Wall clock time and date at job start Tue Mar 31 2020 20:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47373 * 2 1 4 4 C 1.52996 * 109.47057 * 119.99707 * 2 1 3 5 5 N 1.46504 * 109.47433 * 178.12621 * 4 2 1 6 6 C 1.46503 * 120.00005 * 264.08809 * 5 4 2 7 7 C 1.34779 * 119.99827 * 84.08304 * 5 4 2 8 8 O 1.21531 * 120.00013 * 355.02987 * 7 5 4 9 9 C 1.47994 * 119.99612 * 175.03592 * 7 5 4 10 10 C 1.39897 * 120.94357 * 311.39411 * 9 7 5 11 11 C 1.38039 * 119.04076 * 179.97438 * 10 9 7 12 12 N 1.31868 * 120.97767 * 359.97438 * 11 10 9 13 13 C 1.31715 * 122.09595 * 0.02562 * 12 11 10 14 14 C 1.38542 * 120.84755 * 359.73092 * 13 12 11 15 15 F 1.35102 * 120.54053 * 180.28872 * 14 13 12 16 16 N 1.46898 * 109.47436 * 239.99884 * 2 1 3 17 17 C 1.46905 * 110.99957 * 85.88598 * 16 2 1 18 18 C 1.50700 * 109.46898 * 180.02562 * 17 16 2 19 19 O 1.21289 * 120.00257 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99927 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00258 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00062 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00149 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99893 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00099 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46936 * 89.99719 * 25 23 21 27 27 H 1.48496 * 109.47476 * 209.99646 * 25 23 21 28 28 H 1.48498 * 109.46940 * 330.00364 * 25 23 21 29 29 H 1.09005 * 109.47016 * 60.00211 * 1 2 3 30 30 H 1.08997 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47520 * 300.00395 * 1 2 3 32 32 H 1.09005 * 109.47474 * 298.12769 * 4 2 1 33 33 H 1.09004 * 109.47390 * 58.12808 * 4 2 1 34 34 H 1.08998 * 109.47309 * 5.41119 * 6 5 4 35 35 H 1.09000 * 109.46908 * 125.41597 * 6 5 4 36 36 H 1.08995 * 109.46645 * 245.41226 * 6 5 4 37 37 H 1.08005 * 120.48037 * 359.96658 * 10 9 7 38 38 H 1.07991 * 119.51230 * 179.97438 * 11 10 9 39 39 H 1.07995 * 119.57696 * 180.02562 * 13 12 11 40 40 H 1.00900 * 111.00360 * 209.84441 * 16 2 1 41 41 H 1.08998 * 109.47012 * 299.99992 * 17 16 2 42 42 H 1.08995 * 109.47120 * 60.00152 * 17 16 2 43 43 H 0.97003 * 120.00186 * 0.02562 * 20 18 17 44 44 H 0.97001 * 119.99984 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5043 -0.7605 1.2270 6 6 4.1975 -1.9434 0.7110 7 6 4.2136 0.2918 1.6810 8 8 3.6415 1.3076 2.0245 9 6 5.6891 0.2102 1.7613 10 6 6.3175 -0.8893 2.3556 11 6 7.6964 -0.9251 2.4087 12 7 8.4206 0.0571 1.9091 13 6 7.8728 1.1114 1.3406 14 6 6.4961 1.2287 1.2389 15 9 5.9409 2.3101 0.6494 16 7 2.0197 -0.6925 -1.1994 17 6 2.1024 0.2276 -2.3416 18 6 2.6068 -0.5170 -3.5508 19 8 2.8709 -1.6980 -3.4693 20 7 2.7635 0.1292 -4.7232 21 6 3.2228 -0.5480 -5.8231 22 1 3.4587 -1.5995 -5.7504 23 6 3.3848 0.1183 -7.0317 24 7 3.8246 -0.5310 -8.0861 25 14 2.9775 1.9370 -7.1574 26 1 4.1864 2.7382 -6.8381 27 1 2.5271 2.2492 -8.5376 28 1 1.8953 2.2694 -6.1964 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7043 -0.1883 2.1390 33 1 1.6494 -1.7387 1.2663 34 1 3.4679 -2.6435 0.3041 35 1 4.8914 -1.6441 -0.0746 36 1 4.7492 -2.4227 1.5197 37 1 5.7322 -1.6985 2.7670 38 1 8.1894 -1.7701 2.8661 39 1 8.5050 1.8923 0.9444 40 1 2.9106 -1.1327 -1.0244 41 1 1.1136 0.6349 -2.5524 42 1 2.7874 1.0414 -2.1038 43 1 2.5520 1.0736 -4.7885 44 1 3.9374 -0.0659 -8.9299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734318402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:28 Heat of formation + Delta-G solvation = -85.093336 kcal Electronic energy + Delta-G solvation = -29661.251926 eV Core-core repulsion = 25334.910573 eV Total energy + Delta-G solvation = -4326.341353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.22031 -41.84212 -40.63155 -40.24472 -38.22423 -36.27924 -35.89890 -33.93603 -33.75768 -32.25768 -32.04811 -28.50917 -28.33693 -27.67508 -25.81912 -25.07975 -24.56258 -22.06459 -21.37422 -20.99102 -20.32914 -18.91841 -18.63325 -18.57540 -18.02492 -17.43693 -17.28094 -16.93401 -16.86717 -16.56036 -16.24218 -15.95835 -15.53387 -15.50052 -15.05340 -15.00649 -14.69406 -14.58174 -14.47814 -14.27726 -14.06202 -13.79172 -13.60458 -13.46586 -13.18897 -12.99488 -12.86733 -12.76793 -12.60405 -12.45520 -12.01790 -12.01021 -11.63159 -11.56165 -11.10024 -10.71684 -10.49390 -10.29058 -10.16364 -9.90999 -9.48005 -8.45082 -6.05544 -0.53240 -0.24066 1.26941 1.27557 1.30728 1.39787 1.70466 1.87617 2.18471 2.46823 2.62689 2.77609 3.01237 3.10878 3.31267 3.36535 3.51988 3.65219 3.82335 4.01014 4.05869 4.15883 4.21200 4.25371 4.34442 4.37698 4.44414 4.48475 4.57126 4.62725 4.69842 4.74255 4.84417 4.91208 5.01263 5.22699 5.39321 5.43203 5.48355 5.82575 5.93196 6.03123 6.31187 6.54505 6.62824 6.74156 6.82633 7.33984 7.87987 8.72125 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.003377 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.631716 B = 8289.238394 C = 9553.972380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 H 0.031 0.969 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.060 3.940 7 C 0.557 3.443 8 O -0.556 6.556 9 C -0.133 4.133 10 C -0.101 4.101 11 C 0.097 3.903 12 N -0.460 5.460 13 C 0.077 3.923 14 C 0.062 3.938 15 F -0.135 7.135 16 N -0.669 5.669 17 C 0.060 3.940 18 C 0.451 3.549 19 O -0.606 6.606 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.061 0.939 23 C -0.009 4.009 24 N -0.929 5.929 25 Si 0.958 3.042 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.236 1.236 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.188 0.812 38 H 0.211 0.789 39 H 0.189 0.811 40 H 0.343 0.657 41 H 0.111 0.889 42 H 0.054 0.946 43 H 0.387 0.613 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 1.806 25.918 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 H 0.049 0.951 4 C -0.005 4.005 5 N -0.334 5.334 6 C -0.082 4.082 7 C 0.344 3.656 8 O -0.434 6.434 9 C -0.144 4.144 10 C -0.120 4.120 11 C -0.059 4.059 12 N -0.168 5.168 13 C -0.081 4.081 14 C 0.040 3.960 15 F -0.114 7.114 16 N -0.304 5.304 17 C -0.073 4.073 18 C 0.239 3.761 19 O -0.490 6.490 20 N -0.232 5.232 21 C -0.457 4.457 22 H 0.079 0.921 23 C -0.209 4.209 24 N -0.570 5.570 25 Si 0.778 3.222 26 H -0.184 1.184 27 H -0.196 1.196 28 H -0.160 1.160 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.205 0.795 38 H 0.228 0.772 39 H 0.206 0.794 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.286 1.253 25.788 25.920 hybrid contribution -0.290 1.845 -1.012 2.124 sum 1.996 3.098 24.777 25.049 Atomic orbital electron populations 1.21702 0.92113 1.03095 1.02129 1.22046 0.97639 0.95739 0.89221 0.95088 1.21946 0.77402 1.03722 0.97469 1.47897 1.07440 1.16958 1.61055 1.22362 0.98931 0.86685 1.00215 1.18312 0.86689 0.83120 0.77459 1.90805 1.71885 1.30709 1.50008 1.20585 0.93735 0.96928 1.03195 1.22739 0.96743 0.96159 0.96384 1.23561 0.90369 0.97240 0.94778 1.67699 1.40846 1.00876 1.07419 1.23204 0.89535 0.97973 0.97398 1.19226 0.93639 0.84982 0.98184 1.91539 1.86084 1.52487 1.81287 1.60340 1.35184 1.31216 1.03638 1.21650 1.02365 0.93742 0.89559 1.20727 0.82480 0.87976 0.84934 1.90514 1.55534 1.17706 1.85230 1.42061 1.60540 1.11409 1.09201 1.19022 1.42406 0.95895 0.88410 0.92116 1.26014 0.96327 1.04594 0.93934 1.69782 1.45946 1.39334 1.01928 0.85457 0.80107 0.77065 0.79530 1.18391 1.19585 1.15983 0.93027 0.91182 0.90584 0.88723 0.86396 0.88389 0.93112 0.87702 0.79538 0.77200 0.79381 0.83582 0.87103 0.92799 0.77761 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.43 71.98 0.68 -1.91 16 2 C 0.06 1.52 2.88 44.91 0.13 1.64 16 3 H 0.03 0.87 7.66 -2.39 -0.02 0.85 16 4 C 0.12 2.15 4.94 86.38 0.43 2.58 16 5 N -0.60 -11.73 2.54 -850.01 -2.16 -13.89 16 6 C 0.06 0.90 7.57 127.77 0.97 1.87 16 7 C 0.56 13.66 7.01 86.83 0.61 14.27 16 8 O -0.56 -17.74 16.35 -3.81 -0.06 -17.80 16 9 C -0.13 -2.75 5.07 -19.85 -0.10 -2.85 16 10 C -0.10 -1.19 8.31 22.62 0.19 -1.00 16 11 C 0.10 1.08 11.17 84.64 0.95 2.02 16 12 N -0.46 -7.90 10.33 -195.82 -2.02 -9.92 16 13 C 0.08 1.46 11.17 84.78 0.95 2.41 16 14 C 0.06 1.46 7.31 22.78 0.17 1.63 16 15 F -0.14 -3.94 16.66 44.97 0.75 -3.19 16 16 N -0.67 -20.18 5.94 -495.60 -2.94 -23.12 16 17 C 0.06 2.02 5.96 85.56 0.51 2.53 16 18 C 0.45 20.90 7.82 87.66 0.69 21.59 16 19 O -0.61 -33.05 15.78 -3.06 -0.05 -33.10 16 20 N -0.59 -28.69 5.09 -306.99 -1.56 -30.26 16 21 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 22 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 23 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 24 N -0.93 -55.99 13.96 21.66 0.30 -55.69 16 25 Si 0.96 39.75 27.74 68.60 1.90 41.65 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.24 -8.48 6.52 99.48 0.65 -7.84 16 29 H 0.05 1.09 7.51 -2.38 -0.02 1.07 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.69 7.68 -2.38 -0.02 1.67 16 33 H 0.12 1.64 7.85 -2.38 -0.02 1.63 16 34 H 0.10 1.48 7.39 -2.39 -0.02 1.46 16 35 H 0.05 0.98 7.98 -2.39 -0.02 0.96 16 36 H 0.10 0.76 5.62 -2.39 -0.01 0.75 16 37 H 0.19 0.84 6.37 -2.91 -0.02 0.82 16 38 H 0.21 0.58 8.06 -2.92 -0.02 0.55 16 39 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.34 10.66 5.25 -89.69 -0.47 10.19 16 41 H 0.11 3.30 7.50 -2.39 -0.02 3.28 16 42 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 43 H 0.39 16.03 5.76 -92.71 -0.53 15.50 16 44 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -84.01 372.11 1.63 -82.37 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.00 Total: 36.72 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 7.47 Total: 26.21 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -8.38 Total: -132.87 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.11 Total: -50.90 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.75 Total: -3.19 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.90 Total: 41.65 kcal Total: -84.01 1.63 -82.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734318402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.719 kcal (2) G-P(sol) polarization free energy of solvation -84.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds