Wall clock time and date at job start Tue Mar 31 2020 20:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47030 * 2 1 4 4 C 1.53002 * 109.46923 * 239.99956 * 2 1 3 5 5 N 1.46502 * 109.47095 * 294.77794 * 4 2 1 6 6 C 1.34779 * 119.99763 * 175.01990 * 5 4 2 7 7 O 1.21511 * 119.99793 * 359.97438 * 6 5 4 8 8 C 1.48155 * 119.99818 * 180.02562 * 6 5 4 9 9 C 1.39894 * 120.90788 * 359.71802 * 8 6 5 10 10 C 1.38039 * 119.06377 * 179.73665 * 9 8 6 11 11 N 1.31878 * 120.93725 * 0.55352 * 10 9 8 12 12 C 1.31963 * 122.01111 * 359.71441 * 11 10 9 13 13 F 1.35101 * 119.58800 * 180.02562 * 12 11 10 14 14 C 1.38527 * 120.82623 * 0.02562 * 12 11 10 15 15 N 1.46901 * 109.47111 * 120.00078 * 2 1 3 16 16 C 1.46899 * 111.00308 * 175.38613 * 15 2 1 17 17 C 1.46901 * 111.00037 * 299.34621 * 15 2 1 18 18 C 1.50700 * 109.47313 * 170.00019 * 17 15 2 19 19 O 1.21295 * 119.99999 * 359.97438 * 18 17 15 20 20 N 1.34769 * 120.00253 * 179.97438 * 18 17 15 21 21 C 1.37099 * 120.00217 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99673 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00141 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00161 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99947 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47226 * 89.99704 * 25 23 21 27 27 H 1.48491 * 109.47363 * 210.00169 * 25 23 21 28 28 H 1.48504 * 109.47254 * 330.00441 * 25 23 21 29 29 H 1.08999 * 109.47196 * 59.99996 * 1 2 3 30 30 H 1.09005 * 109.47451 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47109 * 299.99654 * 1 2 3 32 32 H 1.08994 * 109.46964 * 54.78308 * 4 2 1 33 33 H 1.09000 * 109.47110 * 174.78120 * 4 2 1 34 34 H 0.96995 * 120.00237 * 355.02598 * 5 4 2 35 35 H 1.08000 * 120.46789 * 359.97438 * 9 8 6 36 36 H 1.08005 * 119.53403 * 180.29812 * 10 9 8 37 37 H 1.07994 * 120.51394 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47555 * 177.40602 * 16 15 2 39 39 H 1.09001 * 109.47070 * 297.41113 * 16 15 2 40 40 H 1.09003 * 109.46835 * 57.40728 * 16 15 2 41 41 H 1.08997 * 109.47516 * 49.99316 * 17 15 2 42 42 H 1.09008 * 109.46572 * 289.99486 * 17 15 2 43 43 H 0.97003 * 120.00066 * 0.02562 * 20 18 17 44 44 H 0.96992 * 120.00044 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6569 -2.1340 -1.1880 6 6 1.9126 -2.9474 -2.2319 7 8 2.4603 -2.5087 -3.2239 8 6 1.5247 -4.3759 -2.1702 9 6 0.8976 -4.9019 -1.0357 10 6 0.5477 -6.2371 -1.0213 11 7 0.8064 -7.0170 -2.0529 12 6 1.4009 -6.5640 -3.1405 13 9 1.6419 -7.4063 -4.1689 14 6 1.7810 -5.2357 -3.2409 15 7 2.0197 -0.6925 1.1994 16 6 3.4839 -0.8084 1.1796 17 6 1.5615 -0.0174 2.4210 18 6 1.8691 -0.8805 3.6175 19 8 2.4159 -1.9528 3.4673 20 7 1.5368 -0.4610 4.8544 21 6 1.8162 -1.2464 5.9428 22 1 2.3031 -2.2011 5.8090 23 6 1.4731 -0.8141 7.2180 24 7 1.7414 -1.5667 8.2613 25 14 0.6317 0.8376 7.4494 26 1 -0.8407 0.6565 7.3842 27 1 1.0031 1.4013 8.7720 28 1 1.0639 1.7680 6.3757 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6023 -0.2642 -2.1367 33 1 3.1259 -0.6411 -1.2973 34 1 1.2193 -2.4840 -0.3963 35 1 0.6867 -4.2713 -0.1847 36 1 0.0588 -6.6500 -0.1513 37 1 2.2675 -4.8705 -4.1331 38 1 3.8234 -1.2836 2.0999 39 1 3.7890 -1.4123 0.3249 40 1 3.9259 0.1847 1.0991 41 1 0.4863 0.1513 2.3615 42 1 2.0743 0.9392 2.5216 43 1 1.0992 0.3964 4.9745 44 1 1.5015 -1.2650 9.1514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734027833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:54 Heat of formation + Delta-G solvation = -78.539939 kcal Electronic energy + Delta-G solvation = -28901.191335 eV Core-core repulsion = 24575.134159 eV Total energy + Delta-G solvation = -4326.057176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.17381 -41.73556 -40.69324 -40.09795 -38.66840 -36.02740 -35.40603 -34.05019 -33.69218 -32.30751 -31.77334 -29.95888 -27.83392 -26.46403 -25.66257 -24.89921 -24.68233 -22.08135 -21.32753 -20.89915 -20.07333 -19.70250 -18.51016 -17.96841 -17.52316 -17.29384 -17.26112 -16.90894 -16.74660 -16.58899 -16.25367 -15.85163 -15.49703 -15.42190 -15.15985 -14.98416 -14.78767 -14.60792 -14.45299 -14.25357 -14.17452 -13.82131 -13.39815 -13.23889 -13.13550 -12.92512 -12.71174 -12.37418 -12.32153 -12.26112 -11.95032 -11.69137 -11.53518 -11.41139 -11.25189 -10.84758 -10.28971 -10.20978 -10.17626 -10.11802 -9.23032 -8.36719 -5.96573 -0.59179 -0.25742 1.32771 1.38402 1.46890 1.65593 1.89892 2.03672 2.26377 2.42517 2.53459 2.62405 3.19506 3.26810 3.41524 3.44952 3.67834 3.72479 3.76005 4.01920 4.13718 4.28920 4.38546 4.43303 4.44882 4.46959 4.59080 4.64288 4.65324 4.72039 4.78825 4.80354 4.98346 5.06364 5.22459 5.31238 5.39765 5.41441 5.57824 5.92057 6.04044 6.18655 6.39829 6.43933 6.65080 6.95070 7.01866 7.47046 8.04551 8.80880 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.002517 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.613160 B =11120.246049 C =12416.146489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.077 0.923 4 C 0.127 3.873 5 N -0.692 5.692 6 C 0.558 3.442 7 O -0.567 6.567 8 C -0.066 4.066 9 C -0.135 4.135 10 C 0.139 3.861 11 N -0.520 5.520 12 C 0.290 3.710 13 F -0.115 7.115 14 C -0.141 4.141 15 N -0.527 5.527 16 C 0.025 3.975 17 C 0.050 3.950 18 C 0.454 3.546 19 O -0.601 6.601 20 N -0.595 5.595 21 C -0.321 4.321 22 H 0.057 0.943 23 C -0.017 4.017 24 N -0.938 5.938 25 Si 0.962 3.038 26 H -0.257 1.257 27 H -0.281 1.281 28 H -0.230 1.230 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.417 0.583 35 H 0.172 0.828 36 H 0.206 0.794 37 H 0.161 0.839 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.388 0.612 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 5.112 -20.587 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.038 4.038 3 H 0.095 0.905 4 C 0.004 3.996 5 N -0.344 5.344 6 C 0.344 3.656 7 O -0.447 6.447 8 C -0.077 4.077 9 C -0.156 4.156 10 C -0.017 4.017 11 N -0.235 5.235 12 C 0.137 3.863 13 F -0.095 7.095 14 C -0.163 4.163 15 N -0.252 5.252 16 C -0.123 4.123 17 C -0.081 4.081 18 C 0.242 3.758 19 O -0.485 6.485 20 N -0.237 5.237 21 C -0.450 4.450 22 H 0.075 0.925 23 C -0.216 4.216 24 N -0.579 5.579 25 Si 0.782 3.218 26 H -0.181 1.181 27 H -0.206 1.206 28 H -0.154 1.154 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.256 0.744 35 H 0.189 0.811 36 H 0.223 0.777 37 H 0.179 0.821 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.145 0.855 42 H 0.093 0.907 43 H 0.223 0.777 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.895 3.346 -21.189 22.247 hybrid contribution 0.442 1.531 0.923 1.841 sum -5.454 4.876 -20.267 21.547 Atomic orbital electron populations 1.21959 0.92294 1.03088 1.03331 1.22050 0.97371 0.96544 0.87861 0.90476 1.21559 1.00174 0.79873 0.98033 1.45776 1.59989 1.10284 1.18344 1.18120 0.78872 0.85424 0.83169 1.90771 1.44026 1.76812 1.33085 1.20235 0.98740 0.93947 0.94807 1.22726 0.96889 0.97734 0.98214 1.23121 0.94172 0.89410 0.95000 1.66947 1.13827 1.41780 1.00972 1.18079 0.97285 0.85816 0.85127 1.91625 1.91671 1.71443 1.54719 1.21910 1.01387 0.91457 1.01518 1.61560 1.11336 1.51622 1.00690 1.22413 0.87114 1.00018 1.02761 1.21916 1.03921 0.94674 0.87549 1.20873 0.82296 0.88234 0.84413 1.90526 1.46477 1.25621 1.85836 1.42062 1.56122 1.19837 1.05721 1.18971 1.38279 1.02354 0.85420 0.92493 1.26082 0.98228 1.03193 0.94054 1.69803 1.48308 1.40183 0.99569 0.85403 0.79341 0.77645 0.79364 1.18113 1.20639 1.15370 0.90125 0.92068 0.91204 0.89298 0.91830 0.74360 0.81057 0.77720 0.82112 0.92730 0.91226 0.94809 0.85501 0.90689 0.77671 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.88 71.98 0.64 -1.10 16 2 C 0.07 1.02 2.34 44.92 0.11 1.13 16 3 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 4 C 0.13 2.06 4.59 86.38 0.40 2.46 16 5 N -0.69 -12.42 5.01 -465.67 -2.33 -14.76 16 6 C 0.56 12.17 7.80 86.88 0.68 12.85 16 7 O -0.57 -15.84 16.44 -3.75 -0.06 -15.90 16 8 C -0.07 -1.30 5.91 -19.89 -0.12 -1.42 16 9 C -0.14 -2.15 9.61 22.62 0.22 -1.93 16 10 C 0.14 2.28 11.17 84.64 0.95 3.23 16 11 N -0.52 -11.44 10.35 -197.08 -2.04 -13.48 16 12 C 0.29 6.45 8.41 84.74 0.71 7.17 16 13 F -0.12 -2.66 17.29 44.97 0.78 -1.89 16 14 C -0.14 -2.91 9.66 22.69 0.22 -2.69 16 15 N -0.53 -11.85 3.73 -901.62 -3.36 -15.22 16 16 C 0.02 0.64 8.66 127.69 1.11 1.75 16 17 C 0.05 1.24 5.27 85.56 0.45 1.69 16 18 C 0.45 18.01 7.45 87.66 0.65 18.67 16 19 O -0.60 -29.48 13.93 -3.08 -0.04 -29.52 16 20 N -0.60 -25.64 5.09 -306.99 -1.56 -27.20 16 21 C -0.32 -17.73 10.16 84.04 0.85 -16.88 16 22 H 0.06 3.78 7.39 -2.91 -0.02 3.76 16 23 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 24 N -0.94 -54.96 13.96 21.66 0.30 -54.66 16 25 Si 0.96 36.85 27.74 68.60 1.90 38.75 16 26 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.79 7.31 -2.38 -0.02 0.77 16 31 H 0.07 0.76 6.21 -2.39 -0.01 0.75 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.16 6.71 -2.39 -0.02 1.15 16 34 H 0.42 7.07 5.56 -92.71 -0.52 6.55 16 35 H 0.17 2.09 6.53 -2.91 -0.02 2.07 16 36 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.16 3.17 7.74 -2.91 -0.02 3.15 16 38 H 0.05 1.91 5.80 -2.39 -0.01 1.90 16 39 H 0.07 1.69 6.48 -2.39 -0.02 1.67 16 40 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.13 2.40 5.85 -2.39 -0.01 2.39 16 42 H 0.08 1.56 8.12 -2.38 -0.02 1.54 16 43 H 0.39 13.71 5.76 -92.71 -0.53 13.18 16 44 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -77.06 368.06 0.87 -76.18 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.03 Total: 33.23 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 7.33 Total: 24.46 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -9.00 Total: -125.32 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.10 Total: -45.42 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 1.90 Total: 38.75 kcal Total: -77.06 0.87 -76.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734027833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.356 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds