Wall clock time and date at job start Tue Mar 31 2020 20:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46726 * 2 1 4 4 N 1.46497 * 109.46890 * 239.99945 * 2 1 3 5 5 C 1.34768 * 120.00387 * 84.99811 * 4 2 1 6 6 O 1.21285 * 119.99982 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00287 * 179.97438 * 5 4 2 8 8 S 1.81005 * 109.47103 * 180.02562 * 7 5 4 9 9 C 1.76203 * 99.99551 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00114 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99570 * 179.97438 * 9 8 7 12 12 N 1.31630 * 120.00120 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99636 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47485 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47221 * 120.00342 * 13 11 9 16 16 H 1.48509 * 109.46752 * 240.00053 * 13 11 9 17 17 C 1.52998 * 109.46967 * 119.99545 * 2 1 3 18 18 C 1.53947 * 113.74145 * 183.13777 * 17 2 1 19 19 N 1.47581 * 86.23952 * 137.90152 * 18 17 2 20 20 C 1.34777 * 134.49080 * 155.43306 * 19 18 17 21 21 O 1.21609 * 120.00194 * 359.97438 * 20 19 18 22 22 C 1.47103 * 119.99569 * 179.97438 * 20 19 18 23 23 C 1.32997 * 119.99643 * 174.51520 * 22 20 19 24 24 C 1.50699 * 120.00008 * 352.59266 * 23 22 20 25 25 C 1.53005 * 117.49758 * 181.95193 * 24 23 22 26 26 C 1.53002 * 59.99997 * 252.50591 * 25 24 23 27 27 C 1.47814 * 90.92536 * 335.45900 * 19 18 17 28 28 H 1.08997 * 109.47075 * 64.14974 * 1 2 3 29 29 H 1.09003 * 109.47277 * 184.15289 * 1 2 3 30 30 H 1.09005 * 109.47181 * 304.15184 * 1 2 3 31 31 H 0.96999 * 119.99703 * 264.99891 * 4 2 1 32 32 H 1.09004 * 109.47277 * 300.00042 * 7 5 4 33 33 H 1.08998 * 109.47127 * 60.00511 * 7 5 4 34 34 H 0.96993 * 119.99896 * 179.97438 * 12 11 9 35 35 H 1.09007 * 112.94513 * 51.55169 * 17 2 1 36 36 H 1.08997 * 113.77143 * 252.26011 * 18 17 2 37 37 H 1.08997 * 113.76509 * 23.54095 * 18 17 2 38 38 H 1.07997 * 120.00574 * 354.51398 * 22 20 19 39 39 H 1.08003 * 119.99625 * 172.58539 * 23 22 20 40 40 H 1.09001 * 115.54885 * 327.66078 * 24 23 22 41 41 H 1.08999 * 117.49689 * 359.97438 * 25 24 23 42 42 H 1.09004 * 117.49667 * 145.01781 * 25 24 23 43 43 H 1.08995 * 117.49810 * 252.50964 * 26 25 24 44 44 H 1.09001 * 117.51378 * 107.48050 * 26 25 24 45 45 H 1.08994 * 113.66910 * 270.24277 * 27 19 18 46 46 H 1.09001 * 113.93635 * 138.88551 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6498 -0.7287 -3.5874 8 16 2.7112 0.4344 -4.9729 9 6 3.3142 -0.6310 -6.2402 10 1 3.5235 -1.6673 -6.0202 11 6 3.5200 -0.1382 -7.5214 12 7 3.2653 1.1251 -7.7895 13 14 4.1599 -1.2675 -8.8648 14 1 4.3672 -2.6292 -8.3097 15 1 3.1723 -1.3287 -9.9720 16 1 5.4497 -0.7420 -9.3804 17 6 2.0400 -0.7211 1.2493 18 6 3.5732 -0.7120 1.3878 19 7 3.3451 -0.4333 2.8190 20 6 4.0584 -0.6314 3.9452 21 8 5.1559 -1.1520 3.8862 22 6 3.5094 -0.2178 5.2458 23 6 4.1626 -0.5106 6.3667 24 6 5.3734 -1.4067 6.3211 25 6 6.0539 -1.7428 7.6496 26 6 6.7273 -0.7831 6.6665 27 6 2.0201 0.1492 2.5190 28 1 -0.3633 0.4481 -0.9248 29 1 -0.3634 -1.0250 0.0744 30 1 -0.3634 0.5769 0.8505 31 1 2.2490 -1.6318 -1.1525 32 1 3.6492 -1.1205 -3.3979 33 1 1.9776 -1.5510 -3.8325 34 1 3.4095 1.4695 -8.6847 35 1 1.5931 -1.7063 1.3834 36 1 4.0373 -1.6796 1.1971 37 1 4.0577 0.1048 0.8529 38 1 2.5761 0.3236 5.2904 39 1 3.8253 -0.1061 7.3096 40 1 5.3569 -2.1805 5.5536 41 1 5.6261 -1.3156 8.5565 42 1 6.4852 -2.7382 7.7564 43 1 7.6014 -1.1470 6.1267 44 1 6.7422 0.2754 6.9264 45 1 2.0483 1.2201 2.3179 46 1 1.2430 -0.1296 3.2306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734871962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:13 Heat of formation + Delta-G solvation = -17.748262 kcal Electronic energy + Delta-G solvation = -25603.376864 eV Core-core repulsion = 21813.876238 eV Total energy + Delta-G solvation = -3789.500626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61058 -40.56053 -39.42350 -37.91532 -36.08402 -34.58426 -33.48316 -32.70599 -30.38049 -29.61920 -27.66727 -27.15588 -25.45183 -23.81069 -23.20427 -22.14479 -21.58242 -21.19818 -19.79532 -19.57740 -18.18440 -17.74023 -17.68520 -16.90796 -16.88195 -16.39903 -16.37328 -16.02075 -15.83691 -15.34345 -14.99269 -14.67240 -14.54788 -14.38707 -14.29217 -13.86031 -13.72375 -13.57374 -13.19627 -13.15704 -13.03425 -12.91531 -12.76389 -12.59817 -12.46733 -12.44371 -12.02661 -11.92556 -11.74285 -11.68827 -11.30482 -11.15889 -10.88698 -10.59744 -10.26232 -10.12973 -10.03182 -9.63302 -8.65384 -8.35005 -6.12206 0.36358 1.27874 1.40743 1.47421 1.58413 1.66436 1.82473 2.22523 2.26450 2.30688 2.99288 3.05911 3.27352 3.37852 3.51943 3.70234 3.74797 3.96888 4.03571 4.09062 4.15289 4.16029 4.30090 4.32642 4.44160 4.48212 4.50055 4.53704 4.53844 4.60818 4.64335 4.75154 4.79153 4.85025 4.97439 5.06141 5.20472 5.22157 5.23692 5.35043 5.40241 5.42326 5.56289 5.59568 6.20045 6.55393 6.70289 7.06789 7.16410 7.30222 8.74397 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.001794 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.273843 B =15600.656167 C =16617.384735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.072 0.928 4 N -0.709 5.709 5 C 0.537 3.463 6 O -0.563 6.563 7 C -0.132 4.132 8 S -0.150 6.150 9 C -0.546 4.546 10 H 0.082 0.918 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.257 1.257 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.109 4.109 18 C 0.103 3.897 19 N -0.648 5.648 20 C 0.550 3.450 21 O -0.581 6.581 22 C -0.222 4.222 23 C -0.025 4.025 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.170 4.170 27 C 0.118 3.882 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.415 0.585 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -7.143 32.349 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.090 0.910 4 N -0.363 5.363 5 C 0.323 3.677 6 O -0.441 6.441 7 C -0.283 4.283 8 S 0.077 5.923 9 C -0.694 4.694 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.181 1.181 15 H -0.198 1.198 16 H -0.200 1.200 17 C -0.128 4.128 18 C -0.020 4.020 19 N -0.382 5.382 20 C 0.345 3.655 21 O -0.463 6.463 22 C -0.242 4.242 23 C -0.044 4.044 24 C -0.168 4.168 25 C -0.201 4.201 26 C -0.207 4.207 27 C -0.004 4.004 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.252 0.748 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.177 0.823 39 H 0.180 0.820 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.777 -5.363 32.307 32.967 hybrid contribution 1.086 -1.897 -1.438 2.616 sum -2.692 -7.260 30.870 31.826 Atomic orbital electron populations 1.22135 0.93696 1.03433 1.02331 1.20978 0.95144 0.96468 0.82542 0.90990 1.45805 1.67552 1.14604 1.08337 1.19946 0.76638 0.86531 0.84566 1.90692 1.50674 1.17631 1.85132 1.23397 1.05412 1.03244 0.96261 1.85536 1.86667 1.17316 1.02807 1.23248 1.50809 0.98479 0.96894 0.90013 1.26105 0.95095 0.97174 1.00725 1.70182 1.46908 1.15419 1.22217 0.84926 0.77838 0.78237 0.77076 1.18116 1.19840 1.20034 1.23361 0.94215 1.01806 0.93411 1.23209 0.97193 1.01669 0.79957 1.50111 1.21101 1.61039 1.05935 1.18981 0.83610 0.77982 0.84936 1.90758 1.22195 1.46200 1.87194 1.22664 1.03582 1.07536 0.90405 1.23438 0.91742 0.90531 0.98727 1.21527 0.93024 1.02457 0.99766 1.23170 1.03084 1.00609 0.93214 1.22841 0.94847 0.99476 1.03525 1.23476 0.83627 0.98793 0.94504 0.94916 0.90570 0.89095 0.74849 0.87539 0.87291 0.92009 0.85052 0.90392 0.90932 0.82321 0.82033 0.88133 0.86533 0.88376 0.89928 0.88170 0.88453 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.46 71.98 0.68 -1.74 16 2 C 0.15 2.65 2.31 44.99 0.10 2.75 16 3 H 0.07 1.60 7.44 -2.39 -0.02 1.58 16 4 N -0.71 -15.54 4.91 -442.54 -2.17 -17.71 16 5 C 0.54 18.61 7.81 87.66 0.68 19.29 16 6 O -0.56 -24.78 15.52 -3.04 -0.05 -24.83 16 7 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 8 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 9 C -0.55 -31.20 9.50 67.96 0.65 -30.56 16 10 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 11 C 0.01 0.78 5.49 84.86 0.47 1.25 16 12 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 13 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 C -0.11 -1.21 3.36 -10.14 -0.03 -1.24 16 18 C 0.10 1.79 8.22 86.48 0.71 2.50 16 19 N -0.65 -11.09 3.62 -837.75 -3.03 -14.12 16 20 C 0.55 11.81 7.91 86.57 0.68 12.50 16 21 O -0.58 -17.27 14.03 -4.06 -0.06 -17.33 16 22 C -0.22 -3.00 9.81 23.43 0.23 -2.77 16 23 C -0.03 -0.31 9.74 24.52 0.24 -0.07 16 24 C -0.15 -2.59 4.35 -11.54 -0.05 -2.64 16 25 C -0.16 -1.97 10.23 30.60 0.31 -1.66 16 26 C -0.17 -2.77 10.23 30.60 0.31 -2.46 16 27 C 0.12 1.07 8.02 86.44 0.69 1.76 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.41 6.48 8.60 -92.71 -0.80 5.69 16 32 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 33 H 0.11 3.77 8.14 -2.40 -0.02 3.76 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 38 H 0.16 1.06 7.92 -2.91 -0.02 1.04 16 39 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.10 2.40 6.22 -2.39 -0.01 2.39 16 41 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.10 0.83 8.00 -2.39 -0.02 0.81 16 46 H 0.12 0.37 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -84.66 403.53 2.14 -82.51 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.18 Total: 18.54 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 6.12 Total: -7.73 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -4.92 Total: -87.49 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.10 Total: -42.16 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -84.66 2.14 -82.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734871962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.763 kcal (2) G-P(sol) polarization free energy of solvation -84.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds