Wall clock time and date at job start Tue Mar 31 2020 20:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47415 * 2 1 4 4 N 1.46498 * 109.47082 * 239.99545 * 2 1 3 5 5 C 1.34782 * 119.99915 * 85.00170 * 4 2 1 6 6 O 1.21279 * 119.99641 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99632 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.46724 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00105 * 179.97438 * 8 7 5 10 10 H 1.07997 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.38800 * 120.00252 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99654 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00098 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47384 * 90.00187 * 13 11 9 15 15 H 1.48507 * 109.47011 * 210.00286 * 13 11 9 16 16 H 1.48499 * 109.46994 * 329.99825 * 13 11 9 17 17 C 1.53003 * 109.46848 * 119.99978 * 2 1 3 18 18 C 1.53498 * 114.20301 * 185.05652 * 17 2 1 19 19 N 1.47069 * 87.98278 * 139.65289 * 18 17 2 20 20 C 1.34778 * 136.05498 * 152.83941 * 19 18 17 21 21 O 1.21611 * 120.00145 * 359.72898 * 20 19 18 22 22 C 1.47107 * 119.99650 * 179.97438 * 20 19 18 23 23 C 1.32998 * 119.99787 * 179.72703 * 22 20 19 24 24 C 1.50701 * 119.99780 * 180.02562 * 23 22 20 25 25 C 1.52996 * 117.49605 * 188.74763 * 24 23 22 26 26 C 1.52997 * 117.49824 * 120.08706 * 24 23 22 27 27 C 1.47065 * 87.88475 * 333.09785 * 19 18 17 28 28 H 1.09003 * 109.47437 * 179.11905 * 1 2 3 29 29 H 1.08996 * 109.46881 * 299.12422 * 1 2 3 30 30 H 1.09005 * 109.46521 * 59.12388 * 1 2 3 31 31 H 0.97006 * 120.00498 * 265.00270 * 4 2 1 32 32 H 1.08995 * 109.47144 * 299.99702 * 7 5 4 33 33 H 1.08998 * 109.47632 * 60.00363 * 7 5 4 34 34 H 0.97003 * 119.99789 * 180.02562 * 12 11 9 35 35 H 1.08994 * 113.28031 * 51.98453 * 17 2 1 36 36 H 1.08997 * 113.47062 * 24.87294 * 18 17 2 37 37 H 1.08998 * 113.51961 * 254.43740 * 18 17 2 38 38 H 1.07995 * 119.99952 * 359.72774 * 22 20 19 39 39 H 1.07994 * 119.99734 * 0.02562 * 23 22 20 40 40 H 1.09000 * 115.54737 * 334.41367 * 24 23 22 41 41 H 1.08999 * 117.50001 * 359.97438 * 25 24 23 42 42 H 1.09006 * 117.49607 * 145.01687 * 25 24 23 43 43 H 1.09007 * 117.49914 * 214.97422 * 26 24 23 44 44 H 1.09002 * 117.50112 * 359.97438 * 26 24 23 45 45 H 1.09002 * 113.46475 * 141.68160 * 27 19 18 46 46 H 1.08996 * 113.47036 * 272.11761 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8591 1.1585 -2.4115 7 6 2.6500 -0.7288 -3.5874 8 16 2.7115 0.4343 -4.9728 9 6 3.3159 -0.6306 -6.2398 10 1 3.5251 -1.6671 -6.0198 11 6 3.5222 -0.1378 -7.5208 12 7 3.2668 1.1254 -7.7891 13 14 4.1624 -1.2670 -8.8642 14 1 3.0173 -1.9047 -9.5622 15 1 4.9577 -0.4766 -9.8379 16 1 5.0212 -2.3173 -8.2604 17 6 2.0400 -0.7213 1.2493 18 6 3.5646 -0.6787 1.4223 19 7 3.3433 -0.4661 2.8606 20 6 4.0246 -0.7208 3.9953 21 8 5.1105 -1.2659 3.9433 22 6 3.4523 -0.3442 5.2971 23 6 4.1221 -0.6004 6.4171 24 6 3.5355 -0.2151 7.7507 25 6 4.4340 -0.3465 8.9821 26 6 3.2860 -1.3350 8.7628 27 6 2.0487 0.1406 2.5163 28 1 -0.3634 -1.0275 -0.0158 29 1 -0.3633 0.5002 0.8977 30 1 -0.3632 0.5274 -0.8821 31 1 2.2491 -1.6319 -1.1526 32 1 3.6493 -1.1205 -3.3978 33 1 1.9778 -1.5511 -3.8325 34 1 3.4107 1.4697 -8.6844 35 1 1.6022 -1.7102 1.3846 36 1 4.0343 0.1701 0.9253 37 1 4.0549 -1.6249 1.1937 38 1 2.4882 0.1403 5.3432 39 1 5.0863 -1.0845 6.3708 40 1 2.8265 0.6126 7.7310 41 1 5.4492 -0.7120 8.8277 42 1 4.3158 0.3946 9.7727 43 1 2.4131 -1.2439 9.4093 44 1 3.5457 -2.3506 8.4639 45 1 1.2517 -0.1110 3.2161 46 1 2.1105 1.2098 2.3137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734871963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:16 Heat of formation + Delta-G solvation = 2.049687 kcal Electronic energy + Delta-G solvation = -25244.164015 eV Core-core repulsion = 21455.521892 eV Total energy + Delta-G solvation = -3788.642123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97757 -39.34876 -38.50675 -37.78817 -35.06234 -32.91319 -32.43119 -31.61364 -29.47444 -28.50800 -26.40314 -25.49720 -25.01150 -23.25094 -22.92037 -21.05628 -20.45782 -20.24964 -19.14163 -17.91266 -17.54956 -16.78718 -16.52319 -16.34431 -15.71807 -15.34231 -15.05553 -14.80644 -14.75654 -14.40451 -14.03936 -13.84364 -13.46942 -13.23219 -13.10495 -12.92452 -12.81741 -12.59804 -12.37954 -12.17656 -12.01092 -12.00303 -11.76168 -11.66814 -11.16461 -11.06512 -11.02482 -11.01687 -10.93340 -10.75760 -10.17621 -9.81740 -9.61584 -9.41540 -9.07944 -9.04397 -8.93424 -8.24487 -6.50444 -6.22118 -3.92608 0.90734 2.45152 2.90317 2.97498 3.06494 3.22373 3.26974 3.30852 3.39320 3.59706 3.86753 4.06226 4.20271 4.30344 4.37385 4.41340 4.41432 4.57179 4.68679 4.80461 4.83473 4.99211 5.08760 5.09288 5.12062 5.13290 5.21934 5.25156 5.31322 5.34753 5.37886 5.50493 5.52593 5.54802 5.65400 5.74136 5.88096 5.95087 5.95855 6.00157 6.13231 6.15400 6.60253 7.37376 7.59403 7.67437 7.85380 8.34931 8.58497 9.23484 10.85300 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027211 B = 0.001619 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.765468 B =17288.515902 C =17888.200745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.092 0.908 4 N -0.735 5.735 5 C 0.535 3.465 6 O -0.517 6.517 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.134 4.134 18 C 0.111 3.889 19 N -0.645 5.645 20 C 0.575 3.425 21 O -0.546 6.546 22 C -0.207 4.207 23 C -0.033 4.033 24 C -0.142 4.142 25 C -0.170 4.170 26 C -0.165 4.165 27 C 0.112 3.888 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 -4.862 31.423 32.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.110 0.890 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.391 6.391 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.154 4.154 18 C -0.012 4.012 19 N -0.379 5.379 20 C 0.368 3.632 21 O -0.425 6.425 22 C -0.228 4.228 23 C -0.053 4.053 24 C -0.160 4.160 25 C -0.207 4.207 26 C -0.202 4.202 27 C -0.012 4.012 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.286 -3.068 31.364 31.804 hybrid contribution 0.748 -2.441 -0.864 2.696 sum -3.538 -5.509 30.500 31.195 Atomic orbital electron populations 1.22172 0.94858 1.02291 1.02812 1.20753 0.94353 0.97192 0.82596 0.88955 1.46042 1.69498 1.13997 1.09357 1.20302 0.76708 0.87199 0.83706 1.90700 1.48264 1.15733 1.84358 1.23539 1.03706 1.04880 0.98370 1.85379 1.86269 1.12896 0.98815 1.22870 1.50967 0.98172 0.96402 0.90930 1.24985 0.95078 0.95518 0.97947 1.70018 1.45596 1.13202 1.21484 0.86175 0.78840 0.79975 0.80557 1.20273 1.20748 1.19695 1.23265 0.96429 1.00979 0.94699 1.23020 0.95887 1.03043 0.79223 1.49445 1.21778 1.60636 1.06061 1.18089 0.83600 0.78429 0.83102 1.90809 1.20912 1.43782 1.86952 1.22383 1.01938 1.06837 0.91621 1.23081 0.98147 0.92357 0.91702 1.21331 1.03806 1.02142 0.88738 1.23043 0.96263 1.02697 0.98714 1.23006 1.00721 0.95367 1.01127 1.22977 0.85282 0.98497 0.94451 0.92399 0.91805 0.91372 0.76786 0.89203 0.89224 0.92188 0.87094 0.89130 0.90055 0.85628 0.85415 0.86653 0.88211 0.88135 0.88074 0.88290 0.89878 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.16 1.48 2.34 -67.93 -0.16 1.32 16 3 H 0.09 1.04 7.44 -51.93 -0.39 0.65 16 4 N -0.73 -8.55 4.96 -53.80 -0.27 -8.82 16 5 C 0.53 9.25 7.81 -10.98 -0.09 9.17 16 6 O -0.52 -10.98 15.52 5.56 0.09 -10.90 16 7 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 8 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 9 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 10 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 13 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 17 C -0.13 -0.94 3.48 -90.24 -0.31 -1.25 16 18 C 0.11 1.02 8.08 -8.50 -0.07 0.95 16 19 N -0.64 -6.18 3.69 -186.79 -0.69 -6.87 16 20 C 0.58 6.65 8.01 -12.66 -0.10 6.55 16 21 O -0.55 -8.49 17.00 5.27 0.09 -8.40 16 22 C -0.21 -1.70 9.51 -37.80 -0.36 -2.06 16 23 C -0.03 -0.25 9.24 -36.12 -0.33 -0.59 16 24 C -0.14 -0.76 6.00 -91.77 -0.55 -1.31 16 25 C -0.17 -0.77 10.24 -26.70 -0.27 -1.05 16 26 C -0.17 -0.74 10.24 -26.69 -0.27 -1.01 16 27 C 0.11 0.70 7.88 -8.64 -0.07 0.64 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.40 3.61 8.60 -40.82 -0.35 3.26 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.13 0.74 7.98 -52.49 -0.42 0.32 16 39 H 0.13 1.12 7.49 -52.49 -0.39 0.73 16 40 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.53 8.00 -51.93 -0.42 0.12 16 LS Contribution 408.88 15.07 6.16 6.16 Total: -1.00 -36.74 408.88 -10.36 -47.10 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.43 Total: -0.12 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.82 Total: -5.36 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.22 Total: -40.98 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.18 Total: -19.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.74 -10.36 -47.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734871963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.150 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds