 -15.25399 -15.09479 -14.69019 -14.58221 -14.29939 -14.16496 -13.89825 -13.66935 -13.50771 -13.31224 -13.16103 -12.72948 -12.55198 -12.48628 -12.31089 -11.93180 -11.80766 -11.53949 -11.42445 -11.09967 -10.83608 -10.65998 -10.62702 -10.41405 -10.04836 -10.01752 -9.61353 -9.43596 -9.28326 -8.69635 -8.26445 -8.14029 -6.38058 -3.89830 0.21896 0.51128 2.51514 2.72116 2.95860 3.00410 3.09621 3.21183 3.33452 3.63973 3.72142 4.03495 4.17706 4.19867 4.42781 4.48866 4.51166 4.64646 4.78757 5.01796 5.09004 5.14017 5.19861 5.27916 5.34780 5.39300 5.47768 5.51376 5.53648 5.58922 5.69727 5.73861 5.79380 5.84383 6.03432 6.11062 6.17333 6.38348 6.97933 7.11789 7.19707 7.25364 7.50610 7.87332 8.06920 8.52232 8.87859 9.34920 9.74761 10.74907 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.002517 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.613160 B =11120.246049 C =12416.146489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 H 0.058 0.942 4 C 0.128 3.872 5 N -0.700 5.700 6 C 0.557 3.443 7 O -0.534 6.534 8 C -0.058 4.058 9 C -0.147 4.147 10 C 0.139 3.861 11 N -0.500 5.500 12 C 0.303 3.697 13 F -0.109 7.109 14 C -0.140 4.140 15 N -0.515 5.515 16 C 0.017 3.983 17 C 0.038 3.962 18 C 0.452 3.548 19 O -0.560 6.560 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.415 0.585 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.370 0.630 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 1.848 -19.599 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 H 0.076 0.924 4 C 0.004 3.996 5 N -0.353 5.353 6 C 0.342 3.658 7 O -0.412 6.412 8 C -0.069 4.069 9 C -0.168 4.168 10 C -0.018 4.018 11 N -0.215 5.215 12 C 0.150 3.850 13 F -0.088 7.088 14 C -0.162 4.162 15 N -0.240 5.240 16 C -0.131 4.131 17 C -0.093 4.093 18 C 0.237 3.763 19 O -0.442 6.442 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.253 0.747 35 H 0.172 0.828 36 H 0.195 0.805 37 H 0.177 0.823 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.202 0.798 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.932 0.068 -20.168 20.548 hybrid contribution -0.235 2.666 0.674 2.760 sum -4.167 2.735 -19.495 20.122 Atomic orbital electron populations 1.21933 0.93709 1.02938 1.02128 1.21995 0.96432 0.96169 0.90058 0.92414 1.21476 1.00475 0.80250 0.97354 1.45782 1.60746 1.10024 1.18792 1.18004 0.79370 0.85030 0.83398 1.90787 1.42364 1.76195 1.31854 1.20233 0.98025 0.94410 0.94200 1.22543 0.98188 0.97603 0.98444 1.22610 0.94806 0.89448 0.94908 1.66918 1.13305 1.40860 1.00413 1.17990 0.96479 0.85601 0.84973 1.91648 1.91515 1.71256 1.54409 1.21905 1.01386 0.91676 1.01224 1.61634 1.12060 1.50417 0.99916 1.22609 0.86109 0.99451 1.04887 1.21989 1.01604 0.95557 0.90175 1.19595 0.84943 0.88374 0.83342 1.90528 1.45447 1.23287 1.84953 1.42219 1.54937 1.19424 1.06327 1.19410 1.37549 1.03392 0.83047 0.86244 1.25044 0.97790 0.98065 0.95223 1.69613 1.46352 1.37228 0.98762 0.86685 0.80430 0.83676 0.78649 1.19583 1.20181 1.19569 0.91960 0.91634 0.91762 0.90442 0.91045 0.74705 0.82776 0.80504 0.82277 0.88395 0.91764 0.96460 0.88787 0.93252 0.79758 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.88 37.16 0.33 -0.88 16 2 C 0.06 0.58 2.34 -67.71 -0.16 0.43 16 3 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.13 1.22 4.59 -4.04 -0.02 1.20 16 5 N -0.70 -6.97 5.01 -61.15 -0.31 -7.28 16 6 C 0.56 6.36 7.80 -12.19 -0.10 6.26 16 7 O -0.53 -7.63 16.44 5.36 0.09 -7.54 16 8 C -0.06 -0.59 5.91 -104.66 -0.62 -1.21 16 9 C -0.15 -1.27 9.61 -39.03 -0.38 -1.65 16 10 C 0.14 1.23 11.17 -17.60 -0.20 1.03 16 11 N -0.50 -5.63 10.35 -13.64 -0.14 -5.77 16 12 C 0.30 3.36 8.41 -17.39 -0.15 3.21 16 13 F -0.11 -1.23 17.29 2.25 0.04 -1.19 16 14 C -0.14 -1.44 9.66 -38.93 -0.38 -1.82 16 15 N -0.52 -6.54 3.73 -236.33 -0.88 -7.43 16 16 C 0.02 0.23 8.66 60.06 0.52 0.75 16 17 C 0.04 0.54 5.27 -4.98 -0.03 0.51 16 18 C 0.45 9.19 7.45 -10.99 -0.08 9.11 16 19 O -0.56 -13.42 13.93 5.54 0.08 -13.35 16 20 N -0.59 -13.01 5.09 -10.96 -0.06 -13.06 16 21 C -0.31 -8.17 10.16 -14.93 -0.15 -8.32 16 22 H 0.12 3.68 7.39 -52.49 -0.39 3.29 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -24.85 13.96 55.50 0.77 -24.08 16 25 Si 0.88 18.48 27.74 -169.99 -4.71 13.77 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.14 6.52 56.52 0.37 -4.77 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 7.31 -51.93 -0.38 0.17 16 31 H 0.06 0.53 6.21 -51.93 -0.32 0.20 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.73 6.71 -51.93 -0.35 0.38 16 34 H 0.41 3.97 5.56 -40.82 -0.23 3.74 16 35 H 0.15 1.10 6.53 -52.49 -0.34 0.76 16 36 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.16 1.53 7.74 -52.49 -0.41 1.13 16 38 H 0.10 1.71 5.80 -51.93 -0.30 1.41 16 39 H 0.06 0.81 6.48 -51.93 -0.34 0.48 16 40 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 1.14 5.85 -51.93 -0.30 0.84 16 42 H 0.05 0.64 8.12 -51.92 -0.42 0.22 16 43 H 0.37 7.16 5.76 -40.82 -0.24 6.92 16 44 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -32.68 368.06 -6.36 -39.04 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.29 Total: 11.70 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.49 Total: 9.64 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.61 Total: -57.61 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.17 Total: -20.88 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.71 Total: 13.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.68 -6.36 -39.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734027833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.802 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds