Wall clock time and date at job start Tue Mar 31 2020 20:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.53000 * 109.47214 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99813 * 179.97438 * 7 6 5 9 9 O 1.21605 * 120.00277 * 359.97438 * 8 7 6 10 10 C 1.43204 * 119.99592 * 179.97438 * 8 7 6 11 11 C 8.34472 * 150.67030 * 113.22512 * 2 1 3 12 12 C 9.65807 * 154.84529 * 111.55000 * 2 1 3 13 13 C 1.52996 * 117.49970 * 198.32324 * 12 11 10 14 14 C 1.52994 * 117.49900 * 129.66149 * 12 11 10 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 30 30 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 1.09004 * 109.46768 * 299.99665 * 6 5 4 36 36 H 1.09003 * 109.47442 * 59.99732 * 6 5 4 37 37 H 0.96999 * 119.99924 * 359.97438 * 7 6 5 38 38 H 1.09000 * 115.54743 * 343.99407 * 12 11 10 39 39 H 1.09000 * 117.49834 * 359.97438 * 13 12 11 40 40 H 1.08996 * 117.50247 * 145.02395 * 13 12 11 41 41 H 1.09004 * 117.50175 * 214.98368 * 14 12 11 42 42 H 1.09006 * 117.49713 * 359.97438 * 14 12 11 43 43 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 44 44 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 45 45 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 46 46 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3347 2.5627 7 7 5.5349 -1.2308 2.6247 8 6 6.2078 -1.7957 3.6467 9 8 5.6032 -2.3914 4.5175 10 6 7.6350 -1.6945 3.7070 11 6 8.8050 -1.6119 3.7563 12 6 10.2721 -1.5079 3.8183 13 6 10.8672 -0.1742 4.2744 14 6 10.9588 -0.5909 2.8043 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.9724 -0.9333 -8.4677 24 14 3.1586 1.6548 -7.9018 25 1 4.3772 2.4685 -7.6605 26 1 2.7493 1.7861 -9.3232 27 1 2.0611 2.1350 -7.0243 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.6403 -0.8755 3.4506 36 1 3.7866 -2.3850 2.5187 37 1 6.0172 -0.7553 1.9303 38 1 10.7960 -2.4185 4.1091 39 1 10.1724 0.6264 4.5280 40 1 11.7828 -0.2072 4.8647 41 1 11.9348 -0.8979 2.4281 42 1 10.3243 -0.0649 2.0909 43 1 2.2491 -1.6317 -1.1525 44 1 3.6494 -1.1203 -3.3979 45 1 1.9778 -1.5509 -3.8325 46 1 4.1164 -0.5889 -9.3630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735017640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:38 Heat of formation + Delta-G solvation = -16.039743 kcal Electronic energy + Delta-G solvation = -24709.685398 eV Core-core repulsion = 20920.258858 eV Total energy + Delta-G solvation = -3789.426539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.07337 -39.55392 -38.12480 -36.94501 -35.29183 -33.32967 -32.48757 -32.42914 -30.91035 -28.67247 -27.01663 -25.63537 -24.82782 -23.00918 -22.67310 -21.94887 -21.41635 -20.43261 -19.09716 -17.90000 -17.09966 -16.73981 -16.70688 -16.18413 -15.90128 -15.56027 -15.10301 -14.99686 -14.76402 -14.58723 -14.04871 -13.79082 -13.47866 -13.28121 -13.13074 -12.83251 -12.80262 -12.57571 -12.47004 -12.13882 -12.08023 -11.93321 -11.83651 -11.51906 -11.30963 -11.26155 -11.03664 -10.99730 -10.75067 -10.61153 -10.59306 -10.22992 -9.87796 -9.55454 -9.52249 -9.04852 -8.99141 -8.52466 -6.94195 -6.31105 -4.02933 1.10157 1.76671 2.62050 2.74920 2.95440 2.97089 3.29013 3.32460 3.46728 3.48355 3.64007 3.64563 4.18326 4.24390 4.30915 4.34791 4.44324 4.56425 4.66799 4.71018 4.86529 4.97730 5.03868 5.07830 5.08057 5.17749 5.26068 5.27386 5.31351 5.38832 5.41817 5.48031 5.48497 5.60204 5.69183 5.73837 5.79758 5.92862 5.97317 5.99171 6.14104 6.57781 6.77326 6.97668 7.60239 7.68784 7.91938 8.39447 8.48145 9.15020 10.78107 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008577 B = 0.002034 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.668165 B =13759.876882 C =16318.802364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.135 4.135 6 C 0.119 3.881 7 N -0.717 5.717 8 C 0.635 3.365 9 O -0.524 6.524 10 C -0.224 4.224 11 C -0.046 4.046 12 C -0.070 4.070 13 C -0.159 4.159 14 C -0.158 4.158 15 N -0.732 5.732 16 C 0.531 3.469 17 O -0.520 6.520 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.406 0.594 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.398 0.602 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 -0.841 26.343 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.160 4.160 5 C -0.172 4.172 6 C -0.003 4.003 7 N -0.369 5.369 8 C 0.422 3.578 9 O -0.402 6.402 10 C -0.226 4.226 11 C -0.048 4.048 12 C -0.088 4.088 13 C -0.196 4.196 14 C -0.195 4.195 15 N -0.387 5.387 16 C 0.317 3.683 17 O -0.394 6.394 18 C -0.276 4.276 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.241 0.759 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.232 0.768 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.202 0.681 26.681 27.401 hybrid contribution 0.648 -1.101 -0.717 1.465 sum 6.850 -0.420 25.964 26.856 Atomic orbital electron populations 1.22184 0.95278 1.02143 1.02679 1.20893 0.94041 0.97624 0.83606 0.89354 1.21795 0.94448 1.01778 0.98004 1.21842 0.96460 1.01582 0.97366 1.21493 0.78310 1.01591 0.98956 1.45863 1.08395 1.56385 1.26214 1.14614 0.82365 0.78920 0.81897 1.90866 1.68688 1.42036 1.38569 1.20561 0.92377 1.04805 1.04900 1.21384 0.92031 0.95004 0.96401 1.18960 0.84502 0.97317 1.07975 1.23126 1.02855 0.95736 0.97848 1.23154 1.02296 1.01306 0.92749 1.46092 1.69126 1.13931 1.09528 1.20268 0.76912 0.87221 0.83866 1.90695 1.48498 1.15797 1.84430 1.23290 1.04392 1.03488 0.96384 1.84785 1.87155 1.16837 1.02790 1.22317 1.50341 0.98829 0.95429 0.89411 1.24724 0.93377 0.98305 0.94965 1.69940 1.43341 1.35814 1.02575 0.86728 0.81093 0.84820 0.79163 1.19229 1.19943 1.15931 0.92487 0.91850 0.91699 0.89973 0.90834 0.90587 0.90776 0.90946 0.90875 0.75876 0.84566 0.88061 0.87246 0.87176 0.87883 0.76790 0.88626 0.88530 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 2 C 0.14 1.38 2.57 -67.94 -0.17 1.20 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C -0.12 -0.77 4.75 -26.73 -0.13 -0.90 16 5 C -0.13 -0.87 5.22 -26.73 -0.14 -1.01 16 6 C 0.12 0.86 5.67 -4.04 -0.02 0.84 16 7 N -0.72 -5.82 5.55 -62.76 -0.35 -6.17 16 8 C 0.64 7.07 7.65 -14.33 -0.11 6.96 16 9 O -0.52 -7.64 17.08 5.27 0.09 -7.55 16 10 C -0.22 -2.31 13.61 -38.84 -0.53 -2.83 16 11 C -0.05 -0.40 13.47 -37.12 -0.50 -0.90 16 12 C -0.07 -0.39 6.21 -93.41 -0.58 -0.97 16 13 C -0.16 -0.67 10.21 -26.70 -0.27 -0.94 16 14 C -0.16 -0.69 10.21 -26.70 -0.27 -0.96 16 15 N -0.73 -8.26 4.53 -53.81 -0.24 -8.50 16 16 C 0.53 8.83 7.81 -10.98 -0.09 8.74 16 17 O -0.52 -10.66 15.53 5.56 0.09 -10.57 16 18 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 19 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 20 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 21 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 22 C 0.09 2.75 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.34 13.97 55.49 0.78 -25.57 16 24 Si 0.86 21.57 27.74 -169.99 -4.72 16.86 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.53 7.75 -51.93 -0.40 0.13 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.41 2.54 8.44 -40.82 -0.34 2.19 16 38 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.40 3.45 8.60 -40.82 -0.35 3.10 16 44 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 413.32 15.07 6.23 6.23 Total: -1.00 -36.48 413.32 -9.56 -46.04 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.41 Total: 0.72 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.03 Total: -5.96 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.18 Total: -40.24 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.48 -9.56 -46.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735017640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.998 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds