Wall clock time and date at job start Tue Mar 31 2020 20:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47293 * 2 1 4 4 N 1.46507 * 109.46943 * 119.99875 * 2 1 3 5 5 C 1.34776 * 119.99639 * 274.99562 * 4 2 1 6 6 O 1.21280 * 120.00423 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99515 * 179.97438 * 5 4 2 8 8 S 1.81010 * 109.46866 * 180.02562 * 7 5 4 9 9 C 1.76202 * 99.99749 * 180.02562 * 8 7 5 10 10 H 1.07994 * 120.00293 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99890 * 180.02562 * 9 8 7 12 12 N 1.31633 * 119.99672 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00326 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47018 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47331 * 119.99752 * 13 11 9 16 16 H 1.48502 * 109.47344 * 240.00180 * 13 11 9 17 17 C 1.53004 * 109.47232 * 239.99823 * 2 1 3 18 18 C 1.53490 * 114.20796 * 60.00096 * 17 2 1 19 19 N 1.47062 * 87.98698 * 139.85467 * 18 17 2 20 20 C 1.34777 * 136.06017 * 152.84911 * 19 18 17 21 21 O 1.21613 * 119.99910 * 359.97438 * 20 19 18 22 22 C 1.47104 * 120.00058 * 180.02562 * 20 19 18 23 23 C 1.32991 * 119.99556 * 180.27387 * 22 20 19 24 24 C 1.50707 * 119.99627 * 179.71911 * 23 22 20 25 25 C 1.52998 * 117.49999 * 188.74369 * 24 23 22 26 26 C 1.52999 * 117.49755 * 120.08472 * 24 23 22 27 27 C 1.47076 * 87.88293 * 333.09861 * 19 18 17 28 28 H 1.09005 * 109.47197 * 300.00474 * 1 2 3 29 29 H 1.09008 * 109.46822 * 60.00420 * 1 2 3 30 30 H 1.09001 * 109.47293 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00052 * 95.00232 * 4 2 1 32 32 H 1.09000 * 109.47458 * 300.00109 * 7 5 4 33 33 H 1.08997 * 109.46995 * 60.00759 * 7 5 4 34 34 H 0.97004 * 120.00097 * 179.97438 * 12 11 9 35 35 H 1.09005 * 113.27791 * 286.93493 * 17 2 1 36 36 H 1.09004 * 113.46788 * 25.07344 * 18 17 2 37 37 H 1.09004 * 113.52154 * 254.64114 * 18 17 2 38 38 H 1.08002 * 119.99781 * 359.97438 * 22 20 19 39 39 H 1.07992 * 120.00607 * 359.72198 * 23 22 20 40 40 H 1.08998 * 115.54914 * 334.41904 * 24 23 22 41 41 H 1.09006 * 117.49640 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.49897 * 145.02327 * 25 24 23 43 43 H 1.09003 * 117.50221 * 214.98338 * 26 24 23 44 44 H 1.09001 * 117.49743 * 359.97438 * 26 24 23 45 45 H 1.09006 * 113.46220 * 141.67850 * 27 19 18 46 46 H 1.08990 * 113.47096 * 272.11996 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1585 2.4117 7 6 2.6488 -0.7287 3.5878 8 16 2.7092 0.4343 4.9734 9 6 3.3124 -0.6309 6.2408 10 1 3.5224 -1.6671 6.0207 11 6 3.5177 -0.1382 7.5221 12 7 3.2621 1.1250 7.7902 13 14 4.1565 -1.2675 8.8658 14 1 4.3638 -2.6292 8.3109 15 1 5.4460 -0.7424 9.3822 16 1 3.1682 -1.3285 9.9725 17 6 2.0400 -0.7213 -1.2492 18 6 1.5899 -0.0847 -2.5714 19 7 2.9375 -0.3493 -3.0975 20 6 3.4798 -0.5656 -4.3122 21 8 2.7735 -0.5661 -5.3022 22 6 4.9261 -0.8023 -4.4404 23 6 5.4620 -1.0103 -5.6397 24 6 6.9446 -1.2465 -5.7717 25 6 7.5323 -1.2753 -7.1840 26 6 7.3967 -2.5735 -6.3844 27 6 3.4319 -0.2801 -1.7141 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 2.2490 -1.6318 1.1527 32 1 1.9758 -1.5504 3.8327 33 1 3.6479 -1.1212 3.3987 34 1 3.4052 1.4693 8.6857 35 1 1.9086 -1.8025 -1.2062 36 1 1.3582 0.9769 -2.4853 37 1 0.8071 -0.6469 -3.0806 38 1 5.5533 -0.8022 -3.5612 39 1 4.8349 -1.0101 -6.5189 40 1 7.5606 -0.8225 -4.9787 41 1 6.8467 -1.1230 -8.0177 42 1 8.5352 -0.8706 -7.3201 43 1 8.3104 -3.0224 -5.9949 44 1 6.6219 -3.2759 -6.6917 45 1 4.2123 -1.0089 -1.4952 46 1 3.6958 0.7288 -1.3974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734871961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:10 Heat of formation + Delta-G solvation = -21.863036 kcal Electronic energy + Delta-G solvation = -25265.540480 eV Core-core repulsion = 21475.861424 eV Total energy + Delta-G solvation = -3789.679056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75478 -40.52874 -39.35376 -38.34616 -36.15009 -34.55969 -33.57671 -32.72599 -30.46833 -29.54580 -27.64954 -27.21093 -25.51568 -24.15063 -23.26150 -21.79432 -21.59634 -20.86619 -19.87971 -19.74008 -18.32173 -17.75938 -17.71460 -17.23847 -16.85909 -16.36164 -16.32149 -16.25915 -15.85966 -15.27089 -15.04105 -14.85051 -14.54051 -14.49294 -14.10076 -13.95127 -13.63647 -13.56477 -13.22404 -13.16316 -13.12132 -12.89954 -12.77542 -12.59775 -12.53074 -12.39993 -12.15523 -11.88496 -11.71954 -11.60748 -11.41919 -11.13808 -11.01935 -10.83574 -10.22729 -10.22208 -10.05888 -9.74232 -8.62609 -8.32698 -6.09597 0.24363 1.30243 1.42637 1.49830 1.60140 1.69159 1.74976 2.15368 2.27557 2.33196 2.98786 3.01757 3.17047 3.35036 3.37762 3.71825 3.87579 3.91887 3.95820 4.02562 4.08481 4.13289 4.15810 4.33990 4.37999 4.40043 4.45140 4.48940 4.57191 4.58069 4.63378 4.70776 4.77298 4.81462 4.98563 5.01563 5.08656 5.18301 5.22518 5.34830 5.37972 5.41779 5.44833 5.58480 6.22393 6.59036 6.61331 7.02639 7.09281 7.33938 8.76564 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.001810 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.662700 B =15463.895183 C =17015.075579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.076 0.924 4 N -0.706 5.706 5 C 0.538 3.462 6 O -0.564 6.564 7 C -0.130 4.130 8 S -0.153 6.153 9 C -0.544 4.544 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.256 1.256 15 H -0.275 1.275 16 H -0.276 1.276 17 C -0.111 4.111 18 C 0.109 3.891 19 N -0.647 5.647 20 C 0.568 3.432 21 O -0.596 6.596 22 C -0.218 4.218 23 C -0.024 4.024 24 C -0.152 4.152 25 C -0.169 4.169 26 C -0.161 4.161 27 C 0.104 3.896 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.417 0.583 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.270 0.730 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 -10.042 -27.030 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.094 0.906 4 N -0.360 5.360 5 C 0.323 3.677 6 O -0.442 6.442 7 C -0.282 4.282 8 S 0.074 5.926 9 C -0.692 4.692 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.819 3.181 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.201 1.201 17 C -0.130 4.130 18 C -0.014 4.014 19 N -0.379 5.379 20 C 0.362 3.638 21 O -0.480 6.480 22 C -0.238 4.238 23 C -0.044 4.044 24 C -0.170 4.170 25 C -0.206 4.206 26 C -0.198 4.198 27 C -0.018 4.018 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.255 0.745 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.165 0.835 39 H 0.130 0.870 40 H 0.145 0.855 41 H 0.115 0.885 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.537 -7.999 -27.559 29.053 hybrid contribution 0.447 -1.680 0.975 1.994 sum 4.984 -9.680 -26.584 28.727 Atomic orbital electron populations 1.22152 0.94423 1.03181 1.02254 1.20808 0.94651 0.96604 0.82480 0.90588 1.45771 1.67535 1.14624 1.08095 1.19971 0.76610 0.86514 0.84559 1.90701 1.50601 1.17798 1.85122 1.23388 1.05642 1.03112 0.96033 1.85584 1.86697 1.17376 1.02929 1.23249 1.50595 0.98531 0.96850 0.89872 1.26102 0.95166 0.97135 1.00763 1.70190 1.47002 1.15463 1.22156 0.84931 0.77781 0.78329 0.77074 1.17954 1.20044 1.20110 1.23057 0.95901 1.02249 0.91787 1.23082 0.85926 1.01771 0.90622 1.49521 1.12725 1.69559 1.06142 1.18566 0.89089 0.75684 0.80482 1.90761 1.64411 1.55263 1.37519 1.22430 0.92273 1.08992 1.00133 1.23168 0.95133 0.89045 0.97095 1.21388 0.91949 1.04271 0.99394 1.23138 1.03134 1.01227 0.93098 1.23088 1.03622 0.90225 1.02854 1.23263 0.98101 1.03208 0.77208 0.94536 0.89918 0.90736 0.74548 0.87375 0.87044 0.92077 0.85047 0.88765 0.89808 0.83457 0.86972 0.85520 0.88458 0.86843 0.86675 0.88619 0.87943 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.29 71.98 0.67 -2.10 16 2 C 0.16 2.72 2.48 44.99 0.11 2.83 16 3 H 0.08 1.64 7.35 -2.39 -0.02 1.62 16 4 N -0.71 -14.11 5.08 -442.52 -2.25 -16.36 16 5 C 0.54 17.64 7.81 87.66 0.68 18.32 16 6 O -0.56 -24.09 15.52 -3.03 -0.05 -24.14 16 7 C -0.13 -4.76 6.16 71.24 0.44 -4.32 16 8 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 9 C -0.54 -30.28 9.50 67.95 0.65 -29.64 16 10 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 11 C 0.01 0.73 5.49 84.86 0.47 1.19 16 12 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 13 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 14 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 17 C -0.11 -1.23 3.63 -10.55 -0.04 -1.27 16 18 C 0.11 1.55 7.27 83.18 0.60 2.15 16 19 N -0.65 -11.20 3.69 -863.16 -3.19 -14.39 16 20 C 0.57 12.68 8.01 86.57 0.69 13.37 16 21 O -0.60 -18.19 17.00 -4.07 -0.07 -18.26 16 22 C -0.22 -3.54 9.51 23.43 0.22 -3.31 16 23 C -0.02 -0.37 9.24 24.52 0.23 -0.15 16 24 C -0.15 -1.57 6.00 -11.54 -0.07 -1.64 16 25 C -0.17 -1.41 10.24 30.62 0.31 -1.10 16 26 C -0.16 -1.33 10.24 30.62 0.31 -1.02 16 27 C 0.10 1.25 7.90 83.09 0.66 1.91 16 28 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.08 1.11 7.49 -2.38 -0.02 1.10 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.42 5.37 8.60 -92.71 -0.80 4.57 16 32 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 33 H 0.11 3.58 8.14 -2.40 -0.02 3.57 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.09 1.28 8.11 -2.38 -0.02 1.26 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.15 1.68 7.98 -2.91 -0.02 1.66 16 39 H 0.11 2.03 7.49 -2.91 -0.02 2.01 16 40 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 42 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.09 1.17 7.95 -2.39 -0.02 1.15 16 Total: -1.00 -82.17 407.51 1.72 -80.45 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.18 Total: 16.94 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 5.94 Total: -4.77 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -5.15 Total: -85.65 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.12 Total: -42.40 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -82.17 1.72 -80.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734871961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.586 kcal (2) G-P(sol) polarization free energy of solvation -82.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds