Wall clock time and date at job start Tue Mar 31 2020 20:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47505 * 2 1 4 4 C 1.52999 * 109.47098 * 239.99796 * 2 1 3 5 5 N 1.46497 * 109.47225 * 184.99945 * 4 2 1 6 6 C 1.46498 * 119.99995 * 270.00317 * 5 4 2 7 7 C 1.34781 * 119.99936 * 90.00421 * 5 4 2 8 8 O 1.21532 * 119.99938 * 4.42794 * 7 5 4 9 9 C 1.47996 * 120.00092 * 184.42730 * 7 5 4 10 10 C 1.39909 * 120.94073 * 311.73109 * 9 7 5 11 11 C 1.38040 * 119.03465 * 180.31417 * 10 9 7 12 12 N 1.31861 * 120.98053 * 359.68656 * 11 10 9 13 13 C 1.31721 * 122.09431 * 0.02562 * 12 11 10 14 14 C 1.38536 * 120.84849 * 0.02839 * 13 12 11 15 15 F 1.35103 * 120.53928 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.47368 * 120.00432 * 2 1 3 17 17 C 1.46906 * 110.99538 * 275.00193 * 16 2 1 18 18 C 1.50702 * 109.46895 * 179.97438 * 17 16 2 19 19 O 1.21295 * 120.00251 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99725 * 179.97438 * 18 17 16 21 21 C 1.37106 * 119.99699 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99835 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99748 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00239 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99637 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47487 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46930 * 120.00142 * 25 23 21 28 28 H 1.48502 * 109.47127 * 239.99694 * 25 23 21 29 29 H 1.08997 * 109.46858 * 59.99965 * 1 2 3 30 30 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46836 * 299.99749 * 1 2 3 32 32 H 1.09006 * 109.47159 * 65.00170 * 4 2 1 33 33 H 1.08998 * 109.47279 * 305.00291 * 4 2 1 34 34 H 1.09003 * 109.47399 * 272.84769 * 6 5 4 35 35 H 1.09000 * 109.47387 * 32.84989 * 6 5 4 36 36 H 1.09002 * 109.47396 * 152.84998 * 6 5 4 37 37 H 1.08002 * 120.48457 * 0.02562 * 10 9 7 38 38 H 1.07992 * 119.51099 * 179.70175 * 11 10 9 39 39 H 1.07996 * 119.57688 * 179.97438 * 13 12 11 40 40 H 1.00892 * 111.00290 * 151.04572 * 16 2 1 41 41 H 1.08997 * 109.46862 * 299.99101 * 17 16 2 42 42 H 1.09001 * 109.47300 * 59.99877 * 17 16 2 43 43 H 0.97000 * 120.00353 * 0.02562 * 20 18 17 44 44 H 0.96995 * 120.00089 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2340 -1.7613 7 6 4.0757 -1.8988 -0.6116 8 8 3.3866 -2.8159 -0.2104 9 6 5.5471 -1.9595 -0.4645 10 6 6.3904 -1.6718 -1.5432 11 6 7.7570 -1.7469 -1.3638 12 7 8.2711 -2.0779 -0.1955 13 6 7.5165 -2.3514 0.8489 14 6 6.1349 -2.3020 0.7596 15 9 5.3669 -2.5842 1.8347 16 7 2.0198 -0.6926 1.1994 17 6 2.0825 0.2225 2.3469 18 6 2.5874 -0.5219 3.5560 19 8 2.8679 -1.6989 3.4702 20 7 2.7283 0.1204 4.7325 21 6 3.1882 -0.5568 5.8324 22 1 3.4379 -1.6047 5.7559 23 6 3.3329 0.1052 7.0454 24 7 3.0295 1.3805 7.1383 25 14 3.9588 -0.8176 8.5441 26 1 4.2276 -2.2315 8.1783 27 1 5.2124 -0.1847 9.0271 28 1 2.9344 -0.7698 9.6182 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2951 34 1 4.5005 0.0355 -2.8201 35 1 3.8309 1.1939 -1.6462 36 1 5.2923 0.2617 -1.2421 37 1 5.9781 -1.3995 -2.5035 38 1 8.4150 -1.5312 -2.1925 39 1 7.9808 -2.6185 1.7867 40 1 2.9173 -1.1205 1.0287 41 1 2.7589 1.0461 2.1182 42 1 1.0871 0.6162 2.5525 43 1 2.5043 1.0617 4.8011 44 1 3.1302 1.8425 7.9852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734318404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:31 Heat of formation + Delta-G solvation = -86.810018 kcal Electronic energy + Delta-G solvation = -30391.242807 eV Core-core repulsion = 26064.827013 eV Total energy + Delta-G solvation = -4326.415793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.10073 -41.89742 -40.61643 -40.05578 -37.96435 -36.34456 -35.86159 -33.90026 -33.29203 -32.10722 -32.01158 -28.52853 -28.04846 -27.65326 -25.88453 -25.18909 -24.52143 -21.88994 -21.19931 -20.86393 -19.95154 -18.90233 -18.53905 -18.48291 -18.09323 -17.46176 -17.20759 -16.84841 -16.53063 -16.49643 -16.22031 -15.99787 -15.57839 -15.42907 -15.10492 -14.83649 -14.59044 -14.51674 -14.25876 -14.21970 -13.78008 -13.52611 -13.45311 -13.32363 -13.11375 -13.04320 -12.91323 -12.63946 -12.52117 -12.41893 -12.14687 -12.01202 -11.57510 -11.53342 -11.02259 -10.66959 -10.35262 -10.14160 -10.02803 -9.82512 -9.33103 -8.49089 -5.97407 -0.50722 -0.23645 1.33097 1.34809 1.37679 1.52744 1.76753 2.02217 2.26986 2.46889 2.85533 2.90132 3.11459 3.17089 3.37079 3.45430 3.55594 3.67968 3.85110 4.09409 4.16494 4.19926 4.25809 4.36127 4.38726 4.41811 4.50905 4.53179 4.61002 4.66157 4.72301 4.83373 4.85503 4.92471 5.04337 5.28689 5.38418 5.41566 5.48058 5.88885 6.04917 6.13704 6.38943 6.58736 6.62677 6.87159 7.11090 7.52814 8.10668 8.68901 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.004083 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.152525 B = 6855.691277 C = 8854.247515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 H 0.062 0.938 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.058 3.942 7 C 0.544 3.456 8 O -0.546 6.546 9 C -0.136 4.136 10 C -0.093 4.093 11 C 0.095 3.905 12 N -0.455 5.455 13 C 0.070 3.930 14 C 0.055 3.945 15 F -0.135 7.135 16 N -0.685 5.685 17 C 0.065 3.935 18 C 0.431 3.569 19 O -0.611 6.611 20 N -0.573 5.573 21 C -0.331 4.331 22 H 0.073 0.927 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.278 1.278 27 H -0.267 1.267 28 H -0.268 1.268 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.194 0.806 38 H 0.219 0.781 39 H 0.178 0.822 40 H 0.339 0.661 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.395 0.605 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 4.666 -25.698 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.050 4.050 3 H 0.080 0.920 4 C -0.009 4.009 5 N -0.340 5.340 6 C -0.082 4.082 7 C 0.332 3.668 8 O -0.423 6.423 9 C -0.148 4.148 10 C -0.113 4.113 11 C -0.062 4.062 12 N -0.163 5.163 13 C -0.088 4.088 14 C 0.033 3.967 15 F -0.113 7.113 16 N -0.322 5.322 17 C -0.068 4.068 18 C 0.218 3.782 19 O -0.496 6.496 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.091 0.909 23 C -0.210 4.210 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.203 1.203 27 H -0.192 1.192 28 H -0.193 1.193 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.211 0.789 38 H 0.235 0.765 39 H 0.196 0.804 40 H 0.162 0.838 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.229 0.771 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.735 3.236 -25.117 25.965 hybrid contribution -0.356 0.283 1.555 1.620 sum 5.379 3.519 -23.562 24.423 Atomic orbital electron populations 1.21733 0.92694 1.02030 1.02691 1.22197 0.97434 0.96429 0.88975 0.92018 1.21935 0.77835 1.02621 0.98465 1.47904 1.07973 1.20698 1.57434 1.22449 0.95338 0.90125 1.00333 1.18456 0.87218 0.83148 0.78000 1.90921 1.64466 1.38432 1.48459 1.20629 0.94818 1.04403 0.94918 1.22811 0.93890 0.95784 0.98824 1.23664 0.93384 0.93882 0.95272 1.67694 1.39601 1.09040 1.00000 1.23061 0.87070 0.98512 1.00112 1.19509 0.91459 1.01488 0.84280 1.91705 1.75518 1.90522 1.53566 1.60201 1.35489 1.32349 1.04192 1.21591 1.01911 0.93534 0.89744 1.20929 0.83472 0.88206 0.85545 1.90563 1.55667 1.18046 1.85374 1.41891 1.58695 1.12412 1.08111 1.19647 1.42041 0.95747 0.88654 0.90940 1.25999 0.97238 0.96647 1.01159 1.69673 1.48778 1.09593 1.28074 0.84904 0.78399 0.77888 0.77326 1.20266 1.19176 1.19298 0.88754 0.93500 0.93224 0.84310 0.91060 0.87816 0.88862 0.91025 0.78862 0.76467 0.80448 0.83823 0.92503 0.87815 0.77088 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.42 71.98 0.68 -2.18 16 2 C 0.06 1.46 2.95 44.92 0.13 1.60 16 3 H 0.06 1.28 7.80 -2.39 -0.02 1.26 16 4 C 0.11 2.24 5.23 86.38 0.45 2.69 16 5 N -0.61 -12.47 2.66 -850.02 -2.26 -14.73 16 6 C 0.06 0.56 9.10 127.77 1.16 1.72 16 7 C 0.54 16.56 5.30 86.83 0.46 17.02 16 8 O -0.55 -22.90 15.16 -3.81 -0.06 -22.96 16 9 C -0.14 -3.57 4.94 -19.85 -0.10 -3.67 16 10 C -0.09 -1.30 7.71 22.63 0.17 -1.13 16 11 C 0.09 1.23 11.17 84.64 0.95 2.18 16 12 N -0.45 -9.61 10.33 -195.82 -2.02 -11.64 16 13 C 0.07 1.86 11.17 84.78 0.95 2.80 16 14 C 0.06 1.81 7.31 22.78 0.17 1.98 16 15 F -0.13 -6.12 16.65 44.97 0.75 -5.37 16 16 N -0.68 -26.03 5.88 -495.57 -2.91 -28.94 16 17 C 0.06 2.57 5.97 85.56 0.51 3.08 16 18 C 0.43 23.03 7.82 87.66 0.69 23.72 16 19 O -0.61 -38.31 15.78 -3.08 -0.05 -38.36 16 20 N -0.57 -31.79 5.29 -306.98 -1.62 -33.41 16 21 C -0.33 -20.11 9.68 84.04 0.81 -19.30 16 22 H 0.07 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -51.42 13.05 21.66 0.28 -51.14 16 25 Si 0.99 45.19 29.55 68.60 2.03 47.22 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 32 H 0.14 1.30 8.07 -2.38 -0.02 1.28 16 33 H 0.07 1.83 7.36 -2.39 -0.02 1.81 16 34 H 0.10 0.21 7.57 -2.39 -0.02 0.19 16 35 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 36 H 0.07 0.78 5.66 -2.39 -0.01 0.77 16 37 H 0.19 0.91 6.59 -2.91 -0.02 0.89 16 38 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.18 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.34 14.37 4.31 -89.70 -0.39 13.98 16 41 H 0.06 1.99 8.05 -2.39 -0.02 1.97 16 42 H 0.10 3.69 7.44 -2.39 -0.02 3.67 16 43 H 0.40 20.64 7.90 -92.71 -0.73 19.90 16 44 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -91.31 373.11 1.57 -89.73 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.06 Total: 39.22 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 7.50 Total: 30.36 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -8.54 Total: -139.85 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -0.11 Total: -61.32 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.75 Total: -5.37 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -91.31 1.57 -89.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734318404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.922 kcal (2) G-P(sol) polarization free energy of solvation -91.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds