Wall clock time and date at job start Tue Mar 31 2020 20:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46726 * 2 1 4 4 N 1.46497 * 109.46890 * 239.99945 * 2 1 3 5 5 C 1.34768 * 120.00387 * 84.99811 * 4 2 1 6 6 O 1.21285 * 119.99982 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00287 * 179.97438 * 5 4 2 8 8 S 1.81005 * 109.47103 * 180.02562 * 7 5 4 9 9 C 1.76203 * 99.99551 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00114 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99570 * 179.97438 * 9 8 7 12 12 N 1.31630 * 120.00120 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99636 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47485 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47221 * 120.00342 * 13 11 9 16 16 H 1.48509 * 109.46752 * 240.00053 * 13 11 9 17 17 C 1.52998 * 109.46967 * 119.99545 * 2 1 3 18 18 C 1.53947 * 113.74145 * 183.13777 * 17 2 1 19 19 N 1.47581 * 86.23952 * 137.90152 * 18 17 2 20 20 C 1.34777 * 134.49080 * 155.43306 * 19 18 17 21 21 O 1.21609 * 120.00194 * 359.97438 * 20 19 18 22 22 C 1.47103 * 119.99569 * 179.97438 * 20 19 18 23 23 C 1.32997 * 119.99643 * 174.51520 * 22 20 19 24 24 C 1.50699 * 120.00008 * 352.59266 * 23 22 20 25 25 C 1.53005 * 117.49758 * 181.95193 * 24 23 22 26 26 C 1.53002 * 59.99997 * 252.50591 * 25 24 23 27 27 C 1.47814 * 90.92536 * 335.45900 * 19 18 17 28 28 H 1.08997 * 109.47075 * 64.14974 * 1 2 3 29 29 H 1.09003 * 109.47277 * 184.15289 * 1 2 3 30 30 H 1.09005 * 109.47181 * 304.15184 * 1 2 3 31 31 H 0.96999 * 119.99703 * 264.99891 * 4 2 1 32 32 H 1.09004 * 109.47277 * 300.00042 * 7 5 4 33 33 H 1.08998 * 109.47127 * 60.00511 * 7 5 4 34 34 H 0.96993 * 119.99896 * 179.97438 * 12 11 9 35 35 H 1.09007 * 112.94513 * 51.55169 * 17 2 1 36 36 H 1.08997 * 113.77143 * 252.26011 * 18 17 2 37 37 H 1.08997 * 113.76509 * 23.54095 * 18 17 2 38 38 H 1.07997 * 120.00574 * 354.51398 * 22 20 19 39 39 H 1.08003 * 119.99625 * 172.58539 * 23 22 20 40 40 H 1.09001 * 115.54885 * 327.66078 * 24 23 22 41 41 H 1.08999 * 117.49689 * 359.97438 * 25 24 23 42 42 H 1.09004 * 117.49667 * 145.01781 * 25 24 23 43 43 H 1.08995 * 117.49810 * 252.50964 * 26 25 24 44 44 H 1.09001 * 117.51378 * 107.48050 * 26 25 24 45 45 H 1.08994 * 113.66910 * 270.24277 * 27 19 18 46 46 H 1.09001 * 113.93635 * 138.88551 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6498 -0.7287 -3.5874 8 16 2.7112 0.4344 -4.9729 9 6 3.3142 -0.6310 -6.2402 10 1 3.5235 -1.6673 -6.0202 11 6 3.5200 -0.1382 -7.5214 12 7 3.2653 1.1251 -7.7895 13 14 4.1599 -1.2675 -8.8648 14 1 4.3672 -2.6292 -8.3097 15 1 3.1723 -1.3287 -9.9720 16 1 5.4497 -0.7420 -9.3804 17 6 2.0400 -0.7211 1.2493 18 6 3.5732 -0.7120 1.3878 19 7 3.3451 -0.4333 2.8190 20 6 4.0584 -0.6314 3.9452 21 8 5.1559 -1.1520 3.8862 22 6 3.5094 -0.2178 5.2458 23 6 4.1626 -0.5106 6.3667 24 6 5.3734 -1.4067 6.3211 25 6 6.0539 -1.7428 7.6496 26 6 6.7273 -0.7831 6.6665 27 6 2.0201 0.1492 2.5190 28 1 -0.3633 0.4481 -0.9248 29 1 -0.3634 -1.0250 0.0744 30 1 -0.3634 0.5769 0.8505 31 1 2.2490 -1.6318 -1.1525 32 1 3.6492 -1.1205 -3.3979 33 1 1.9776 -1.5510 -3.8325 34 1 3.4095 1.4695 -8.6847 35 1 1.5931 -1.7063 1.3834 36 1 4.0373 -1.6796 1.1971 37 1 4.0577 0.1048 0.8529 38 1 2.5761 0.3236 5.2904 39 1 3.8253 -0.1061 7.3096 40 1 5.3569 -2.1805 5.5536 41 1 5.6261 -1.3156 8.5565 42 1 6.4852 -2.7382 7.7564 43 1 7.6014 -1.1470 6.1267 44 1 6.7422 0.2754 6.9264 45 1 2.0483 1.2201 2.3179 46 1 1.2430 -0.1296 3.2306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734871962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:14 Heat of formation + Delta-G solvation = 6.405782 kcal Electronic energy + Delta-G solvation = -25602.329466 eV Core-core repulsion = 21813.876238 eV Total energy + Delta-G solvation = -3788.453228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84673 -39.43615 -38.54770 -37.21310 -35.01021 -32.85583 -32.43561 -31.58897 -29.37739 -28.51394 -26.54025 -25.49836 -24.72809 -23.07420 -22.63757 -21.38033 -20.55080 -20.27526 -18.90401 -17.88805 -17.43132 -16.73510 -16.40491 -16.18679 -15.59538 -15.20878 -15.03351 -14.81053 -14.59674 -14.32358 -13.98293 -13.74238 -13.65172 -13.22632 -13.08807 -12.95360 -12.79700 -12.59108 -12.34807 -12.04431 -11.96045 -11.88244 -11.71609 -11.40872 -11.22129 -11.07432 -11.02656 -11.00805 -10.76000 -10.70034 -9.85124 -9.80601 -9.46990 -9.40211 -9.08704 -8.99359 -8.89571 -8.24302 -6.50748 -6.22638 -3.93007 0.96537 2.48922 2.93945 2.99327 3.06440 3.21240 3.27015 3.31435 3.61062 3.65263 4.02939 4.14231 4.19752 4.28836 4.40513 4.57894 4.67122 4.73164 4.82111 4.88709 4.96622 5.00772 5.11537 5.12827 5.12958 5.23392 5.25719 5.29917 5.35409 5.41837 5.52788 5.55935 5.65034 5.75740 5.78848 5.81360 5.87802 5.95125 5.96002 6.12895 6.14563 6.15905 6.60427 7.39672 7.59394 7.67380 7.92694 8.34816 8.58475 9.23102 10.84854 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.001794 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.273843 B =15600.656167 C =16617.384735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.092 0.908 4 N -0.735 5.735 5 C 0.534 3.466 6 O -0.517 6.517 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.131 4.131 18 C 0.115 3.885 19 N -0.644 5.644 20 C 0.565 3.435 21 O -0.534 6.534 22 C -0.214 4.214 23 C -0.032 4.032 24 C -0.131 4.131 25 C -0.186 4.186 26 C -0.156 4.156 27 C 0.113 3.887 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 -5.452 29.962 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.110 0.890 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.151 4.151 18 C -0.007 4.007 19 N -0.380 5.380 20 C 0.358 3.642 21 O -0.413 6.413 22 C -0.235 4.235 23 C -0.052 4.052 24 C -0.149 4.149 25 C -0.223 4.223 26 C -0.193 4.193 27 C -0.011 4.011 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.545 -3.637 29.882 30.210 hybrid contribution 0.693 -2.386 -0.812 2.614 sum -1.852 -6.023 29.070 29.745 Atomic orbital electron populations 1.22177 0.94921 1.02072 1.02964 1.20827 0.94338 0.97284 0.82781 0.89000 1.46039 1.69487 1.13982 1.09379 1.20299 0.76720 0.87201 0.83713 1.90703 1.48269 1.15738 1.84363 1.23540 1.03700 1.04874 0.98371 1.85387 1.86314 1.12890 0.98817 1.22913 1.50892 0.98193 0.96347 0.90868 1.24992 0.95088 0.95534 0.97967 1.70023 1.45612 1.13203 1.21443 0.86121 0.78532 0.80150 0.80719 1.19616 1.20566 1.20569 1.23491 0.96309 1.00802 0.94484 1.23177 0.95560 1.02543 0.79466 1.49973 1.20100 1.61448 1.06432 1.18294 0.83931 0.78515 0.83492 1.90774 1.20091 1.44037 1.86383 1.22509 1.02213 1.06689 0.92039 1.23133 0.93016 0.91643 0.97367 1.21585 0.91836 1.02274 0.99155 1.23084 1.04895 1.00863 0.93425 1.22810 0.95411 0.98634 1.02466 1.23266 0.84445 0.98663 0.94682 0.91403 0.92464 0.91814 0.76821 0.89210 0.89227 0.92237 0.87364 0.89824 0.89245 0.85453 0.85517 0.85003 0.88891 0.88589 0.88461 0.88986 0.89040 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.46 37.16 0.35 -1.10 16 2 C 0.15 1.45 2.31 -67.93 -0.16 1.30 16 3 H 0.09 1.05 7.44 -51.93 -0.39 0.66 16 4 N -0.73 -8.54 4.91 -53.81 -0.26 -8.80 16 5 C 0.53 9.25 7.81 -10.99 -0.09 9.17 16 6 O -0.52 -11.02 15.52 5.55 0.09 -10.93 16 7 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 9 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.02 13.22 55.49 0.73 -25.28 16 13 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.13 -0.90 3.36 -89.68 -0.30 -1.21 16 18 C 0.11 1.04 8.22 -2.97 -0.02 1.02 16 19 N -0.64 -5.96 3.62 -178.77 -0.65 -6.60 16 20 C 0.56 6.22 7.91 -12.66 -0.10 6.12 16 21 O -0.53 -7.61 14.03 5.27 0.07 -7.54 16 22 C -0.21 -1.69 9.81 -37.80 -0.37 -2.06 16 23 C -0.03 -0.23 9.74 -36.13 -0.35 -0.59 16 24 C -0.13 -1.16 4.35 -91.77 -0.40 -1.56 16 25 C -0.19 -1.25 10.23 -26.73 -0.27 -1.53 16 26 C -0.16 -1.28 10.23 -26.73 -0.27 -1.56 16 27 C 0.11 0.69 8.02 -2.84 -0.02 0.67 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.40 3.59 8.60 -40.82 -0.35 3.24 16 32 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.13 0.68 7.92 -52.49 -0.42 0.27 16 39 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.13 1.48 6.22 -51.93 -0.32 1.16 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.52 8.00 -51.93 -0.42 0.10 16 46 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -36.20 403.53 -10.11 -46.31 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.35 Total: 1.22 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.59 Total: -6.94 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.18 Total: -40.69 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.16 Total: -18.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.20 -10.11 -46.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734871962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.714 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds